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Moc04g10630 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc04g10630
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr4:7931098..7931628
RNA-Seq ExpressionMoc04g10630
SyntenyMoc04g10630
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAB5561215.1 hypothetical protein DKX38_006172 [Salix brachista]8.5e-2346.81Show/hide
Query:  MKATISNSCGKEKLKFADVRDVALGEEIRIKNSGIASTSGIDLNVDRETNNNRDHRKY-----GKLRNNRIEGAH-----------NTWVVDSGASFHTT
        M+ TISNS GK KL + D+RD+ LGEE+R +++G +STSG  LNV+   +   +  K       K  N   E  H           ++WV+DSGASFHTT
Subjt:  MKATISNSCGKEKLKFADVRDVALGEEIRIKNSGIASTSGIDLNVDRETNNNRDHRKY-----GKLRNNRIEGAH-----------NTWVVDSGASFHTT

Query:  GQRDILENYVAGNHGKMYLADGKPLDIIGICDVNLKMANSS
          ++IL+NYVAG++G +YLADG+PL IIGI DV +K+ N+S
Subjt:  GQRDILENYVAGNHGKMYLADGKPLDIIGICDVNLKMANSS

KAG6525408.1 hypothetical protein ZIOFF_015364 [Zingiber officinale]1.3e-2350.78Show/hide
Query:  MKATISNSCGKEKLKFADVRDVALGEEIRIKNSG--IASTSGIDLNVDRETNNNRDHRKYGKLRNNRIEGAHNTWVVDSGASFHTTGQRDILENYVAGNH
        M+A +SNS G  KL F DVRD  L EE+RI +SG  +AS S +++ VD                        + WV+DSGASFHTT QR+ILENYVAGNH
Subjt:  MKATISNSCGKEKLKFADVRDVALGEEIRIKNSG--IASTSGIDLNVDRETNNNRDHRKYGKLRNNRIEGAHNTWVVDSGASFHTTGQRDILENYVAGNH

Query:  GKMYLADGKPLDIIGICDVNLKMANSSV
        GK+YLADG+PLDI+G   + LKM+N  V
Subjt:  GKMYLADGKPLDIIGICDVNLKMANSSV

PON60333.1 Zinc finger, CCHC-type [Parasponia andersonii]1.9e-2240.88Show/hide
Query:  MKATISNSCGKEKLKFADVRDVALGEEIRIKNSGIASTSGIDLNV---DR--ETNNNRDHRKYGKLRNNR------------------------------
        M+A +SNS GKEKL+F DVRD  L EE+R  +SG  ++S   LN+   DR  E N+NR   K  K RN R                              
Subjt:  MKATISNSCGKEKLKFADVRDVALGEEIRIKNSGIASTSGIDLNV---DR--ETNNNRDHRKYGKLRNNR------------------------------

Query:  --------------------IEGAHNTWVVDSGASFHTTGQRDILENYVAGNHGKMYLADGKPLDIIGICDVNLKMANSSV
                            ++   ++WV+DSGASFHTT  RD+LENY+AGN+GK+YLADG+PLDI+G+ D+ LKM+N SV
Subjt:  --------------------IEGAHNTWVVDSGASFHTTGQRDILENYVAGNHGKMYLADGKPLDIIGICDVNLKMANSSV

RVX07359.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]8.5e-2345.74Show/hide
Query:  MKATISNSCGKEKLKFADVRDVALGEEIRIKNSGIASTSGIDLNVD---RETNNNRDHRKYGKLRNNRIEGAHNTWVVDSGASFHTTGQRDILENYVAGN
        MK  +SNS GKEKLK+ D+R + L EEIR++++   S SG  LN++   R+  N  +    GK    +++   + W++DSGASFHTT  R+I++NYVAG+
Subjt:  MKATISNSCGKEKLKFADVRDVALGEEIRIKNSGIASTSGIDLNVD---RETNNNRDHRKYGKLRNNRIEGAHNTWVVDSGASFHTTGQRDILENYVAGN

Query:  HGKMYLADGKPLDIIGICDVNLKMANSSV
         GK+YLADG  LD++G+ DV + + N SV
Subjt:  HGKMYLADGKPLDIIGICDVNLKMANSSV

XP_022152845.1 uncharacterized protein LOC111020469 [Momordica charantia]3.5e-2445.14Show/hide
Query:  MKATISNSCGKEKLKFADVRDVALGEEIRIKNSGIASTSGIDLNVDRETNNNRDHRKYGKLRNNR-----------------------------------
        M+A ISNSC KEKLKF DVRD AL EEIR K+SGIA TSG  LNVDR  NNNR +   GK +NNR                                   
Subjt:  MKATISNSCGKEKLKFADVRDVALGEEIRIKNSGIASTSGIDLNVDRETNNNRDHRKYGKLRNNR-----------------------------------

Query:  --------------IEGAHNTWVVDSGASFHTTGQRDILENYVAGNHGKMYLADGKPLDIIGICDVNLKMANSSV
                      +E AH+TWV+DS                  GNHGK+YLADG+PLDIIGI +VNLKMAN SV
Subjt:  --------------IEGAHNTWVVDSGASFHTTGQRDILENYVAGNHGKMYLADGKPLDIIGICDVNLKMANSSV

TrEMBL top hitse value%identityAlignment
A0A2P5CH01 Zinc finger, CCHC-type9.2e-2340.88Show/hide
Query:  MKATISNSCGKEKLKFADVRDVALGEEIRIKNSGIASTSGIDLNV---DR--ETNNNRDHRKYGKLRNNR------------------------------
        M+A +SNS GKEKL+F DVRD  L EE+R  +SG  ++S   LN+   DR  E N+NR   K  K RN R                              
Subjt:  MKATISNSCGKEKLKFADVRDVALGEEIRIKNSGIASTSGIDLNV---DR--ETNNNRDHRKYGKLRNNR------------------------------

Query:  --------------------IEGAHNTWVVDSGASFHTTGQRDILENYVAGNHGKMYLADGKPLDIIGICDVNLKMANSSV
                            ++   ++WV+DSGASFHTT  RD+LENY+AGN+GK+YLADG+PLDI+G+ D+ LKM+N SV
Subjt:  --------------------IEGAHNTWVVDSGASFHTTGQRDILENYVAGNHGKMYLADGKPLDIIGICDVNLKMANSSV

A0A438JEH9 Retrovirus-related Pol polyprotein from transposon TNT 1-944.1e-2345.74Show/hide
Query:  MKATISNSCGKEKLKFADVRDVALGEEIRIKNSGIASTSGIDLNVD---RETNNNRDHRKYGKLRNNRIEGAHNTWVVDSGASFHTTGQRDILENYVAGN
        MK  +SNS GKEKLK+ D+R + L EEIR++++   S SG  LN++   R+  N  +    GK    +++   + W++DSGASFHTT  R+I++NYVAG+
Subjt:  MKATISNSCGKEKLKFADVRDVALGEEIRIKNSGIASTSGIDLNVD---RETNNNRDHRKYGKLRNNRIEGAHNTWVVDSGASFHTTGQRDILENYVAGN

Query:  HGKMYLADGKPLDIIGICDVNLKMANSSV
         GK+YLADG  LD++G+ DV + + N SV
Subjt:  HGKMYLADGKPLDIIGICDVNLKMANSSV

A0A5N5N166 Uncharacterized protein4.1e-2346.81Show/hide
Query:  MKATISNSCGKEKLKFADVRDVALGEEIRIKNSGIASTSGIDLNVDRETNNNRDHRKY-----GKLRNNRIEGAH-----------NTWVVDSGASFHTT
        M+ TISNS GK KL + D+RD+ LGEE+R +++G +STSG  LNV+   +   +  K       K  N   E  H           ++WV+DSGASFHTT
Subjt:  MKATISNSCGKEKLKFADVRDVALGEEIRIKNSGIASTSGIDLNVDRETNNNRDHRKY-----GKLRNNRIEGAH-----------NTWVVDSGASFHTT

Query:  GQRDILENYVAGNHGKMYLADGKPLDIIGICDVNLKMANSS
          ++IL+NYVAG++G +YLADG+PL IIGI DV +K+ N+S
Subjt:  GQRDILENYVAGNHGKMYLADGKPLDIIGICDVNLKMANSS

A0A6J1DF43 uncharacterized protein LOC1110204691.7e-2445.14Show/hide
Query:  MKATISNSCGKEKLKFADVRDVALGEEIRIKNSGIASTSGIDLNVDRETNNNRDHRKYGKLRNNR-----------------------------------
        M+A ISNSC KEKLKF DVRD AL EEIR K+SGIA TSG  LNVDR  NNNR +   GK +NNR                                   
Subjt:  MKATISNSCGKEKLKFADVRDVALGEEIRIKNSGIASTSGIDLNVDRETNNNRDHRKYGKLRNNR-----------------------------------

Query:  --------------IEGAHNTWVVDSGASFHTTGQRDILENYVAGNHGKMYLADGKPLDIIGICDVNLKMANSSV
                      +E AH+TWV+DS                  GNHGK+YLADG+PLDIIGI +VNLKMAN SV
Subjt:  --------------IEGAHNTWVVDSGASFHTTGQRDILENYVAGNHGKMYLADGKPLDIIGICDVNLKMANSSV

A5ASH8 gag_pre-integrs domain-containing protein2.0e-2245.24Show/hide
Query:  MKATISNSCGKEKLKFADVRDVALGEEIRIKNSGIASTSGIDLNVDRETNNNRDHRKYGKLRNNRIEGAHNTWVVDSGASFHTTGQRDILENYVAGNHGK
        M+  +SNS GKEKLK+ D+RD+ L EEIR ++ G  S SG DLN++                  R++   + WV+DSGASFHTT  R+I++NYVA + GK
Subjt:  MKATISNSCGKEKLKFADVRDVALGEEIRIKNSGIASTSGIDLNVDRETNNNRDHRKYGKLRNNRIEGAHNTWVVDSGASFHTTGQRDILENYVAGNHGK

Query:  MYLADGKPLDIIGICDVNLKMANSSV
        +YLADG  LD++G+ DV + + N S+
Subjt:  MYLADGKPLDIIGICDVNLKMANSSV

SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-947.0e-0438.18Show/hide
Query:  IEGAHNTWVVDSGASFHTTGQRDILENYVAGNHGKMYLADGKPLDIIGICDVNLK
        + G  + WVVD+ AS H T  RD+   YVAG+ G + + +     I GI D+ +K
Subjt:  IEGAHNTWVVDSGASFHTTGQRDILENYVAGNHGKMYLADGKPLDIIGICDVNLK

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGCAACTATTTCAAATTCTTGTGGTAAAGAGAAATTGAAATTCGCAGATGTCAGAGATGTAGCTCTTGGAGAGGAGATTCGCATAAAGAATTCTGGTATTGCGTC
TACTTCTGGTATAGATTTGAATGTAGATAGAGAAACAAATAATAACAGAGACCACAGAAAATATGGAAAGTTAAGAAATAACAGAATTGAAGGCGCTCATAACACATGGG
TGGTGGATTCAGGTGCGTCTTTTCACACTACAGGACAACGTGATATTCTTGAAAATTATGTTGCAGGAAATCATGGAAAGATGTATCTTGCTGATGGAAAGCCTTTAGAC
ATCATTGGGATTTGTGACGTTAATTTAAAAATGGCGAACAGTTCAGTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAGGCAACTATTTCAAATTCTTGTGGTAAAGAGAAATTGAAATTCGCAGATGTCAGAGATGTAGCTCTTGGAGAGGAGATTCGCATAAAGAATTCTGGTATTGCGTC
TACTTCTGGTATAGATTTGAATGTAGATAGAGAAACAAATAATAACAGAGACCACAGAAAATATGGAAAGTTAAGAAATAACAGAATTGAAGGCGCTCATAACACATGGG
TGGTGGATTCAGGTGCGTCTTTTCACACTACAGGACAACGTGATATTCTTGAAAATTATGTTGCAGGAAATCATGGAAAGATGTATCTTGCTGATGGAAAGCCTTTAGAC
ATCATTGGGATTTGTGACGTTAATTTAAAAATGGCGAACAGTTCAGTCTAG
Protein sequenceShow/hide protein sequence
MKATISNSCGKEKLKFADVRDVALGEEIRIKNSGIASTSGIDLNVDRETNNNRDHRKYGKLRNNRIEGAHNTWVVDSGASFHTTGQRDILENYVAGNHGKMYLADGKPLD
IIGICDVNLKMANSSV