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Moc04g11190 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc04g11190
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionU11/U12 small nuclear ribonucleoprotein 48 kDa protein
Genome locationchr4:8428454..8440833
RNA-Seq ExpressionMoc04g11190
SyntenyMoc04g11190
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022144020.1 (-)-germacrene D synthase-like [Momordica charantia]7.1e-1653.04Show/hide
Query:  ILFILADTTLRSASCVDYLPLKTLAILPSLELALYALVKYSSQLNDLQLLHGNYKGLAGRTTLDKVVAMALWLRELIDYLEIIGITTQRRILGSDESSLA
        ++ I+  T   SAS VD+LPLKTLAI+PSLELALYALVKYSSQLNDLQLLHGN+   A          + LW+                RILGS+ESSL 
Subjt:  ILFILADTTLRSASCVDYLPLKTLAILPSLELALYALVKYSSQLNDLQLLHGNYKGLAGRTTLDKVVAMALWLRELIDYLEIIGITTQRRILGSDESSLA

Query:  LVVSDYCDCLVMLAI
        LVVSDY DC  ++ +
Subjt:  LVVSDYCDCLVMLAI
XP_022151686.1 U11/U12 small nuclear ribonucleoprotein 48 kDa protein [Momordica charantia]9.8e-3475.44Show/hide
Query:  ILFILADTTLRSASCVDYLPLKTLAILPSLELALYALVKYSSQLNDLQLLHGNYKGLAGRTTLDKVVAMALWLRELIDYLEIIGITTQRRILGSDESSLA
        ++ I+  T   SASC+ +LPLKTLAILPSLELA+YALVKYSSQLNDLQLL GN+ GLAGRTT DKVVA+AL +RELIDYLEIIGITTQ RILGSD SSLA
Subjt:  ILFILADTTLRSASCVDYLPLKTLAILPSLELALYALVKYSSQLNDLQLLHGNYKGLAGRTTLDKVVAMALWLRELIDYLEIIGITTQRRILGSDESSLA

Query:  LVVSDYCDCLVMLA
        LV SDY D  V  A
Subjt:  LVVSDYCDCLVMLA
TrEMBL top hitse value%identityAlignment
A0A6J1CQG9 (-)-germacrene D synthase-like3.4e-1653.04Show/hide
Query:  ILFILADTTLRSASCVDYLPLKTLAILPSLELALYALVKYSSQLNDLQLLHGNYKGLAGRTTLDKVVAMALWLRELIDYLEIIGITTQRRILGSDESSLA
        ++ I+  T   SAS VD+LPLKTLAI+PSLELALYALVKYSSQLNDLQLLHGN+   A          + LW+                RILGS+ESSL 
Subjt:  ILFILADTTLRSASCVDYLPLKTLAILPSLELALYALVKYSSQLNDLQLLHGNYKGLAGRTTLDKVVAMALWLRELIDYLEIIGITTQRRILGSDESSLA

Query:  LVVSDYCDCLVMLAI
        LVVSDY DC  ++ +
Subjt:  LVVSDYCDCLVMLAI
A0A6J1DFF2 U11/U12 small nuclear ribonucleoprotein 48 kDa protein4.8e-3475.44Show/hide
Query:  ILFILADTTLRSASCVDYLPLKTLAILPSLELALYALVKYSSQLNDLQLLHGNYKGLAGRTTLDKVVAMALWLRELIDYLEIIGITTQRRILGSDESSLA
        ++ I+  T   SASC+ +LPLKTLAILPSLELA+YALVKYSSQLNDLQLL GN+ GLAGRTT DKVVA+AL +RELIDYLEIIGITTQ RILGSD SSLA
Subjt:  ILFILADTTLRSASCVDYLPLKTLAILPSLELALYALVKYSSQLNDLQLLHGNYKGLAGRTTLDKVVAMALWLRELIDYLEIIGITTQRRILGSDESSLA

Query:  LVVSDYCDCLVMLA
        LV SDY D  V  A
Subjt:  LVVSDYCDCLVMLA
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCTCCGACGACGCAAGGGAACGACACGAACGACAGCAGCAACAACCTTCTTCTTCACAGCTTCTTCCAAGCCCGCTGGCACTCCGACGATCTCCTCCCAGTAGTGC
GTTTTTAAACCTGGCTTTAACAACATGCTTCGACCTCGATTTGGATCGGGTTCGATTTAACCGAAAGAGAAAAGACCTGGCTTTAACAACAGGCTTCGACCTCGACTTGG
ATCAGGTTCGATTTAACCGAAAGAGAAAATACAACGGACCTGACTTTAACAACAGGCTTCGACCTCGGCTTGGATCAGGCTTCGACCTCGACTTGGTTAGGGTTCGATTT
AACCGAATGAAAAATGCAACGGACCTGGCTTTAACGACAGGCTTCGACCTCGACTTGGATCAGGCTTCGACCTCAAATTGGATCGGGTTCGATTTAACCGAAGATAATGC
AATGGACCTGGCTTTAACAACAGGCTTCGACCTCGACTTGGATCGGGTTCGATTTAACCGAATGGTAAGCGTGAATCACGACGTGATGTCACGAAATTTGACGGAATATA
TGGTTGAGCAAGACACATCTAGTACTTATCGTAGCGGGAGTTTGACATCCGAGCGAGAGGTCAGACCAATTCTATTTATCCTGGCCGACACTACACTGCGTAGTGCTTCA
TGTGTTGACTATCTTCCTTTGAAAACTTTAGCCATCCTGCCTTCATTAGAACTTGCACTTTATGCTTTAGTGAAGTATAGTTCTCAGTTGAATGACCTACAACTCCTGCA
TGGTAATTACAAAGGACTTGCGGGTCGTACCACTTTGGATAAAGTGGTTGCAATGGCTCTATGGCTACGGGAGCTAATAGATTACCTTGAAATAATTGGGATAACAACTC
AACGTAGGATATTGGGATCGGATGAAAGCTCTCTCGCTTTAGTTGTCTCCGACTACTGTGATTGTCTGGTAATGTTGGCGATCTTGCATGTGGGCGGTTCTGCAGAGTCA
ATGAGTTTATGGATACTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGATCTCCGACGACGCAAGGGAACGACACGAACGACAGCAGCAACAACCTTCTTCTTCACAGCTTCTTCCAAGCCCGCTGGCACTCCGACGATCTCCTCCCAGTAGTGC
GTTTTTAAACCTGGCTTTAACAACATGCTTCGACCTCGATTTGGATCGGGTTCGATTTAACCGAAAGAGAAAAGACCTGGCTTTAACAACAGGCTTCGACCTCGACTTGG
ATCAGGTTCGATTTAACCGAAAGAGAAAATACAACGGACCTGACTTTAACAACAGGCTTCGACCTCGGCTTGGATCAGGCTTCGACCTCGACTTGGTTAGGGTTCGATTT
AACCGAATGAAAAATGCAACGGACCTGGCTTTAACGACAGGCTTCGACCTCGACTTGGATCAGGCTTCGACCTCAAATTGGATCGGGTTCGATTTAACCGAAGATAATGC
AATGGACCTGGCTTTAACAACAGGCTTCGACCTCGACTTGGATCGGGTTCGATTTAACCGAATGGTAAGCGTGAATCACGACGTGATGTCACGAAATTTGACGGAATATA
TGGTTGAGCAAGACACATCTAGTACTTATCGTAGCGGGAGTTTGACATCCGAGCGAGAGGTCAGACCAATTCTATTTATCCTGGCCGACACTACACTGCGTAGTGCTTCA
TGTGTTGACTATCTTCCTTTGAAAACTTTAGCCATCCTGCCTTCATTAGAACTTGCACTTTATGCTTTAGTGAAGTATAGTTCTCAGTTGAATGACCTACAACTCCTGCA
TGGTAATTACAAAGGACTTGCGGGTCGTACCACTTTGGATAAAGTGGTTGCAATGGCTCTATGGCTACGGGAGCTAATAGATTACCTTGAAATAATTGGGATAACAACTC
AACGTAGGATATTGGGATCGGATGAAAGCTCTCTCGCTTTAGTTGTCTCCGACTACTGTGATTGTCTGGTAATGTTGGCGATCTTGCATGTGGGCGGTTCTGCAGAGTCA
ATGAGTTTATGGATACTGTAG
Protein sequenceShow/hide protein sequence
MISDDARERHERQQQQPSSSQLLPSPLALRRSPPSSAFLNLALTTCFDLDLDRVRFNRKRKDLALTTGFDLDLDQVRFNRKRKYNGPDFNNRLRPRLGSGFDLDLVRVRF
NRMKNATDLALTTGFDLDLDQASTSNWIGFDLTEDNAMDLALTTGFDLDLDRVRFNRMVSVNHDVMSRNLTEYMVEQDTSSTYRSGSLTSEREVRPILFILADTTLRSAS
CVDYLPLKTLAILPSLELALYALVKYSSQLNDLQLLHGNYKGLAGRTTLDKVVAMALWLRELIDYLEIIGITTQRRILGSDESSLALVVSDYCDCLVMLAILHVGGSAES
MSLWIL