CuGenDBv2

Gene ID	Moc04g11600
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	CCHC-type domain-containing protein
Genome location	chr4:8755930..8756475
RNA-Seq Expression	Moc04g11600
Synteny	Moc04g11600
Gene Ontology terms	GO:0097159 - organic cyclic compound binding (molecular function) GO:1901363 - heterocyclic compound binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7561662.1 Zinc finger CCHC-type superfamily [Arabidopsis thaliana x Arabidopsis arenosa]

1.2e-30

42.78

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Query:  MQVKDLLTCKKIHKTLGERPANMTDKAWNEMDEQAVANIRMTLSMGVCSLVAKEMTAKELLKALQNRYEKPSTNTKIFLWTKYFNIHMKEGTSVNSHINE
        MQ++D L  KK+H+ L  +P  M  + W+ +D Q +  IR+TLS  V   VAKE T + L+K L + YEKPS N K+FL  K F++ M+EG  V +H+NE
Subjt:  MQVKDLLTCKKIHKTLGERPANMTDKAWNEMDEQAVANIRMTLSMGVCSLVAKEMTAKELLKALQNRYEKPSTNTKIFLWTKYFNIHMKEGTSVNSHINE

Query:  LTDILNKLEGMGVKIEEEVKAMRLLMSLPDSWETMKTAVSNLLGENSLKFSAICDVALSEEAQR-KLGKMSVTTS-GVEN
           I+N+L  + ++ ++EV+A+ L+ SLP+SWE M+ AVSN +G   LKF  + D  L EE +R   G+ S +++  VEN
Subjt:  LTDILNKLEGMGVKIEEEVKAMRLLMSLPDSWETMKTAVSNLLGENSLKFSAICDVALSEEAQR-KLGKMSVTTS-GVEN

KAG7584790.1 Zinc finger CCHC-type superfamily [Arabidopsis thaliana x Arabidopsis arenosa]

5.5e-31

43.33

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Query:  MQVKDLLTCKKIHKTLGERPANMTDKAWNEMDEQAVANIRMTLSMGVCSLVAKEMTAKELLKALQNRYEKPSTNTKIFLWTKYFNIHMKEGTSVNSHINE
        MQ++D L  KK+H+ L  +P  M  + W+ +D Q +  IR+TLS  V   VAKE T + L+K L + YEKPS N K+FL  K F++ M+EG  V +H+NE
Subjt:  MQVKDLLTCKKIHKTLGERPANMTDKAWNEMDEQAVANIRMTLSMGVCSLVAKEMTAKELLKALQNRYEKPSTNTKIFLWTKYFNIHMKEGTSVNSHINE

Query:  LTDILNKLEGMGVKIEEEVKAMRLLMSLPDSWETMKTAVSNLLGENSLKFSAICDVALSEEAQR-KLGKMSVTTS-GVEN
           I+N+L  + ++ ++EV+A+ LL SLP+SWE M+ AVSN +G   LKF  + D  L EE +R   G+ S++++  VEN
Subjt:  LTDILNKLEGMGVKIEEEVKAMRLLMSLPDSWETMKTAVSNLLGENSLKFSAICDVALSEEAQR-KLGKMSVTTS-GVEN

KAG7593230.1 Pentatricopeptide repeat [Arabidopsis thaliana x Arabidopsis arenosa]

7.1e-31

43.33

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Query:  MQVKDLLTCKKIHKTLGERPANMTDKAWNEMDEQAVANIRMTLSMGVCSLVAKEMTAKELLKALQNRYEKPSTNTKIFLWTKYFNIHMKEGTSVNSHINE
        MQ++D L  KK+H+ L  +P  M  + W+ +D Q +  IR+TLS  V   VAKE T + L+K L + YEKPS N K+FL  K F++ M+EG  V +H+NE
Subjt:  MQVKDLLTCKKIHKTLGERPANMTDKAWNEMDEQAVANIRMTLSMGVCSLVAKEMTAKELLKALQNRYEKPSTNTKIFLWTKYFNIHMKEGTSVNSHINE

Query:  LTDILNKLEGMGVKIEEEVKAMRLLMSLPDSWETMKTAVSNLLGENSLKFSAICDVALSEEAQR-KLGKMSVTTS-GVEN
           I+N+L  + ++ ++EV+A+ LL SLP+SWE M+ AVSN +G   LKF  + D  L EE +R   G+ S +++  VEN
Subjt:  LTDILNKLEGMGVKIEEEVKAMRLLMSLPDSWETMKTAVSNLLGENSLKFSAICDVALSEEAQR-KLGKMSVTTS-GVEN

VDD56318.1 unnamed protein product [Brassica oleracea]

1.9e-31

43.33

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Query:  MQVKDLLTCKKIHKTLGERPANMTDKAWNEMDEQAVANIRMTLSMGVCSLVAKEMTAKELLKALQNRYEKPSTNTKIFLWTKYFNIHMKEGTSVNSHINE
        MQ++D L  KK+H+ L ++P  +    W  +D Q +  IR+TLS  V   VAKE T + L+K L + YEKPS N K+FL  K F++ M+EG  V +H+NE
Subjt:  MQVKDLLTCKKIHKTLGERPANMTDKAWNEMDEQAVANIRMTLSMGVCSLVAKEMTAKELLKALQNRYEKPSTNTKIFLWTKYFNIHMKEGTSVNSHINE

Query:  LTDILNKLEGMGVKIEEEVKAMRLLMSLPDSWETMKTAVSNLLGENSLKFSAICDVALSEEAQR-KLGKMSVTTS-GVEN
           I+N+L  + ++ E+EV+A+ LL SLP+SWE M+ AVSN +G   LKF+ + D  L+EE +R   G+ S +++  VEN
Subjt:  LTDILNKLEGMGVKIEEEVKAMRLLMSLPDSWETMKTAVSNLLGENSLKFSAICDVALSEEAQR-KLGKMSVTTS-GVEN

VFQ71379.1 unnamed protein product [Cuscuta campestris]

1.4e-31

46.06

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Query:  MQVKDLLTCKKIHKTLGERPANMTDKAWNEMDEQAVANIRMTLSMGVCSLVAKEMTAKELLKALQNRYEKPSTNTKIFLWTKYFNIHMKEGTSVNSHINE
        MQ++DLL  K ++  LG++P  M+D  W  +D +A++ IR++L+  V   + KE TAK +L AL N YEKPST  K+FL  +  N  MKEGTSV  HIN+
Subjt:  MQVKDLLTCKKIHKTLGERPANMTDKAWNEMDEQAVANIRMTLSMGVCSLVAKEMTAKELLKALQNRYEKPSTNTKIFLWTKYFNIHMKEGTSVNSHINE

Query:  LTDILNKLEGMGVKIEEEVKAMRLLMSLPDSWETMKTAVSNLLGENSLKFSAICDVALSEEAQRK
        L  IL +L  +G+K ++EVKA+ LL SLPDSW    TAV+  +G +   F  I D+ L E+ +RK
Subjt:  LTDILNKLEGMGVKIEEEVKAMRLLMSLPDSWETMKTAVSNLLGENSLKFSAICDVALSEEAQRK

TrEMBL top hits

e value

%identity

Alignment

A0A0D3AEM1 CCHC-type domain-containing protein

9.1e-32

43.89

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Query:  MQVKDLLTCKKIHKTLGERPANMTDKAWNEMDEQAVANIRMTLSMGVCSLVAKEMTAKELLKALQNRYEKPSTNTKIFLWTKYFNIHMKEGTSVNSHINE
        MQ++D L  KK+H+ L ++P  M    W  +D Q +  IR+TLS  V   V KE T + L+K L + YEKPS N+K+FL  K F++ M+EG  V +HINE
Subjt:  MQVKDLLTCKKIHKTLGERPANMTDKAWNEMDEQAVANIRMTLSMGVCSLVAKEMTAKELLKALQNRYEKPSTNTKIFLWTKYFNIHMKEGTSVNSHINE

Query:  LTDILNKLEGMGVKIEEEVKAMRLLMSLPDSWETMKTAVSNLLGENSLKFSAICDVALSEEAQR-KLGKMSVTTS-GVEN
           I+N+L  + ++ E+EV+A+ LL SLP+SWE+M+ AVSN +G   LKF+ + D  L+EE +R   G+ S +++  VEN
Subjt:  LTDILNKLEGMGVKIEEEVKAMRLLMSLPDSWETMKTAVSNLLGENSLKFSAICDVALSEEAQR-KLGKMSVTTS-GVEN

A0A0D3BM55 Uncharacterized protein

1.2e-31

43.89

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Query:  MQVKDLLTCKKIHKTLGERPANMTDKAWNEMDEQAVANIRMTLSMGVCSLVAKEMTAKELLKALQNRYEKPSTNTKIFLWTKYFNIHMKEGTSVNSHINE
        MQ++D L  KK+H+TL ++P  M    W  +D Q +  IR+TLS  V   VAKE T + L+K L + YEKPS N K+FL  K F++ M+EG  V +H+NE
Subjt:  MQVKDLLTCKKIHKTLGERPANMTDKAWNEMDEQAVANIRMTLSMGVCSLVAKEMTAKELLKALQNRYEKPSTNTKIFLWTKYFNIHMKEGTSVNSHINE

Query:  LTDILNKLEGMGVKIEEEVKAMRLLMSLPDSWETMKTAVSNLLGENSLKFSAICDVALSEEAQR-KLGKMSVTTS-GVEN
           I+N+L  + ++ ++EV+A+ LL SLP+SWE M+ AVSN +G   LKF+ + D  L+EE +R   G+ S +++  VEN
Subjt:  LTDILNKLEGMGVKIEEEVKAMRLLMSLPDSWETMKTAVSNLLGENSLKFSAICDVALSEEAQR-KLGKMSVTTS-GVEN

A0A2N9IKI1 Uncharacterized protein

7.7e-31

45.18

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Query:  MQVKDLLTCKKIH-KTLGERPANMTDKAWNEMDEQAVANIRMTLSMGVCSLVAKEMTAKELLKALQNRYEKPSTNTKIFLWTKYFNIHMKEGTSVNSHIN
        MQ++D L  KK+H   LGE+P +M D  W  +D Q +  IR+TLS  V   V KE T  EL+ AL   YEKPS N K+ L  K FN+ M EGT+V  H+N
Subjt:  MQVKDLLTCKKIH-KTLGERPANMTDKAWNEMDEQAVANIRMTLSMGVCSLVAKEMTAKELLKALQNRYEKPSTNTKIFLWTKYFNIHMKEGTSVNSHIN

Query:  ELTDILNKLEGMGVKIEEEVKAMRLLMSLPDSWETMKTAVSNLLGENSLKFSAICDVALSEEAQRK
        E   I N+L  + ++ ++E++A+ +L SLP+SWE M+ AVSN  G+  LK++ I D+ L EE +R+
Subjt:  ELTDILNKLEGMGVKIEEEVKAMRLLMSLPDSWETMKTAVSNLLGENSLKFSAICDVALSEEAQRK

A0A3P6FTI2 Abhydrolase_3 domain-containing protein

9.1e-32

43.33

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Query:  MQVKDLLTCKKIHKTLGERPANMTDKAWNEMDEQAVANIRMTLSMGVCSLVAKEMTAKELLKALQNRYEKPSTNTKIFLWTKYFNIHMKEGTSVNSHINE
        MQ++D L  KK+H+ L ++P  +    W  +D Q +  IR+TLS  V   VAKE T + L+K L + YEKPS N K+FL  K F++ M+EG  V +H+NE
Subjt:  MQVKDLLTCKKIHKTLGERPANMTDKAWNEMDEQAVANIRMTLSMGVCSLVAKEMTAKELLKALQNRYEKPSTNTKIFLWTKYFNIHMKEGTSVNSHINE

Query:  LTDILNKLEGMGVKIEEEVKAMRLLMSLPDSWETMKTAVSNLLGENSLKFSAICDVALSEEAQR-KLGKMSVTTS-GVEN
           I+N+L  + ++ E+EV+A+ LL SLP+SWE M+ AVSN +G   LKF+ + D  L+EE +R   G+ S +++  VEN
Subjt:  LTDILNKLEGMGVKIEEEVKAMRLLMSLPDSWETMKTAVSNLLGENSLKFSAICDVALSEEAQR-KLGKMSVTTS-GVEN

A0A484L4X7 CCHC-type domain-containing protein

7.0e-32

46.06

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Query:  MQVKDLLTCKKIHKTLGERPANMTDKAWNEMDEQAVANIRMTLSMGVCSLVAKEMTAKELLKALQNRYEKPSTNTKIFLWTKYFNIHMKEGTSVNSHINE
        MQ++DLL  K ++  LG++P  M+D  W  +D +A++ IR++L+  V   + KE TAK +L AL N YEKPST  K+FL  +  N  MKEGTSV  HIN+
Subjt:  MQVKDLLTCKKIHKTLGERPANMTDKAWNEMDEQAVANIRMTLSMGVCSLVAKEMTAKELLKALQNRYEKPSTNTKIFLWTKYFNIHMKEGTSVNSHINE

Query:  LTDILNKLEGMGVKIEEEVKAMRLLMSLPDSWETMKTAVSNLLGENSLKFSAICDVALSEEAQRK
        L  IL +L  +G+K ++EVKA+ LL SLPDSW    TAV+  +G +   F  I D+ L E+ +RK
Subjt:  LTDILNKLEGMGVKIEEEVKAMRLLMSLPDSWETMKTAVSNLLGENSLKFSAICDVALSEEAQRK

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

3.0e-08

25.52

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Query:  QVKDLLTCKKIHKTLGERPANMTDKAWNEMDEQAVANIRMTLSMGVCSLVAKEMTAKELLKALQNRYEKPSTNTKIFLWTKYFNIHMKEGTSVNSHINEL
        +++ LL  + + K +     N  D +W + +  A + I   LS    +    ++TA+++L+ L   YE+ S  +++ L  +  ++ +    S+ SH +  
Subjt:  QVKDLLTCKKIHKTLGERPANMTDKAWNEMDEQAVANIRMTLSMGVCSLVAKEMTAKELLKALQNRYEKPSTNTKIFLWTKYFNIHMKEGTSVNSHINEL

Query:  TDILNKLEGMGVKIEEEVKAMRLLMSLPDSWETMKTAVSNLLGEN
         +++++L   G KIEE  K   LL++LP  ++ + TA+  L  EN
Subjt:  TDILNKLEGMGVKIEEEVKAMRLLMSLPDSWETMKTAVSNLLGEN

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.1e-18

32.93

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Query:  QVKDLLTCKKIHKTL---GERPANMTDKAWNEMDEQAVANIRMTLSMGVCSLVAKEMTAKELLKALQNRYEKPSTNTKIFLWTKYFNIHMKEGTSVNSHI
        +++DLL  + +HK L    ++P  M  + W ++DE+A + IR+ LS  V + +  E TA+ +   L++ Y   +   K++L  + + +HM EGT+  SH+
Subjt:  QVKDLLTCKKIHKTL---GERPANMTDKAWNEMDEQAVANIRMTLSMGVCSLVAKEMTAKELLKALQNRYEKPSTNTKIFLWTKYFNIHMKEGTSVNSHI

Query:  NELTDILNKLEGMGVKIEEEVKAMRLLMSLPDSWETMKTAVSNLLGENSLKFSAICDVALSEEAQRK
        N    ++ +L  +GVKIEEE KA+ LL SLP S++ + T +  L G+ +++   +    L  E  RK
Subjt:  NELTDILNKLEGMGVKIEEEVKAMRLLMSLPDSWETMKTAVSNLLGENSLKFSAICDVALSEEAQRK

Arabidopsis top hits

e value

%identity

Alignment

AT3G29785.1 unknown protein

6.3e-09

37.66

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Query:  MQVKDLLTCKKIHKTLGERPANMTDKAWNEMDEQAVANIRMTLSMGVCSLVAKEMTAKELLKALQNRYEKPSTNTKI
        M+++D L  KK+H+ LG++   M+   WN +  Q +  IR+T+S  +   VAKE +   L+K L + Y+KPSTN  +
Subjt:  MQVKDLLTCKKIHKTLGERPANMTDKAWNEMDEQAVANIRMTLSMGVCSLVAKEMTAKELLKALQNRYEKPSTNTKI

Sequences

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CDS sequence

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ATGCAAGTAAAAGATCTTCTTACGTGCAAGAAGATACACAAGACTTTGGGGGAGAGACCAGCGAATATGACAGACAAAGCTTGGAATGAGATGGATGAGCAGGCC
GTTGCAAATATCAGAATGACACTATCAATGGGGGTATGTAGTCTCGTGGCGAAAGAGATGACTGCAAAAGAGTTGTTGAAGGCCTTGCAAAACAGGTATGAAAAA
CCTTCTACCAATACAAAAATATTTCTATGGACGAAGTATTTTAATATTCACATGAAGGAGGGAACCTCGGTGAATTCCCACATTAATGAGCTCACCGATATCTTG
AACAAGTTAGAAGGGATGGGTGTCAAGATTGAAGAGGAGGTGAAAGCTATGAGGCTGTTGATGTCTTTGCCTGATAGTTGGGAGACGATGAAGACCGCGGTGTCG
AATTTGCTAGGAGAAAATAGCTTGAAGTTTTCAGCTATTTGTGATGTCGCCTTATCTGAAGAAGCCCAGAGAAAATTAGGAAAAATGTCTGTAACTACTTCAGGG
GTAGAAAATGGGGTTGAATAA

mRNA sequence

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Protein sequence

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MQVKDLLTCKKIHKTLGERPANMTDKAWNEMDEQAVANIRMTLSMGVCSLVAKEMTAKELLKALQNRYEKPSTNTKIFLWTKYFNIHMKEGTSVNSHINELTDIL
NKLEGMGVKIEEEVKAMRLLMSLPDSWETMKTAVSNLLGENSLKFSAICDVALSEEAQRKLGKMSVTTSGVENGVE

Moc04g11600 (gene) of Bitter gourd (OHB3-1) v2 genome