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Moc04g11770 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc04g11770
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr4:8827876..8828764
RNA-Seq ExpressionMoc04g11770
SyntenyMoc04g11770
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022141796.1 uncharacterized protein LOC111012081 [Momordica charantia]7.4e-3153.24Show/hide
Query:  EVLQGPVDPHPVAEQEEQPFSQAILDAPIPLRFKALVMSSYDGSGDPISYVEVFEGKMDFLAASGAMKCRAFQIALEGSARLWYRQLKAWSIDSYQQLMR
        E  +GP++     +  E PF+  +L+APIP +FKA  +  YDGS DP  YVEVFEG MDF A S A+KCRAFQIAL GSARLWYR+L A SI +Y QL R
Subjt:  EVLQGPVDPHPVAEQEEQPFSQAILDAPIPLRFKALVMSSYDGSGDPISYVEVFEGKMDFLAASGAMKCRAFQIALEGSARLWYRQLKAWSIDSYQQLMR

Query:  LFINQFSARQLLKLPPSHLGTLKQRDNESLTEYIARFMD
         F+ QFS+R   K   +HL T++Q++ E+L EY+ RF +
Subjt:  LFINQFSARQLLKLPPSHLGTLKQRDNESLTEYIARFMD

XP_022152033.1 uncharacterized protein LOC111019842 [Momordica charantia]3.7e-3056.91Show/hide
Query:  EQPFSQAILDAPIPLRFKALVMSSYDGSGDPISYVEVFEGKMDFLAASGAMKCRAFQIALEGSARLWYRQLKAWSIDSYQQLMRLFINQFSARQLLKLPP
        E PF+  +L+APIP +FKA  +  YDGS DP  YVEVFEG MDF AAS  +KCRAFQIAL  SARLWYR+L A SI +Y QL R F+ QFS+R   K   
Subjt:  EQPFSQAILDAPIPLRFKALVMSSYDGSGDPISYVEVFEGKMDFLAASGAMKCRAFQIALEGSARLWYRQLKAWSIDSYQQLMRLFINQFSARQLLKLPP

Query:  SHLGTLKQRDNESLTEYIARFMD
        +HL T++Q++ E+L EY+ RF +
Subjt:  SHLGTLKQRDNESLTEYIARFMD

XP_022152851.1 uncharacterized protein LOC111020475 [Momordica charantia]6.7e-4086.27Show/hide
Query:  MSSYDGSGDPISYVEVFEGKMDFLAASGAMKCRAFQIALEGSARLWYRQLKAWSIDSYQQLMRLFINQFSARQLLKLPPSHLGTLKQRDNESLTEYIARF
        MSSYDGSGDPISYVEVFEGKMDFLA S AMKC AFQI LEGS RLWYRQLK  SIDSYQQL RLFINQFS RQ LKLP SHLGT+KQRDNES T YIARF
Subjt:  MSSYDGSGDPISYVEVFEGKMDFLAASGAMKCRAFQIALEGSARLWYRQLKAWSIDSYQQLMRLFINQFSARQLLKLPPSHLGTLKQRDNESLTEYIARF

Query:  MD
        MD
Subjt:  MD

XP_022156542.1 uncharacterized protein LOC111023421 [Momordica charantia]2.2e-3056.91Show/hide
Query:  EQPFSQAILDAPIPLRFKALVMSSYDGSGDPISYVEVFEGKMDFLAASGAMKCRAFQIALEGSARLWYRQLKAWSIDSYQQLMRLFINQFSARQLLKLPP
        E PF+  +L+APIP +FKA  +  YDG+ DP  YVEVFEG MDF AAS A+KCRAFQIAL GSARLWYR+L   SI +Y QL R F+ QFS+R   K   
Subjt:  EQPFSQAILDAPIPLRFKALVMSSYDGSGDPISYVEVFEGKMDFLAASGAMKCRAFQIALEGSARLWYRQLKAWSIDSYQQLMRLFINQFSARQLLKLPP

Query:  SHLGTLKQRDNESLTEYIARFMD
        +HL T++Q++ E+L EY+ RF +
Subjt:  SHLGTLKQRDNESLTEYIARFMD

XP_022159250.1 uncharacterized protein LOC111025663 [Momordica charantia]2.2e-3056.91Show/hide
Query:  EQPFSQAILDAPIPLRFKALVMSSYDGSGDPISYVEVFEGKMDFLAASGAMKCRAFQIALEGSARLWYRQLKAWSIDSYQQLMRLFINQFSARQLLKLPP
        E PF+  IL+APIP +FK   M  YDGS DP  YVEVFEG MDF AA+ A+KCRAFQIAL  SARLWYR+L A SI +Y QL + FI+QFS+R   +   
Subjt:  EQPFSQAILDAPIPLRFKALVMSSYDGSGDPISYVEVFEGKMDFLAASGAMKCRAFQIALEGSARLWYRQLKAWSIDSYQQLMRLFINQFSARQLLKLPP

Query:  SHLGTLKQRDNESLTEYIARFMD
        +HL T++Q++ E+L EY+ RF++
Subjt:  SHLGTLKQRDNESLTEYIARFMD

TrEMBL top hitse value%identityAlignment
A0A6J1CKB3 uncharacterized protein LOC1110120813.6e-3153.24Show/hide
Query:  EVLQGPVDPHPVAEQEEQPFSQAILDAPIPLRFKALVMSSYDGSGDPISYVEVFEGKMDFLAASGAMKCRAFQIALEGSARLWYRQLKAWSIDSYQQLMR
        E  +GP++     +  E PF+  +L+APIP +FKA  +  YDGS DP  YVEVFEG MDF A S A+KCRAFQIAL GSARLWYR+L A SI +Y QL R
Subjt:  EVLQGPVDPHPVAEQEEQPFSQAILDAPIPLRFKALVMSSYDGSGDPISYVEVFEGKMDFLAASGAMKCRAFQIALEGSARLWYRQLKAWSIDSYQQLMR

Query:  LFINQFSARQLLKLPPSHLGTLKQRDNESLTEYIARFMD
         F+ QFS+R   K   +HL T++Q++ E+L EY+ RF +
Subjt:  LFINQFSARQLLKLPPSHLGTLKQRDNESLTEYIARFMD

A0A6J1DDS5 uncharacterized protein LOC1110198421.8e-3056.91Show/hide
Query:  EQPFSQAILDAPIPLRFKALVMSSYDGSGDPISYVEVFEGKMDFLAASGAMKCRAFQIALEGSARLWYRQLKAWSIDSYQQLMRLFINQFSARQLLKLPP
        E PF+  +L+APIP +FKA  +  YDGS DP  YVEVFEG MDF AAS  +KCRAFQIAL  SARLWYR+L A SI +Y QL R F+ QFS+R   K   
Subjt:  EQPFSQAILDAPIPLRFKALVMSSYDGSGDPISYVEVFEGKMDFLAASGAMKCRAFQIALEGSARLWYRQLKAWSIDSYQQLMRLFINQFSARQLLKLPP

Query:  SHLGTLKQRDNESLTEYIARFMD
        +HL T++Q++ E+L EY+ RF +
Subjt:  SHLGTLKQRDNESLTEYIARFMD

A0A6J1DIZ8 uncharacterized protein LOC1110204753.2e-4086.27Show/hide
Query:  MSSYDGSGDPISYVEVFEGKMDFLAASGAMKCRAFQIALEGSARLWYRQLKAWSIDSYQQLMRLFINQFSARQLLKLPPSHLGTLKQRDNESLTEYIARF
        MSSYDGSGDPISYVEVFEGKMDFLA S AMKC AFQI LEGS RLWYRQLK  SIDSYQQL RLFINQFS RQ LKLP SHLGT+KQRDNES T YIARF
Subjt:  MSSYDGSGDPISYVEVFEGKMDFLAASGAMKCRAFQIALEGSARLWYRQLKAWSIDSYQQLMRLFINQFSARQLLKLPPSHLGTLKQRDNESLTEYIARF

Query:  MD
        MD
Subjt:  MD

A0A6J1DS95 uncharacterized protein LOC1110234211.0e-3056.91Show/hide
Query:  EQPFSQAILDAPIPLRFKALVMSSYDGSGDPISYVEVFEGKMDFLAASGAMKCRAFQIALEGSARLWYRQLKAWSIDSYQQLMRLFINQFSARQLLKLPP
        E PF+  +L+APIP +FKA  +  YDG+ DP  YVEVFEG MDF AAS A+KCRAFQIAL GSARLWYR+L   SI +Y QL R F+ QFS+R   K   
Subjt:  EQPFSQAILDAPIPLRFKALVMSSYDGSGDPISYVEVFEGKMDFLAASGAMKCRAFQIALEGSARLWYRQLKAWSIDSYQQLMRLFINQFSARQLLKLPP

Query:  SHLGTLKQRDNESLTEYIARFMD
        +HL T++Q++ E+L EY+ RF +
Subjt:  SHLGTLKQRDNESLTEYIARFMD

A0A6J1DY58 uncharacterized protein LOC1110256631.0e-3056.91Show/hide
Query:  EQPFSQAILDAPIPLRFKALVMSSYDGSGDPISYVEVFEGKMDFLAASGAMKCRAFQIALEGSARLWYRQLKAWSIDSYQQLMRLFINQFSARQLLKLPP
        E PF+  IL+APIP +FK   M  YDGS DP  YVEVFEG MDF AA+ A+KCRAFQIAL  SARLWYR+L A SI +Y QL + FI+QFS+R   +   
Subjt:  EQPFSQAILDAPIPLRFKALVMSSYDGSGDPISYVEVFEGKMDFLAASGAMKCRAFQIALEGSARLWYRQLKAWSIDSYQQLMRLFINQFSARQLLKLPP

Query:  SHLGTLKQRDNESLTEYIARFMD
        +HL T++Q++ E+L EY+ RF++
Subjt:  SHLGTLKQRDNESLTEYIARFMD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTAACTGACGTGATCGCTGAGCTTACGGAAGTCAAGGTGAGGCTCGAAGTGGTCGAAAGAGGCAACGAGATGTCCGACTCCTCCGTCTCCAGGGATCCCATTCGAGG
AAAAGGCCCGGTGCATCCAACCCAAAGAACGGAATATCATTTTCGACCTCGTAGGGAGGCCCGAGCTAGGGTACCCTCTCGAAGGCCACAACGGGCGGAGATAGGCGGTG
CCCTGGGAGCGCAGGGCCACCAAGGCGACGAGGGGTGGCGCCTAAAGATCGGGAGTACTGGACCGACAACAAGGAGGGAAGCCCGAGGTCGACAATCGGGAGAGGTCCTC
CAAGGGCCTGTAGATCCGCATCCCGTGGCCGAGCAAGAGGAGCAGCCTTTCTCCCAAGCAATCTTGGACGCACCTATCCCACTGAGGTTCAAAGCCCTGGTCATGAGCTC
CTACGACGGGTCTGGAGATCCGATCTCTTACGTGGAGGTGTTTGAAGGGAAGATGGATTTCCTGGCCGCGAGTGGCGCCATGAAGTGCCGAGCATTTCAGATAGCCTTGG
AAGGCTCGGCAAGGTTGTGGTACCGACAGTTGAAGGCCTGGTCCATCGACAGTTATCAACAGTTGATGAGGTTGTTCATCAACCAGTTTTCGGCTCGGCAGTTGCTGAAG
TTACCGCCCTCTCACCTCGGAACATTGAAGCAACGGGACAATGAGTCCCTGACGGAGTACATCGCTCGGTTCATGGATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTAACTGACGTGATCGCTGAGCTTACGGAAGTCAAGGTGAGGCTCGAAGTGGTCGAAAGAGGCAACGAGATGTCCGACTCCTCCGTCTCCAGGGATCCCATTCGAGG
AAAAGGCCCGGTGCATCCAACCCAAAGAACGGAATATCATTTTCGACCTCGTAGGGAGGCCCGAGCTAGGGTACCCTCTCGAAGGCCACAACGGGCGGAGATAGGCGGTG
CCCTGGGAGCGCAGGGCCACCAAGGCGACGAGGGGTGGCGCCTAAAGATCGGGAGTACTGGACCGACAACAAGGAGGGAAGCCCGAGGTCGACAATCGGGAGAGGTCCTC
CAAGGGCCTGTAGATCCGCATCCCGTGGCCGAGCAAGAGGAGCAGCCTTTCTCCCAAGCAATCTTGGACGCACCTATCCCACTGAGGTTCAAAGCCCTGGTCATGAGCTC
CTACGACGGGTCTGGAGATCCGATCTCTTACGTGGAGGTGTTTGAAGGGAAGATGGATTTCCTGGCCGCGAGTGGCGCCATGAAGTGCCGAGCATTTCAGATAGCCTTGG
AAGGCTCGGCAAGGTTGTGGTACCGACAGTTGAAGGCCTGGTCCATCGACAGTTATCAACAGTTGATGAGGTTGTTCATCAACCAGTTTTCGGCTCGGCAGTTGCTGAAG
TTACCGCCCTCTCACCTCGGAACATTGAAGCAACGGGACAATGAGTCCCTGACGGAGTACATCGCTCGGTTCATGGATTAG
Protein sequenceShow/hide protein sequence
MVTDVIAELTEVKVRLEVVERGNEMSDSSVSRDPIRGKGPVHPTQRTEYHFRPRREARARVPSRRPQRAEIGGALGAQGHQGDEGWRLKIGSTGPTTRREARGRQSGEVL
QGPVDPHPVAEQEEQPFSQAILDAPIPLRFKALVMSSYDGSGDPISYVEVFEGKMDFLAASGAMKCRAFQIALEGSARLWYRQLKAWSIDSYQQLMRLFINQFSARQLLK
LPPSHLGTLKQRDNESLTEYIARFMD