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Moc04g10160 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc04g10160
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr4:7521039..7521790
RNA-Seq ExpressionMoc04g10160
SyntenyMoc04g10160
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]5.4e-7360.64Show/hide
Query:  MIRLELSIGDLKANTLFHVIDSRTTYKLLLGRPWIHGNGVITSTLHQCFKFYQDDIKKVEADTNPFSQAESHFADAKFYMKTDIIEETIPTKIPLIKSCD
        MIRLEL IGDLKA+ LFHVIDSRTTYKLLLGRPWIHGNGV+TSTLHQCFKFYQD +KKVEAD+NPFS+AESHFADAKFY K + I E +P + PL K  D
Subjt:  MIRLELSIGDLKANTLFHVIDSRTTYKLLLGRPWIHGNGVITSTLHQCFKFYQDDIKKVEADTNPFSQAESHFADAKFYMKTDIIEETIPTKIPLIKSCD

Query:  KPNTKKL--------------------------WALKVEKAPSAPILRYVSVSRRKKGESPFTECSGNLKVGDVEVLKENFTTPLTKITKKEAKKPEDNQ
            K L                            LK E A + P+LRYV +SRRKKGESPF E    LKVGD+E++KE+FTTPLTKI K+E K    + 
Subjt:  KPNTKKL--------------------------WALKVEKAPSAPILRYVSVSRRKKGESPFTECSGNLKVGDVEVLKENFTTPLTKITKKEAKKPEDNQ

Query:  IKMILPEKRTNDRFDPKTYKLLATAGYDFTTHTKFKSLRI-EIPKLSST
        ++  LP++RT D FDPK YKL+A AGYDFT HT+FKSL I + P+LSST
Subjt:  IKMILPEKRTNDRFDPKTYKLLATAGYDFTTHTKFKSLRI-EIPKLSST

XP_031737372.1 uncharacterized protein LOC116402244 [Cucumis sativus]5.4e-7360.64Show/hide
Query:  MIRLELSIGDLKANTLFHVIDSRTTYKLLLGRPWIHGNGVITSTLHQCFKFYQDDIKKVEADTNPFSQAESHFADAKFYMKTDIIEETIPTKIPLIKSCD
        MIRLEL IGDLKA+ LFHVIDSRTTYKLLLGRPWIHGNGV+TSTLHQCFKFYQD +KKVEAD+NPFS+AESHFADAKFY K + I E +P + PL K  D
Subjt:  MIRLELSIGDLKANTLFHVIDSRTTYKLLLGRPWIHGNGVITSTLHQCFKFYQDDIKKVEADTNPFSQAESHFADAKFYMKTDIIEETIPTKIPLIKSCD

Query:  KPNTKKL--------------------------WALKVEKAPSAPILRYVSVSRRKKGESPFTECSGNLKVGDVEVLKENFTTPLTKITKKEAKKPEDNQ
            K L                            LK E A + P+LRYV +SRRKKGESPF E    LKVGD+E++KE+FTTPLTKI K+E K    + 
Subjt:  KPNTKKL--------------------------WALKVEKAPSAPILRYVSVSRRKKGESPFTECSGNLKVGDVEVLKENFTTPLTKITKKEAKKPEDNQ

Query:  IKMILPEKRTNDRFDPKTYKLLATAGYDFTTHTKFKSLRI-EIPKLSST
        ++  LP++RT D FDPK YKL+A AGYDFT HT+FKSL I + P+LSST
Subjt:  IKMILPEKRTNDRFDPKTYKLLATAGYDFTTHTKFKSLRI-EIPKLSST

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]5.4e-7360.64Show/hide
Query:  MIRLELSIGDLKANTLFHVIDSRTTYKLLLGRPWIHGNGVITSTLHQCFKFYQDDIKKVEADTNPFSQAESHFADAKFYMKTDIIEETIPTKIPLIKSCD
        MIRLEL IGDLKA+ LFHVIDSRTTYKLLLGRPWIHGNGV+TSTLHQCFKFYQD +KKVEAD+NPFS+AESHFADAKFY K + I E +P + PL K  D
Subjt:  MIRLELSIGDLKANTLFHVIDSRTTYKLLLGRPWIHGNGVITSTLHQCFKFYQDDIKKVEADTNPFSQAESHFADAKFYMKTDIIEETIPTKIPLIKSCD

Query:  KPNTKKL--------------------------WALKVEKAPSAPILRYVSVSRRKKGESPFTECSGNLKVGDVEVLKENFTTPLTKITKKEAKKPEDNQ
            K L                            LK E A + P+LRYV +SRRKKGESPF E    LKVGD+E++KE+FTTPLTKI K+E K    + 
Subjt:  KPNTKKL--------------------------WALKVEKAPSAPILRYVSVSRRKKGESPFTECSGNLKVGDVEVLKENFTTPLTKITKKEAKKPEDNQ

Query:  IKMILPEKRTNDRFDPKTYKLLATAGYDFTTHTKFKSLRI-EIPKLSST
        ++  LP++RT D FDPK YKL+A AGYDFT HT+FKSL I + P+LSST
Subjt:  IKMILPEKRTNDRFDPKTYKLLATAGYDFTTHTKFKSLRI-EIPKLSST

XP_031740568.1 uncharacterized protein LOC116403508 [Cucumis sativus]5.4e-7360.64Show/hide
Query:  MIRLELSIGDLKANTLFHVIDSRTTYKLLLGRPWIHGNGVITSTLHQCFKFYQDDIKKVEADTNPFSQAESHFADAKFYMKTDIIEETIPTKIPLIKSCD
        MIRLEL IGDLKA+ LFHVIDSRTTYKLLLGRPWIHGNGV+TSTLHQCFKFYQD +KKVEAD+NPFS+AESHFADAKFY K + I E +P + PL K  D
Subjt:  MIRLELSIGDLKANTLFHVIDSRTTYKLLLGRPWIHGNGVITSTLHQCFKFYQDDIKKVEADTNPFSQAESHFADAKFYMKTDIIEETIPTKIPLIKSCD

Query:  KPNTKKL--------------------------WALKVEKAPSAPILRYVSVSRRKKGESPFTECSGNLKVGDVEVLKENFTTPLTKITKKEAKKPEDNQ
            K L                            LK E A + P+LRYV +SRRKKGESPF E    LKVGD+E++KE+FTTPLTKI K+E K    + 
Subjt:  KPNTKKL--------------------------WALKVEKAPSAPILRYVSVSRRKKGESPFTECSGNLKVGDVEVLKENFTTPLTKITKKEAKKPEDNQ

Query:  IKMILPEKRTNDRFDPKTYKLLATAGYDFTTHTKFKSLRI-EIPKLSST
        ++  LP++RT D FDPK YKL+A AGYDFT HT+FKSL I + P+LSST
Subjt:  IKMILPEKRTNDRFDPKTYKLLATAGYDFTTHTKFKSLRI-EIPKLSST

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]5.4e-7360.64Show/hide
Query:  MIRLELSIGDLKANTLFHVIDSRTTYKLLLGRPWIHGNGVITSTLHQCFKFYQDDIKKVEADTNPFSQAESHFADAKFYMKTDIIEETIPTKIPLIKSCD
        MIRLEL IGDLKA+ LFHVIDSRTTYKLLLGRPWIHGNGV+TSTLHQCFKFYQD +KKVEAD+NPFS+AESHFADAKFY K + I E +P + PL K  D
Subjt:  MIRLELSIGDLKANTLFHVIDSRTTYKLLLGRPWIHGNGVITSTLHQCFKFYQDDIKKVEADTNPFSQAESHFADAKFYMKTDIIEETIPTKIPLIKSCD

Query:  KPNTKKL--------------------------WALKVEKAPSAPILRYVSVSRRKKGESPFTECSGNLKVGDVEVLKENFTTPLTKITKKEAKKPEDNQ
            K L                            LK E A + P+LRYV +SRRKKGESPF E    LKVGD+E++KE+FTTPLTKI K+E K    + 
Subjt:  KPNTKKL--------------------------WALKVEKAPSAPILRYVSVSRRKKGESPFTECSGNLKVGDVEVLKENFTTPLTKITKKEAKKPEDNQ

Query:  IKMILPEKRTNDRFDPKTYKLLATAGYDFTTHTKFKSLRI-EIPKLSST
        ++  LP++RT D FDPK YKL+A AGYDFT HT+FKSL I + P+LSST
Subjt:  IKMILPEKRTNDRFDPKTYKLLATAGYDFTTHTKFKSLRI-EIPKLSST

TrEMBL top hitse value%identityAlignment
A0A5A7T485 Reverse transcriptase3.2e-7160.57Show/hide
Query:  MIRLELSIGDLKANTLFHVIDSRTTYKLLLGRPWIHGNGVITSTLHQCFKFYQDDIKKVEADTNPFSQAESHFADAKFYMKTDIIEETIPTKIPLI----
        MIRLEL IGDLK + LFHVIDSRTTYKLLLGRPWIHGNGV+TSTLHQCFKFYQD +KKVEAD+NPFS+AESHFADAKFY+K D   E +  ++PL+    
Subjt:  MIRLELSIGDLKANTLFHVIDSRTTYKLLLGRPWIHGNGVITSTLHQCFKFYQDDIKKVEADTNPFSQAESHFADAKFYMKTDIIEETIPTKIPLI----

Query:  ----------------------KSCDKPNTKKLWALKVEKAPSAPILRYVSVSRRKKGESPFTECSGNLKVGDVEVLKENFTTPLTKITKKEAKKPEDNQ
                              KS    +T K   L  EK  + PILRYV +SR KKGESPF E    LKVGD+EVLKE+FTTPLTKITK+E K    + 
Subjt:  ----------------------KSCDKPNTKKLWALKVEKAPSAPILRYVSVSRRKKGESPFTECSGNLKVGDVEVLKENFTTPLTKITKKEAKKPEDNQ

Query:  IKMILPEKRTNDRFDPKTYKLLATAGYDFTTHTKFKSLRI-EIPKL
         +  LP+++T D FDPK YKL+A AGYDF THT+FKSL+I E PKL
Subjt:  IKMILPEKRTNDRFDPKTYKLLATAGYDFTTHTKFKSLRI-EIPKL

A0A5A7TJZ7 Retrotransposon gag protein3.2e-7165.92Show/hide
Query:  MIRLELSIGDLKANTLFHVIDSRTTYKLLLGRPWIHGNGVITSTLHQCFKFYQDDIKKVEADTNPFSQAESHFADAKFYMKTDIIEETIPTKIPLIKSCD
        MIRLEL IGDLKA+ LFHVID RTTYKLLL RPWIHGNGV+TS LHQCFKFYQD IKKVEAD NPFS+AESHFADAKFY+K D   E +  ++PL K+  
Subjt:  MIRLELSIGDLKANTLFHVIDSRTTYKLLLGRPWIHGNGVITSTLHQCFKFYQDDIKKVEADTNPFSQAESHFADAKFYMKTDIIEETIPTKIPLIKSCD

Query:  KPNTKKLWALKVEKAPSAPILRYVSVSRRKKGESPFTECSGNLKVGDVEVLKENFTTPLTKITKKEAKKPEDNQIKMILPEKRTNDRFDPKTYKLLATAG
          +T+K   L  EK  + PILRYV +SR KKGESPF +    LKVGD+EVLKE+FTTP TKITK+E K    +  +  LP+  T D FDPK YKL+A  G
Subjt:  KPNTKKLWALKVEKAPSAPILRYVSVSRRKKGESPFTECSGNLKVGDVEVLKENFTTPLTKITKKEAKKPEDNQIKMILPEKRTNDRFDPKTYKLLATAG

Query:  YDFTTHTKFKSLRI-EIPKLSST
        YDFTTH +FKSL+I E PKLSST
Subjt:  YDFTTHTKFKSLRI-EIPKLSST

A0A5A7UD46 Uncharacterized protein7.6e-7361.85Show/hide
Query:  MIRLELSIGDLKANTLFHVIDSRTTYKLLLGRPWIHGNGVITSTLHQCFKFYQDDIKKVEADTNPFSQAESHFADAKFYMKTDIIEETIPTKIPLI----
        MIRLEL IGDLK + LFHVIDSRTTYKLLLGRPWIHGNGV+TSTLHQCFKFYQD +KKVEAD+NPFS+AESHFADAKFY+K D   E +  ++ L+    
Subjt:  MIRLELSIGDLKANTLFHVIDSRTTYKLLLGRPWIHGNGVITSTLHQCFKFYQDDIKKVEADTNPFSQAESHFADAKFYMKTDIIEETIPTKIPLI----

Query:  ----------------------KSCDKPNTKKLWALKVEKAPSAPILRYVSVSRRKKGESPFTECSGNLKVGDVEVLKENFTTPLTKITKKEAKKPEDNQ
                              KS    NT K   L  EK  + PILRYV +SRRKKGESPF E    LKVG++EVLKE+FTTPLTKITK+E K    + 
Subjt:  ----------------------KSCDKPNTKKLWALKVEKAPSAPILRYVSVSRRKKGESPFTECSGNLKVGDVEVLKENFTTPLTKITKKEAKKPEDNQ

Query:  IKMILPEKRTNDRFDPKTYKLLATAGYDFTTHTKFKSLRI-EIPKLSST
         +  LP++RT D FDPK YKL+A AGYDFTTHT+FKSL+I E PKLSST
Subjt:  IKMILPEKRTNDRFDPKTYKLLATAGYDFTTHTKFKSLRI-EIPKLSST

A0A5A7UEC9 Uncharacterized protein5.5e-7160.24Show/hide
Query:  MIRLELSIGDLKANTLFHVIDSRTTYKLLLGRPWIHGNGVITSTLHQCFKFYQDDIKKVEADTNPFSQAESHFADAKFYMKTDIIEETIPTKIPLI----
        +IRLEL IGDLKA+ LFHVI+SRTTYKLLLGRPWIHGNGV+TSTLH CFKFYQD +KKVE D+NPFS+AESHFADAKFY+K D   E +  ++PL+    
Subjt:  MIRLELSIGDLKANTLFHVIDSRTTYKLLLGRPWIHGNGVITSTLHQCFKFYQDDIKKVEADTNPFSQAESHFADAKFYMKTDIIEETIPTKIPLI----

Query:  ----------------------KSCDKPNTKKLWALKVEKAPSAPILRYVSVSRRKKGESPFTECSGNLKVGDVEVLKENFTTPLTKITKKEAKKPEDNQ
                              KS    +T K   L  EK  + PILRYV +SRRKKGESPF E    LKVGD+EVLKE+FTTPLTKI KKE K    + 
Subjt:  ----------------------KSCDKPNTKKLWALKVEKAPSAPILRYVSVSRRKKGESPFTECSGNLKVGDVEVLKENFTTPLTKITKKEAKKPEDNQ

Query:  IKMILPEKRTNDRFDPKTYKLLATAGYDFTTHTKFKSLRI-EIPKLSST
         +  LP++RT D FDPK YKL+A AGYDF THT+FK L+I E PKLSST
Subjt:  IKMILPEKRTNDRFDPKTYKLLATAGYDFTTHTKFKSLRI-EIPKLSST

A0A5D3BV77 Reverse transcriptase5.5e-7160.16Show/hide
Query:  MIRLELSIGDLKANTLFHVIDSRTTYKLLLGRPWIHGNGVITSTLHQCFKFYQDDIKKVEADTNPFSQAESHFADAKFYMKTDIIEETIPTKIPLI----
        MIRLEL IGDLK + LFHVIDSRTTYKLLLGRPWIHGNGV+TSTLHQCFKFYQD +KKVEAD+NPFS+AESHFADAKFY+K D   E +  ++PL+    
Subjt:  MIRLELSIGDLKANTLFHVIDSRTTYKLLLGRPWIHGNGVITSTLHQCFKFYQDDIKKVEADTNPFSQAESHFADAKFYMKTDIIEETIPTKIPLI----

Query:  ----------------------KSCDKPNTKKLWALKVEKAPSAPILRYVSVSRRKKGESPFTECSGNLKVGDVEVLKENFTTPLTKITKKEAKKPEDNQ
                              KS    +T K   L  EK  + PILRYV +SR KKGESPF E    LKVGD+E+LKE FTTPLTKITK+E K    + 
Subjt:  ----------------------KSCDKPNTKKLWALKVEKAPSAPILRYVSVSRRKKGESPFTECSGNLKVGDVEVLKENFTTPLTKITKKEAKKPEDNQ

Query:  IKMILPEKRTNDRFDPKTYKLLATAGYDFTTHTKFKSLRI-EIPKL
         +  LP+++T D FDPK YKL+A AGYDF THT+FKSL+I E PKL
Subjt:  IKMILPEKRTNDRFDPKTYKLLATAGYDFTTHTKFKSLRI-EIPKL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCCGTCTTGAACTCAGCATTGGGGACTTGAAAGCTAACACTCTGTTCCACGTCATAGATTCCAGGACCACCTACAAGCTACTATTAGGGCGCCCTTGGATTCATGG
AAACGGCGTAATAACGTCCACGCTGCACCAATGTTTCAAATTTTATCAAGATGACATCAAGAAGGTTGAGGCTGATACGAACCCATTCTCACAAGCTGAGTCTCATTTTG
CAGATGCGAAATTTTATATGAAAACGGACATTATAGAGGAAACTATACCGACAAAAATCCCCTTGATCAAGAGCTGTGATAAACCTAACACCAAAAAGTTATGGGCCTTG
AAGGTTGAGAAAGCGCCAAGTGCTCCTATCCTTCGTTATGTCTCTGTATCTCGACGAAAGAAGGGTGAATCACCATTTACGGAATGCTCGGGAAACCTAAAGGTCGGTGA
TGTAGAAGTCTTGAAAGAGAACTTCACCACGCCTCTTACAAAGATAACAAAGAAGGAGGCTAAAAAGCCAGAGGACAACCAGATAAAGATGATCTTGCCAGAGAAGCGAA
CGAATGATAGATTTGACCCAAAAACATATAAGCTTTTGGCAACAGCAGGCTATGATTTTACAACTCATACTAAGTTTAAAAGCCTAAGGATCGAAATACCTAAACTTTCT
TCAACCTAG
mRNA sequenceShow/hide mRNA sequence
ATGATCCGTCTTGAACTCAGCATTGGGGACTTGAAAGCTAACACTCTGTTCCACGTCATAGATTCCAGGACCACCTACAAGCTACTATTAGGGCGCCCTTGGATTCATGG
AAACGGCGTAATAACGTCCACGCTGCACCAATGTTTCAAATTTTATCAAGATGACATCAAGAAGGTTGAGGCTGATACGAACCCATTCTCACAAGCTGAGTCTCATTTTG
CAGATGCGAAATTTTATATGAAAACGGACATTATAGAGGAAACTATACCGACAAAAATCCCCTTGATCAAGAGCTGTGATAAACCTAACACCAAAAAGTTATGGGCCTTG
AAGGTTGAGAAAGCGCCAAGTGCTCCTATCCTTCGTTATGTCTCTGTATCTCGACGAAAGAAGGGTGAATCACCATTTACGGAATGCTCGGGAAACCTAAAGGTCGGTGA
TGTAGAAGTCTTGAAAGAGAACTTCACCACGCCTCTTACAAAGATAACAAAGAAGGAGGCTAAAAAGCCAGAGGACAACCAGATAAAGATGATCTTGCCAGAGAAGCGAA
CGAATGATAGATTTGACCCAAAAACATATAAGCTTTTGGCAACAGCAGGCTATGATTTTACAACTCATACTAAGTTTAAAAGCCTAAGGATCGAAATACCTAAACTTTCT
TCAACCTAG
Protein sequenceShow/hide protein sequence
MIRLELSIGDLKANTLFHVIDSRTTYKLLLGRPWIHGNGVITSTLHQCFKFYQDDIKKVEADTNPFSQAESHFADAKFYMKTDIIEETIPTKIPLIKSCDKPNTKKLWAL
KVEKAPSAPILRYVSVSRRKKGESPFTECSGNLKVGDVEVLKENFTTPLTKITKKEAKKPEDNQIKMILPEKRTNDRFDPKTYKLLATAGYDFTTHTKFKSLRIEIPKLS
ST