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Moc04g10930 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc04g10930
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionTy3/gypsy retrotransposon protein
Genome locationchr4:8160359..8161930
RNA-Seq ExpressionMoc04g10930
SyntenyMoc04g10930
Gene Ontology termsGO:0110165 - cellular anatomical structure (cellular component)
InterPro domainsIPR016197 - Chromo-like domain superfamily
IPR023780 - Chromo domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033137.1 polyprotein [Cucumis melo var. makuwa]5.3e-1351.81Show/hide
Query:  ITEPEKVYATCTNEATSKEEALVAWKHLLEEEATWEGLDMIERQFPSFFAWNFNTHLRDKVDLEGGSDVRPPIVYTYARRGRK
        IT+PE+VY+   N  T K EAL++WK L   EATWE    ++ QFP F       HL DKVDLE  SD RPPI++TY RR +K
Subjt:  ITEPEKVYATCTNEATSKEEALVAWKHLLEEEATWEGLDMIERQFPSFFAWNFNTHLRDKVDLEGGSDVRPPIVYTYARRGRK

KAA0049630.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]5.3e-1351.69Show/hide
Query:  ITEPEKVYATCTNEATSKEEALVAWKHLLEEEATWEGLDMIERQFPSFFAWNFNTHLRDKVDLEGGSDVRPPIVYTYARR----GRKGN
        IT+PE++YA   N+AT + EALV WK L   EATWE    ++ QFP F       HL DKVDLE  SD RPPI++TY RR    G +GN
Subjt:  ITEPEKVYATCTNEATSKEEALVAWKHLLEEEATWEGLDMIERQFPSFFAWNFNTHLRDKVDLEGGSDVRPPIVYTYARR----GRKGN

KAA0051400.1 putative retroelement pol polyprotein [Cucumis melo var. makuwa]4.0e-1351.69Show/hide
Query:  ITEPEKVYATCTNEATSKEEALVAWKHLLEEEATWEGLDMIERQFPSFFAWNFNTHLRDKVDLEGGSDVRPPIVYTYARR----GRKGN
        IT+PE++YA   N+AT + EALV+WK L   EATWE    ++ QFP F       HL DKVDLE  SD RPPI++TY RR    G +GN
Subjt:  ITEPEKVYATCTNEATSKEEALVAWKHLLEEEATWEGLDMIERQFPSFFAWNFNTHLRDKVDLEGGSDVRPPIVYTYARR----GRKGN

TYK15990.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]5.3e-1351.69Show/hide
Query:  ITEPEKVYATCTNEATSKEEALVAWKHLLEEEATWEGLDMIERQFPSFFAWNFNTHLRDKVDLEGGSDVRPPIVYTYARR----GRKGN
        IT+PE++YA   N+AT + EALV WK L   EATWE    ++ QFP F       HL DKVDLE  SD RPPI++TY RR    G +GN
Subjt:  ITEPEKVYATCTNEATSKEEALVAWKHLLEEEATWEGLDMIERQFPSFFAWNFNTHLRDKVDLEGGSDVRPPIVYTYARR----GRKGN

TYK23090.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]5.3e-1351.69Show/hide
Query:  ITEPEKVYATCTNEATSKEEALVAWKHLLEEEATWEGLDMIERQFPSFFAWNFNTHLRDKVDLEGGSDVRPPIVYTYARR----GRKGN
        IT+PE++YA   N+AT + EALV WK L   EATWE    ++ QFP F       HL DKVDLE  SD RPPI++TY RR    G +GN
Subjt:  ITEPEKVYATCTNEATSKEEALVAWKHLLEEEATWEGLDMIERQFPSFFAWNFNTHLRDKVDLEGGSDVRPPIVYTYARR----GRKGN

TrEMBL top hitse value%identityAlignment
A0A5A7SUY2 Polyprotein2.6e-1351.81Show/hide
Query:  ITEPEKVYATCTNEATSKEEALVAWKHLLEEEATWEGLDMIERQFPSFFAWNFNTHLRDKVDLEGGSDVRPPIVYTYARRGRK
        IT+PE+VY+   N  T K EAL++WK L   EATWE    ++ QFP F       HL DKVDLE  SD RPPI++TY RR +K
Subjt:  ITEPEKVYATCTNEATSKEEALVAWKHLLEEEATWEGLDMIERQFPSFFAWNFNTHLRDKVDLEGGSDVRPPIVYTYARRGRK

A0A5A7U2S1 Ty3/gypsy retrotransposon protein2.6e-1351.69Show/hide
Query:  ITEPEKVYATCTNEATSKEEALVAWKHLLEEEATWEGLDMIERQFPSFFAWNFNTHLRDKVDLEGGSDVRPPIVYTYARR----GRKGN
        IT+PE++YA   N+AT + EALV WK L   EATWE    ++ QFP F       HL DKVDLE  SD RPPI++TY RR    G +GN
Subjt:  ITEPEKVYATCTNEATSKEEALVAWKHLLEEEATWEGLDMIERQFPSFFAWNFNTHLRDKVDLEGGSDVRPPIVYTYARR----GRKGN

A0A5A7U8A5 Putative retroelement pol polyprotein2.0e-1351.69Show/hide
Query:  ITEPEKVYATCTNEATSKEEALVAWKHLLEEEATWEGLDMIERQFPSFFAWNFNTHLRDKVDLEGGSDVRPPIVYTYARR----GRKGN
        IT+PE++YA   N+AT + EALV+WK L   EATWE    ++ QFP F       HL DKVDLE  SD RPPI++TY RR    G +GN
Subjt:  ITEPEKVYATCTNEATSKEEALVAWKHLLEEEATWEGLDMIERQFPSFFAWNFNTHLRDKVDLEGGSDVRPPIVYTYARR----GRKGN

A0A5D3CXB1 Ty3/gypsy retrotransposon protein2.6e-1351.69Show/hide
Query:  ITEPEKVYATCTNEATSKEEALVAWKHLLEEEATWEGLDMIERQFPSFFAWNFNTHLRDKVDLEGGSDVRPPIVYTYARR----GRKGN
        IT+PE++YA   N+AT + EALV WK L   EATWE    ++ QFP F       HL DKVDLE  SD RPPI++TY RR    G +GN
Subjt:  ITEPEKVYATCTNEATSKEEALVAWKHLLEEEATWEGLDMIERQFPSFFAWNFNTHLRDKVDLEGGSDVRPPIVYTYARR----GRKGN

A0A5D3DI73 Ty3/gypsy retrotransposon protein2.6e-1351.69Show/hide
Query:  ITEPEKVYATCTNEATSKEEALVAWKHLLEEEATWEGLDMIERQFPSFFAWNFNTHLRDKVDLEGGSDVRPPIVYTYARR----GRKGN
        IT+PE++YA   N+AT + EALV WK L   EATWE    ++ QFP F       HL DKVDLE  SD RPPI++TY RR    G +GN
Subjt:  ITEPEKVYATCTNEATSKEEALVAWKHLLEEEATWEGLDMIERQFPSFFAWNFNTHLRDKVDLEGGSDVRPPIVYTYARR----GRKGN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCACCGACAGGTCAACTGGCTATGCTCTACGTACCTAGGCTGTTGGATTTGGAGGTGATAAAGAATGAGATCACGGAGCCAGAGAAAGTGTACGCCACCTGCACCAA
CGAAGCAACAAGCAAGGAAGAGGCCTTGGTGGCTTGGAAGCATCTACTAGAGGAAGAGGCAACGTGGGAAGGATTGGACATGATTGAAAGACAGTTTCCTAGCTTCTTTG
CGTGGAATTTTAACACCCACCTTAGGGACAAGGTGGATCTTGAAGGGGGGAGTGATGTTAGGCCACCAATTGTGTACACGTATGCAAGGAGGGGTAGGAAGGGAAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGCCACCGACAGGTCAACTGGCTATGCTCTACGTACCTAGGCTGTTGGATTTGGAGGTGATAAAGAATGAGATCACGGAGCCAGAGAAAGTGTACGCCACCTGCACCAA
CGAAGCAACAAGCAAGGAAGAGGCCTTGGTGGCTTGGAAGCATCTACTAGAGGAAGAGGCAACGTGGGAAGGATTGGACATGATTGAAAGACAGTTTCCTAGCTTCTTTG
CGTGGAATTTTAACACCCACCTTAGGGACAAGGTGGATCTTGAAGGGGGGAGTGATGTTAGGCCACCAATTGTGTACACGTATGCAAGGAGGGGTAGGAAGGGAAATTAA
Protein sequenceShow/hide protein sequence
MPPTGQLAMLYVPRLLDLEVIKNEITEPEKVYATCTNEATSKEEALVAWKHLLEEEATWEGLDMIERQFPSFFAWNFNTHLRDKVDLEGGSDVRPPIVYTYARRGRKGN