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Moc04g12030 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc04g12030
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionU11/U12 small nuclear ribonucleoprotein 48 kDa protein
Genome locationchr4:9036891..9042126
RNA-Seq ExpressionMoc04g12030
SyntenyMoc04g12030
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022144020.1 (-)-germacrene D synthase-like [Momordica charantia]1.4e-1046.67Show/hide
Query:  YAQDRLDSKRTRLKLLYGNHNEHAGCTTLDNKVVVMALRVRELMDYLEIIGITTRYSILGLDESSLALVVFDYYDCQELVSFSWKAERHVTNCAGGSHLL
        YA  +  S+   L+LL+GNH+EHA          V+ L +R                ILG +ESSL LVV DYYDCQELV  SWKAE  V N AGGS LL
Subjt:  YAQDRLDSKRTRLKLLYGNHNEHAGCTTLDNKVVVMALRVRELMDYLEIIGITTRYSILGLDESSLALVVFDYYDCQELVSFSWKAERHVTNCAGGSHLL

Query:  IYKED
          KE+
Subjt:  IYKED
XP_022151686.1 U11/U12 small nuclear ribonucleoprotein 48 kDa protein [Momordica charantia]2.6e-1264Show/hide
Query:  YAQDRLDSKRTRLKLLYGNHNEHAGCTTLDNKVVVMALRVRELMDYLEIIGITTRYSILGLDESSLALVVFDYYD
        YA  +  S+   L+LL GNH+  AG TT D KVV +ALRVREL+DYLEIIGITT+  ILG D SSLALV  DYYD
Subjt:  YAQDRLDSKRTRLKLLYGNHNEHAGCTTLDNKVVVMALRVRELMDYLEIIGITTRYSILGLDESSLALVVFDYYD
TrEMBL top hitse value%identityAlignment
A0A6J1CQG9 (-)-germacrene D synthase-like6.8e-1146.67Show/hide
Query:  YAQDRLDSKRTRLKLLYGNHNEHAGCTTLDNKVVVMALRVRELMDYLEIIGITTRYSILGLDESSLALVVFDYYDCQELVSFSWKAERHVTNCAGGSHLL
        YA  +  S+   L+LL+GNH+EHA          V+ L +R                ILG +ESSL LVV DYYDCQELV  SWKAE  V N AGGS LL
Subjt:  YAQDRLDSKRTRLKLLYGNHNEHAGCTTLDNKVVVMALRVRELMDYLEIIGITTRYSILGLDESSLALVVFDYYDCQELVSFSWKAERHVTNCAGGSHLL

Query:  IYKED
          KE+
Subjt:  IYKED
A0A6J1DFF2 U11/U12 small nuclear ribonucleoprotein 48 kDa protein1.2e-1264Show/hide
Query:  YAQDRLDSKRTRLKLLYGNHNEHAGCTTLDNKVVVMALRVRELMDYLEIIGITTRYSILGLDESSLALVVFDYYD
        YA  +  S+   L+LL GNH+  AG TT D KVV +ALRVREL+DYLEIIGITT+  ILG D SSLALV  DYYD
Subjt:  YAQDRLDSKRTRLKLLYGNHNEHAGCTTLDNKVVVMALRVRELMDYLEIIGITTRYSILGLDESSLALVVFDYYD
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAACCGACACTACACTACTTAGGTGGATAATTTTGGACGTTTACCACCAATTAGATGTGGCAGGCTTGGTAAATGGCTTTTATGGCTATGCTCAAGATAGGTTAGA
CTCAAAGCGGACTAGGCTCAAGCTCCTGTATGGTAATCACAACGAACATGCGGGTTGTACCACTTTGGATAATAAGGTGGTTGTAATGGCTCTACGGGTACGGGAGCTAA
TGGATTACCTTGAAATAATTGGGATAACAACTCGGTATAGTATATTGGGATTGGATGAAAGCTCACTCGCTTTAGTTGTCTTCGACTACTATGATTGTCAGGAGCTTGTT
AGCTTTTCATGGAAAGCTGAGCGTCATGTGACGAACTGTGCTGGGGGAAGCCATCTGTTGATTTACAAAGAGGATAATGACTCTCAAATCTTCCATATGCTTTTGCAGTA
TGGTCGACTTGAGTGGAGAATTTCATGCACCTGCACGGGAACCAAAATTCCACAAAGGTCACACTACTCAGTCTCCGATCTAATCCTAAGGGTAAAGCCCGGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCAACCGACACTACACTACTTAGGTGGATAATTTTGGACGTTTACCACCAATTAGATGTGGCAGGCTTGGTAAATGGCTTTTATGGCTATGCTCAAGATAGGTTAGA
CTCAAAGCGGACTAGGCTCAAGCTCCTGTATGGTAATCACAACGAACATGCGGGTTGTACCACTTTGGATAATAAGGTGGTTGTAATGGCTCTACGGGTACGGGAGCTAA
TGGATTACCTTGAAATAATTGGGATAACAACTCGGTATAGTATATTGGGATTGGATGAAAGCTCACTCGCTTTAGTTGTCTTCGACTACTATGATTGTCAGGAGCTTGTT
AGCTTTTCATGGAAAGCTGAGCGTCATGTGACGAACTGTGCTGGGGGAAGCCATCTGTTGATTTACAAAGAGGATAATGACTCTCAAATCTTCCATATGCTTTTGCAGTA
TGGTCGACTTGAGTGGAGAATTTCATGCACCTGCACGGGAACCAAAATTCCACAAAGGTCACACTACTCAGTCTCCGATCTAATCCTAAGGGTAAAGCCCGGGTAG
Protein sequenceShow/hide protein sequence
MATDTTLLRWIILDVYHQLDVAGLVNGFYGYAQDRLDSKRTRLKLLYGNHNEHAGCTTLDNKVVVMALRVRELMDYLEIIGITTRYSILGLDESSLALVVFDYYDCQELV
SFSWKAERHVTNCAGGSHLLIYKEDNDSQIFHMLLQYGRLEWRISCTCTGTKIPQRSHYSVSDLILRVKPG