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Moc04g10430 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc04g10430
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr4:7715247..7716856
RNA-Seq ExpressionMoc04g10430
SyntenyMoc04g10430
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AFP55557.1 non-ltr retroelement reverse transcriptase [Rosa rugosa]4.8e-1638.13Show/hide
Query:  WSPPPLGWVKFHVDAACNPATPCIGIGAICRNSEGEILVTMSKGFDVHYDPLTVELLAIRECLKLALQLNYRSVQLESDCLQAIELHKGDKAIWLEPGTW
        W  P  G +K + D A N    C G G I R+  G ++V   K F      L  ELLAI+  L L ++   R++ +ESDCL+AI L    +      G  
Subjt:  WSPPPLGWVKFHVDAACNPATPCIGIGAICRNSEGEILVTMSKGFDVHYDPLTVELLAIRECLKLALQLNYRSVQLESDCLQAIELHKGDKAIWLEPGTW

Query:  VEDIRNSMIHFTPISFLHVRREGNRVAHKLASNVVASVG
        VEDI+N+M      S  HVRREGN  AH +A  V  + G
Subjt:  VEDIRNSMIHFTPISFLHVRREGNRVAHKLASNVVASVG

KAF5470754.1 hypothetical protein F2P56_011245 [Juglans regia]2.1e-1632.21Show/hide
Query:  IWSPPPLGWVKFHVDAACNPATPCIGIGAICRNSEGEILVTMSKGFDVHYDPLTVELLAIRECLKLALQLNYRSVQLESDCLQAIELHKGDKAIWLEPGT
        +W+PPP  W K + D A +     IGIG   R+ EG ++ T+     ++ DPL VE     + +K  ++L    V  E D LQ I   K    +W     
Subjt:  IWSPPPLGWVKFHVDAACNPATPCIGIGAICRNSEGEILVTMSKGFDVHYDPLTVELLAIRECLKLALQLNYRSVQLESDCLQAIELHKGDKAIWLEPGT

Query:  WVEDIRNSMIHFTPISFLHVRREGNRVAHKLASNVVASVGFCVCSSNFP
        +V + +     F    F HVRR GN +AH LA N +    F V     P
Subjt:  WVEDIRNSMIHFTPISFLHVRREGNRVAHKLASNVVASVGFCVCSSNFP

XP_022142956.1 uncharacterized protein LOC111012950 [Momordica charantia]2.4e-2042.64Show/hide
Query:  GWVKFHVDAACNPATPCIGIGAICRNSEGEILVTMSKGFDVHYDPLTVELLAIRECLKLALQLNYRSVQLESDCLQAIELHKGDKAIWLEPGTWVEDIRN
        GW+K +VD AC        IG +CRN +G+IL   S+  + ++DPL  E LA+ E L+LA  LN + VQ ESD LQ I L   D   W     W+EDIR 
Subjt:  GWVKFHVDAACNPATPCIGIGAICRNSEGEILVTMSKGFDVHYDPLTVELLAIRECLKLALQLNYRSVQLESDCLQAIELHKGDKAIWLEPGTWVEDIRN

Query:  SMIHFTPISFLHVRREGNRVAHKLASNVV
           +F   +FLHV R  N+ A ++AS  V
Subjt:  SMIHFTPISFLHVRREGNRVAHKLASNVV

XP_022154440.1 uncharacterized protein LOC111021711 [Momordica charantia]1.1e-2340.26Show/hide
Query:  GHICNIWSPPPLGWVKFHVDAACNPATPCIGIGAICRNSEGEILVTMSKGFDVHYDPLTVELLAIRECLKLALQLNYRSVQLESDCLQAIELHKGDKAIW
        G   N W+PP   WVK +VD AC  +    GIG +C+N +GEI+V M +  DV Y+PL VE LAI E L L   L+   VQ++SD   +I L   +    
Subjt:  GHICNIWSPPPLGWVKFHVDAACNPATPCIGIGAICRNSEGEILVTMSKGFDVHYDPLTVELLAIRECLKLALQLNYRSVQLESDCLQAIELHKGDKAIW

Query:  LEPGTWVEDIRNSMIHFTPISFLHVRREGNRVAHKLASNVVASVGFCVCSSNFP
         +P  WV+DI    I+F  I F+H++R  + V H+LAS  ++S    +  S FP
Subjt:  LEPGTWVEDIRNSMIHFTPISFLHVRREGNRVAHKLASNVVASVGFCVCSSNFP

XP_039780864.1 uncharacterized protein LOC120648195 [Panicum virgatum]3.6e-1640.94Show/hide
Query:  WSPPPLGWVKFHVDAACNPATPCIGIGAICRNSEGEILVTMSKGFDVHYDPLTVELLAIRECLKLALQLNYRSVQLESDCLQAIELHKGDKAIWLEPGTW
        W PPPL +VK +VDAA +  +    + A+ R+S G  L   +  F   +DP T+E+LA RE L LA  L ++ V++ SDCL AI   + D       G  
Subjt:  WSPPPLGWVKFHVDAACNPATPCIGIGAICRNSEGEILVTMSKGFDVHYDPLTVELLAIRECLKLALQLNYRSVQLESDCLQAIELHKGDKAIWLEPGTW

Query:  VEDIRNSMIHFTPISFLHVRREGNRVAHKLA-SNVVASVGFCVCSSNFP
          +I+ SM  F  I F+H RRE N+ AHKLA S +  SVG  V   N P
Subjt:  VEDIRNSMIHFTPISFLHVRREGNRVAHKLA-SNVVASVGFCVCSSNFP

TrEMBL top hitse value%identityAlignment
A0A1R3HKR2 Reverse transcriptase8.7e-1635.33Show/hide
Query:  HICNIWSPPPLGWVKFHVDAACNPATPCIGIGAICRNSEGEILVTMSKGFDVHYDPLTVELLAIRECLKLALQLNYRSVQLESDCLQAIELHKGDKAIWL
        H    W+ PP+G +K +VDA+ +  T   G+G + R+S G +LV+ ++       PL  E+ A+    ++AL+  Y S  LESD L AI      K  W 
Subjt:  HICNIWSPPPLGWVKFHVDAACNPATPCIGIGAICRNSEGEILVTMSKGFDVHYDPLTVELLAIRECLKLALQLNYRSVQLESDCLQAIELHKGDKAIWL

Query:  EPGTWVEDIRNSMIHFTPISFLHVRREGNRVAHKLASNVVASVGFCVCSS
        E G  + +IR   + F    F+HV RE N +AH+LAS     + F  C S
Subjt:  EPGTWVEDIRNSMIHFTPISFLHVRREGNRVAHKLASNVVASVGFCVCSS

A0A6J1CNR4 uncharacterized protein LOC1110129501.2e-2042.64Show/hide
Query:  GWVKFHVDAACNPATPCIGIGAICRNSEGEILVTMSKGFDVHYDPLTVELLAIRECLKLALQLNYRSVQLESDCLQAIELHKGDKAIWLEPGTWVEDIRN
        GW+K +VD AC        IG +CRN +G+IL   S+  + ++DPL  E LA+ E L+LA  LN + VQ ESD LQ I L   D   W     W+EDIR 
Subjt:  GWVKFHVDAACNPATPCIGIGAICRNSEGEILVTMSKGFDVHYDPLTVELLAIRECLKLALQLNYRSVQLESDCLQAIELHKGDKAIWLEPGTWVEDIRN

Query:  SMIHFTPISFLHVRREGNRVAHKLASNVV
           +F   +FLHV R  N+ A ++AS  V
Subjt:  SMIHFTPISFLHVRREGNRVAHKLASNVV

A0A6J1DJL6 uncharacterized protein LOC1110217115.1e-2440.26Show/hide
Query:  GHICNIWSPPPLGWVKFHVDAACNPATPCIGIGAICRNSEGEILVTMSKGFDVHYDPLTVELLAIRECLKLALQLNYRSVQLESDCLQAIELHKGDKAIW
        G   N W+PP   WVK +VD AC  +    GIG +C+N +GEI+V M +  DV Y+PL VE LAI E L L   L+   VQ++SD   +I L   +    
Subjt:  GHICNIWSPPPLGWVKFHVDAACNPATPCIGIGAICRNSEGEILVTMSKGFDVHYDPLTVELLAIRECLKLALQLNYRSVQLESDCLQAIELHKGDKAIW

Query:  LEPGTWVEDIRNSMIHFTPISFLHVRREGNRVAHKLASNVVASVGFCVCSSNFP
         +P  WV+DI    I+F  I F+H++R  + V H+LAS  ++S    +  S FP
Subjt:  LEPGTWVEDIRNSMIHFTPISFLHVRREGNRVAHKLASNVVASVGFCVCSSNFP

A0A6P9EAW2 uncharacterized protein LOC1183445713.0e-1635.04Show/hide
Query:  WSPPPLGWVKFHVDAACNPATPCIGIGAICRNSEGEILVTMSKGFDVHYDPLTVELLAIRECLKLALQLNYRSVQLESDCLQAIELHKGDKAIWLEPGTW
        WSPPPL   K + DAA + A   +GIG I RN  G ++ T      ++ DP   E +   E  +L   L   ++ LE D LQ I+        W   G  
Subjt:  WSPPPLGWVKFHVDAACNPATPCIGIGAICRNSEGEILVTMSKGFDVHYDPLTVELLAIRECLKLALQLNYRSVQLESDCLQAIELHKGDKAIWLEPGTW

Query:  VEDIRNSMIHFTPISFLHVRREGNRVAHKLASNVVAS
        +ED++  +  F   S +H+RREGN+ AH+LA N + +
Subjt:  VEDIRNSMIHFTPISFLHVRREGNRVAHKLASNVVAS

J7G0Q7 Non-ltr retroelement reverse transcriptase2.3e-1638.13Show/hide
Query:  WSPPPLGWVKFHVDAACNPATPCIGIGAICRNSEGEILVTMSKGFDVHYDPLTVELLAIRECLKLALQLNYRSVQLESDCLQAIELHKGDKAIWLEPGTW
        W  P  G +K + D A N    C G G I R+  G ++V   K F      L  ELLAI+  L L ++   R++ +ESDCL+AI L    +      G  
Subjt:  WSPPPLGWVKFHVDAACNPATPCIGIGAICRNSEGEILVTMSKGFDVHYDPLTVELLAIRECLKLALQLNYRSVQLESDCLQAIELHKGDKAIWLEPGTW

Query:  VEDIRNSMIHFTPISFLHVRREGNRVAHKLASNVVASVG
        VEDI+N+M      S  HVRREGN  AH +A  V  + G
Subjt:  VEDIRNSMIHFTPISFLHVRREGNRVAHKLASNVVASVG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G13980.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein4.3e-0730.2Show/hide
Query:  WSPPPLGWVKFHVDAACNPATPCIGIGAICRNSEGEILVTMSKGFDVHYDPLTVELLAIRECLKLALQLNYRSVQLESDCLQAIELHKGDKAIWLEPGTW
        W  PP   +K + DA  N          I RN +G      S   D    PL  E  A+   L+      Y  V +E DC     L  G  +        
Subjt:  WSPPPLGWVKFHVDAACNPATPCIGIGAICRNSEGEILVTMSKGFDVHYDPLTVELLAIRECLKLALQLNYRSVQLESDCLQAIELHKGDKAIWLEPGTW

Query:  VEDIRNSMIHFTPISFLHVRREGNRVAHKLASNVVASVGFCVCSSNFPI
        ++DIR     F+ + F  VRR GN+VAH+LA     S  F   S   PI
Subjt:  VEDIRNSMIHFTPISFLHVRREGNRVAHKLASNVVASVGFCVCSSNFPI

AT3G09510.1 Ribonuclease H-like superfamily protein9.6e-0729.53Show/hide
Query:  WSPPPLGWVKFHVDAACNPATPCIGIGAICRNSEGEILVTMSKGFDVHYDPLTVELLAIRECLKLALQLNYRSVQLESDCLQAIELHKGDKAIWLEPGTW
        W  PP  +VK + DA  +        G I RN  G  +   S       +PL  E  A+   L+      Y  V +E DC   I L  G  +        
Subjt:  WSPPPLGWVKFHVDAACNPATPCIGIGAICRNSEGEILVTMSKGFDVHYDPLTVELLAIRECLKLALQLNYRSVQLESDCLQAIELHKGDKAIWLEPGTW

Query:  VEDIRNSMIHFTPISFLHVRREGNRVAHKLASNVVASVGFCVCSSNFPI
        +EDI      F  I F  +RR+GN++AH LA        F   S + PI
Subjt:  VEDIRNSMIHFTPISFLHVRREGNRVAHKLASNVVASVGFCVCSSNFPI

AT3G23320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein6.9e-0527.01Show/hide
Query:  WSPPPLGWVKFHVDAACNPATPCIGIGAICRNSEGEILVTMSKGFDVHYDPLTVELLAIRECLKLALQLNYRSVQLESDCLQAIELHKGDKAIWLEPGTW
        W  P   WVK + D + +      G+  I RNS+G  L      F         E  A+   ++ A  L YR V+ E D +    L + +K        +
Subjt:  WSPPPLGWVKFHVDAACNPATPCIGIGAICRNSEGEILVTMSKGFDVHYDPLTVELLAIRECLKLALQLNYRSVQLESDCLQAIELHKGDKAIWLEPGTW

Query:  VEDIRNSMIHFTPISFLHVRREGNRVAHKLASNVVAS
        +E I+     FT + F    RE N     LA   VA+
Subjt:  VEDIRNSMIHFTPISFLHVRREGNRVAHKLASNVVAS

AT5G42965.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.4e-0530.34Show/hide
Query:  LTVELLAIRECLKLALQLNYRSVQLESDCLQAIELHKGDKAIWLEPGTWVEDIRNSMIHFTPISFLHVRREGNRVAHKLASNVVASVGF
        L VEL A+R       + NY+ V  ESD    + L  GD   +      ++DIR+    F  +  +H++REGN VA ++A   ++ + +
Subjt:  LTVELLAIRECLKLALQLNYRSVQLESDCLQAIELHKGDKAIWLEPGTWVEDIRNSMIHFTPISFLHVRREGNRVAHKLASNVVASVGF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTATGCTGGTTGTAGGGCAAAGAGCCAGTCAACGGATTGAAGACCTCTGCGGGCACATCTGTAATATCTGGTCTCCACCTCCCCTGGGGTGGGTTAAATTTCATGT
TGATGCGGCGTGTAATCCGGCGACTCCTTGTATTGGTATAGGAGCTATTTGTCGGAACAGTGAAGGGGAAATTTTGGTTACCATGTCCAAAGGCTTCGATGTTCACTACG
ATCCCCTAACAGTGGAATTACTCGCCATCCGTGAATGTCTGAAGCTCGCTCTTCAGTTAAATTATCGATCTGTGCAGCTGGAGTCGGACTGTCTTCAAGCTATTGAGCTT
CACAAAGGGGACAAAGCGATTTGGTTGGAGCCTGGCACCTGGGTTGAGGATATCAGAAATTCCATGATACATTTCACCCCGATTTCATTCTTGCATGTGAGAAGAGAAGG
CAATAGGGTTGCCCACAAGCTCGCGTCGAATGTGGTTGCCTCCGTGGGTTTTTGTGTCTGTTCTTCTAATTTCCCAATTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTTATGCTGGTTGTAGGGCAAAGAGCCAGTCAACGGATTGAAGACCTCTGCGGGCACATCTGTAATATCTGGTCTCCACCTCCCCTGGGGTGGGTTAAATTTCATGT
TGATGCGGCGTGTAATCCGGCGACTCCTTGTATTGGTATAGGAGCTATTTGTCGGAACAGTGAAGGGGAAATTTTGGTTACCATGTCCAAAGGCTTCGATGTTCACTACG
ATCCCCTAACAGTGGAATTACTCGCCATCCGTGAATGTCTGAAGCTCGCTCTTCAGTTAAATTATCGATCTGTGCAGCTGGAGTCGGACTGTCTTCAAGCTATTGAGCTT
CACAAAGGGGACAAAGCGATTTGGTTGGAGCCTGGCACCTGGGTTGAGGATATCAGAAATTCCATGATACATTTCACCCCGATTTCATTCTTGCATGTGAGAAGAGAAGG
CAATAGGGTTGCCCACAAGCTCGCGTCGAATGTGGTTGCCTCCGTGGGTTTTTGTGTCTGTTCTTCTAATTTCCCAATTTAG
Protein sequenceShow/hide protein sequence
MVMLVVGQRASQRIEDLCGHICNIWSPPPLGWVKFHVDAACNPATPCIGIGAICRNSEGEILVTMSKGFDVHYDPLTVELLAIRECLKLALQLNYRSVQLESDCLQAIEL
HKGDKAIWLEPGTWVEDIRNSMIHFTPISFLHVRREGNRVAHKLASNVVASVGFCVCSSNFPI