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Moc04g11030 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc04g11030
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionTy1-copia retrotransposon protein
Genome locationchr4:8263261..8267847
RNA-Seq ExpressionMoc04g11030
SyntenyMoc04g11030
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051006.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]3.2e-2653.62Show/hide
Query:  VQKSTKVIWDTLESRYGGDDTSRRKYVLSKLLQFQMPDDKPVMDQVHEYENLVASVLFEGMEI-------------------------------------
        VQKS K IW TLESRYGGDD  R+KYV+ K LQFQM DDKPVM+Q+HEYENLVA+VL EGM++                                     
Subjt:  VQKSTKVIWDTLESRYGGDDTSRRKYVLSKLLQFQMPDDKPVMDQVHEYENLVASVLFEGMEI-------------------------------------

Query:  -HVSTEEANRLKDKLSSQSLNSAKANLVESSSAFKDRT
         H+ TEEANRLKDKL+SQ+LNS  ANLVESS   +DRT
Subjt:  -HVSTEEANRLKDKLSSQSLNSAKANLVESSSAFKDRT
TYK04394.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]3.2e-2653.62Show/hide
Query:  VQKSTKVIWDTLESRYGGDDTSRRKYVLSKLLQFQMPDDKPVMDQVHEYENLVASVLFEGMEI-------------------------------------
        VQKS K IW TLESRYGGDD  R+KYV+ K LQFQM DDKPVM+Q+HEYENLVA+VL EGM++                                     
Subjt:  VQKSTKVIWDTLESRYGGDDTSRRKYVLSKLLQFQMPDDKPVMDQVHEYENLVASVLFEGMEI-------------------------------------

Query:  -HVSTEEANRLKDKLSSQSLNSAKANLVESSSAFKDRT
         H+ TEEANRLKDKL+SQ+LNS  ANLVESS   +DRT
Subjt:  -HVSTEEANRLKDKLSSQSLNSAKANLVESSSAFKDRT
TYK11996.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]9.4e-2652.9Show/hide
Query:  VQKSTKVIWDTLESRYGGDDTSRRKYVLSKLLQFQMPDDKPVMDQVHEYENLVASVLFEGMEI-------------------------------------
        VQKS K IW TLESRYGGDD  R+KYV+ K LQFQM DDKPV++Q+HEYENLVA+VL EGM++                                     
Subjt:  VQKSTKVIWDTLESRYGGDDTSRRKYVLSKLLQFQMPDDKPVMDQVHEYENLVASVLFEGMEI-------------------------------------

Query:  -HVSTEEANRLKDKLSSQSLNSAKANLVESSSAFKDRT
         H+ TEEANRLKDKL+SQ+LNS  ANLVESS   +DRT
Subjt:  -HVSTEEANRLKDKLSSQSLNSAKANLVESSSAFKDRT
TYK26791.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]9.4e-2652.9Show/hide
Query:  VQKSTKVIWDTLESRYGGDDTSRRKYVLSKLLQFQMPDDKPVMDQVHEYENLVASVLFEGMEI-------------------------------------
        VQKS K IW TLESRYGGDD  R+KYV+ K LQFQM DDKPV++Q+HEYENLVA+VL EGM++                                     
Subjt:  VQKSTKVIWDTLESRYGGDDTSRRKYVLSKLLQFQMPDDKPVMDQVHEYENLVASVLFEGMEI-------------------------------------

Query:  -HVSTEEANRLKDKLSSQSLNSAKANLVESSSAFKDRT
         H+ TEEANRLKDKL+SQ+LNS  ANLVESS   +DRT
Subjt:  -HVSTEEANRLKDKLSSQSLNSAKANLVESSSAFKDRT
XP_022157709.1 uncharacterized protein LOC111024362 [Momordica charantia]3.4e-2856.2Show/hide
Query:  VQKSTKVIWDTLESRYGGDDTSRRKYVLSKLLQFQMPDDKPVMDQVHEYENLVASVLFEGMEI-------------------------------------
        VQ S K+IWD LESRYG DD  R+KYV+ KL QFQM D+KP+MDQVHE+ENLVA+VL EGM+I                                     
Subjt:  VQKSTKVIWDTLESRYGGDDTSRRKYVLSKLLQFQMPDDKPVMDQVHEYENLVASVLFEGMEI-------------------------------------

Query:  -HVSTEEANRLKDKLSSQSLNSAKANLVESSSAFKDR
         H+ TEEANR KDKLSSQSLNS KANLVESSSAFKDR
Subjt:  -HVSTEEANRLKDKLSSQSLNSAKANLVESSSAFKDR
TrEMBL top hitse value%identityAlignment
A0A5A7U9X9 Ty1-copia retrotransposon protein1.6e-2653.62Show/hide
Query:  VQKSTKVIWDTLESRYGGDDTSRRKYVLSKLLQFQMPDDKPVMDQVHEYENLVASVLFEGMEI-------------------------------------
        VQKS K IW TLESRYGGDD  R+KYV+ K LQFQM DDKPVM+Q+HEYENLVA+VL EGM++                                     
Subjt:  VQKSTKVIWDTLESRYGGDDTSRRKYVLSKLLQFQMPDDKPVMDQVHEYENLVASVLFEGMEI-------------------------------------

Query:  -HVSTEEANRLKDKLSSQSLNSAKANLVESSSAFKDRT
         H+ TEEANRLKDKL+SQ+LNS  ANLVESS   +DRT
Subjt:  -HVSTEEANRLKDKLSSQSLNSAKANLVESSSAFKDRT
A0A5D3BZI1 Ty1-copia retrotransposon protein1.6e-2653.62Show/hide
Query:  VQKSTKVIWDTLESRYGGDDTSRRKYVLSKLLQFQMPDDKPVMDQVHEYENLVASVLFEGMEI-------------------------------------
        VQKS K IW TLESRYGGDD  R+KYV+ K LQFQM DDKPVM+Q+HEYENLVA+VL EGM++                                     
Subjt:  VQKSTKVIWDTLESRYGGDDTSRRKYVLSKLLQFQMPDDKPVMDQVHEYENLVASVLFEGMEI-------------------------------------

Query:  -HVSTEEANRLKDKLSSQSLNSAKANLVESSSAFKDRT
         H+ TEEANRLKDKL+SQ+LNS  ANLVESS   +DRT
Subjt:  -HVSTEEANRLKDKLSSQSLNSAKANLVESSSAFKDRT
A0A5D3CNJ2 Ty1-copia retrotransposon protein4.5e-2652.9Show/hide
Query:  VQKSTKVIWDTLESRYGGDDTSRRKYVLSKLLQFQMPDDKPVMDQVHEYENLVASVLFEGMEI-------------------------------------
        VQKS K IW TLESRYGGDD  R+KYV+ K LQFQM DDKPV++Q+HEYENLVA+VL EGM++                                     
Subjt:  VQKSTKVIWDTLESRYGGDDTSRRKYVLSKLLQFQMPDDKPVMDQVHEYENLVASVLFEGMEI-------------------------------------

Query:  -HVSTEEANRLKDKLSSQSLNSAKANLVESSSAFKDRT
         H+ TEEANRLKDKL+SQ+LNS  ANLVESS   +DRT
Subjt:  -HVSTEEANRLKDKLSSQSLNSAKANLVESSSAFKDRT
A0A5D3DSQ3 Ty1-copia retrotransposon protein4.5e-2652.9Show/hide
Query:  VQKSTKVIWDTLESRYGGDDTSRRKYVLSKLLQFQMPDDKPVMDQVHEYENLVASVLFEGMEI-------------------------------------
        VQKS K IW TLESRYGGDD  R+KYV+ K LQFQM DDKPV++Q+HEYENLVA+VL EGM++                                     
Subjt:  VQKSTKVIWDTLESRYGGDDTSRRKYVLSKLLQFQMPDDKPVMDQVHEYENLVASVLFEGMEI-------------------------------------

Query:  -HVSTEEANRLKDKLSSQSLNSAKANLVESSSAFKDRT
         H+ TEEANRLKDKL+SQ+LNS  ANLVESS   +DRT
Subjt:  -HVSTEEANRLKDKLSSQSLNSAKANLVESSSAFKDRT
A0A6J1DXB7 uncharacterized protein LOC1110243621.7e-2856.2Show/hide
Query:  VQKSTKVIWDTLESRYGGDDTSRRKYVLSKLLQFQMPDDKPVMDQVHEYENLVASVLFEGMEI-------------------------------------
        VQ S K+IWD LESRYG DD  R+KYV+ KL QFQM D+KP+MDQVHE+ENLVA+VL EGM+I                                     
Subjt:  VQKSTKVIWDTLESRYGGDDTSRRKYVLSKLLQFQMPDDKPVMDQVHEYENLVASVLFEGMEI-------------------------------------

Query:  -HVSTEEANRLKDKLSSQSLNSAKANLVESSSAFKDR
         H+ TEEANR KDKLSSQSLNS KANLVESSSAFKDR
Subjt:  -HVSTEEANRLKDKLSSQSLNSAKANLVESSSAFKDR
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G00980.1 zinc knuckle (CCHC-type) family protein2.2e-0428.99Show/hide
Query:  KSTKVIWDTLESRYGGDDTSRRKYVLSKLLQFQMPDDKPVMDQVHEYENLVASVLFEGM----EIHVST
        K  K +WD L+  Y  D++  ++  + K ++F+M +++P+++QV  +  +  S++  GM      HVST
Subjt:  KSTKVIWDTLESRYGGDDTSRRKYVLSKLLQFQMPDDKPVMDQVHEYENLVASVLFEGM----EIHVST

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGTATCGGTTCATTCATGTACCCCTCCTCTCTAGTCGGGCGTCACATGCCCACCAGCTTCCGCCTTGGTTCGTCCTCGAACCACATCTTACTGGGAGAGGAAGCAC
TCGTGTGACGGTGATGCGACCGGGTCGCAAGGGATGCAGGGGGATGCCTCTTTTAAGTAGCTTAGAACTAAATGTCCAAAAATCTACAAAGGTCATTTGGGACACATTAG
AGTCTAGATATGGCGGGGATGATACAAGTAGGAGAAAGTACGTCCTTAGTAAATTACTGCAATTTCAAATGCCAGACGACAAACCGGTGATGGATCAAGTTCATGAGTAC
GAGAACCTAGTGGCAAGTGTGCTGTTTGAAGGCATGGAGATTCATGTGAGCACGGAGGAAGCCAACAGGCTAAAGGATAAGCTCTCTTCTCAATCCCTAAATTCAGCTAA
AGCTAATTTAGTTGAATCTTCTAGTGCTTTCAAAGACAGGACTTCCCTGATGGCGAATGTGTTTTTATGGGGAATTCGGCCACAGCTGGAATACTTGGGAAAGGGAAGAA
CTATATTGGCTATCTTTAATGTATCTTGTACCCTCAAGTACGCTATTTATGCAAAAAATGTGACGGGGTATGACCTGGTCAAGGTCGGCCACAGGGAAGAGCTCGACCTG
CTCCAGGCTGAGGTACCCGACAAGGAATCCGACTATCGGTTGAGCATGTCGGGACCAAGGTCGGCCATTAGGCAAGGCCTTCAGGTCGACCCTCAGGGGAGCTCTTCAGG
TCGGCCATCAGGCAAGGCTCTTCAGGTCGGCCCTCAGTGGAGCTCTTTAGGTCTGCCACTTCAGGTGGGCCACCAAAAGGAAGATCTTCAGGTCTGCCACTTCAGGTCGG
CTAACAAAGGGAAGACCTCTAAAGTTTCTGTCCTCCACGTGGCAATACGATTTTCAACCTCCAAACATACGCAACTAATCTTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGTGGTATCGGTTCATTCATGTACCCCTCCTCTCTAGTCGGGCGTCACATGCCCACCAGCTTCCGCCTTGGTTCGTCCTCGAACCACATCTTACTGGGAGAGGAAGCAC
TCGTGTGACGGTGATGCGACCGGGTCGCAAGGGATGCAGGGGGATGCCTCTTTTAAGTAGCTTAGAACTAAATGTCCAAAAATCTACAAAGGTCATTTGGGACACATTAG
AGTCTAGATATGGCGGGGATGATACAAGTAGGAGAAAGTACGTCCTTAGTAAATTACTGCAATTTCAAATGCCAGACGACAAACCGGTGATGGATCAAGTTCATGAGTAC
GAGAACCTAGTGGCAAGTGTGCTGTTTGAAGGCATGGAGATTCATGTGAGCACGGAGGAAGCCAACAGGCTAAAGGATAAGCTCTCTTCTCAATCCCTAAATTCAGCTAA
AGCTAATTTAGTTGAATCTTCTAGTGCTTTCAAAGACAGGACTTCCCTGATGGCGAATGTGTTTTTATGGGGAATTCGGCCACAGCTGGAATACTTGGGAAAGGGAAGAA
CTATATTGGCTATCTTTAATGTATCTTGTACCCTCAAGTACGCTATTTATGCAAAAAATGTGACGGGGTATGACCTGGTCAAGGTCGGCCACAGGGAAGAGCTCGACCTG
CTCCAGGCTGAGGTACCCGACAAGGAATCCGACTATCGGTTGAGCATGTCGGGACCAAGGTCGGCCATTAGGCAAGGCCTTCAGGTCGACCCTCAGGGGAGCTCTTCAGG
TCGGCCATCAGGCAAGGCTCTTCAGGTCGGCCCTCAGTGGAGCTCTTTAGGTCTGCCACTTCAGGTGGGCCACCAAAAGGAAGATCTTCAGGTCTGCCACTTCAGGTCGG
CTAACAAAGGGAAGACCTCTAAAGTTTCTGTCCTCCACGTGGCAATACGATTTTCAACCTCCAAACATACGCAACTAATCTTCTAA
Protein sequenceShow/hide protein sequence
MWYRFIHVPLLSSRASHAHQLPPWFVLEPHLTGRGSTRVTVMRPGRKGCRGMPLLSSLELNVQKSTKVIWDTLESRYGGDDTSRRKYVLSKLLQFQMPDDKPVMDQVHEY
ENLVASVLFEGMEIHVSTEEANRLKDKLSSQSLNSAKANLVESSSAFKDRTSLMANVFLWGIRPQLEYLGKGRTILAIFNVSCTLKYAIYAKNVTGYDLVKVGHREELDL
LQAEVPDKESDYRLSMSGPRSAIRQGLQVDPQGSSSGRPSGKALQVGPQWSSLGLPLQVGHQKEDLQVCHFRSANKGKTSKVSVLHVAIRFSTSKHTQLIF