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Moc04g12070 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc04g12070
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionGypsy-like retrotransposase
Genome locationchr4:9108355..9111905
RNA-Seq ExpressionMoc04g12070
SyntenyMoc04g12070
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039557.1 uncharacterized protein E6C27_scaffold744G00270 [Cucumis melo var. makuwa]6.3e-0944.44Show/hide
Query:  KKSARKPRPVVEENENLLQPCQQVALEEFFPKYFRHHKQKKFMKLSRVMLHMWRTNDGFDPKAYTLLAKAGYDFTTHTKFKSLRIFDDKR
        KK  +   P VE  + L     +V  E F     +  KQ+  + L++  L   RT DGFDPKAY L+AKAGYDFTTHT+FKSL+I +  +
Subjt:  KKSARKPRPVVEENENLLQPCQQVALEEFFPKYFRHHKQKKFMKLSRVMLHMWRTNDGFDPKAYTLLAKAGYDFTTHTKFKSLRIFDDKR

KAA0041946.1 uncharacterized protein E6C27_scaffold67G003680 [Cucumis melo var. makuwa]1.8e-0847.56Show/hide
Query:  PVVEENENLLQPCQQVALEEFFPKYFRHHKQKKFMKLSRVMLHMWRTNDGFDPKAYTLLAKAGYDFTTHTKFKSLRIFDDKR
        P VE  + L     +V  E F     +  KQ+  + L +  L   RT DGFDPKAY L+AKAGYDFTTHTKFKSL+I +  +
Subjt:  PVVEENENLLQPCQQVALEEFFPKYFRHHKQKKFMKLSRVMLHMWRTNDGFDPKAYTLLAKAGYDFTTHTKFKSLRIFDDKR

KAA0051585.1 uncharacterized protein E6C27_scaffold174G001280 [Cucumis melo var. makuwa]1.8e-0839.09Show/hide
Query:  SLQVMEKK--DEPLLQKKNVKKSARKPRPVVEENENLLQPCQQVALEEFFPKYFRHHKQKKFMKLSRVMLHMWRTNDGFDPKAYTLLAKAGYDFTTHTKF
        S+ +M++K  + P+L+   + +  +   P VE  + L     +V  E F     +  KQ+  + L+   L   RT DGFDPKAY L+AKAGYDFTTHT+F
Subjt:  SLQVMEKK--DEPLLQKKNVKKSARKPRPVVEENENLLQPCQQVALEEFFPKYFRHHKQKKFMKLSRVMLHMWRTNDGFDPKAYTLLAKAGYDFTTHTKF

Query:  KSLRIFDDKR
        KSL+I++  +
Subjt:  KSLRIFDDKR

KAA0051955.1 uncharacterized protein E6C27_scaffold60G004340 [Cucumis melo var. makuwa]9.1e-0837.17Show/hide
Query:  IRLSLQVMEKK--DEPLLQKKNVKKSARKPRPVVEENENLLQPCQQVALEEFFPKYFRHHKQKKFMKLSRVMLHMWRTNDGFDPKAYTLLAKAGYDFTTH
        ++ S+ +M++K  + P+L+   + +S +   P VE  + L     +V  E F     +  KQK  + L+   L   RT D FDPKAY L+AK GYDFTTH
Subjt:  IRLSLQVMEKK--DEPLLQKKNVKKSARKPRPVVEENENLLQPCQQVALEEFFPKYFRHHKQKKFMKLSRVMLHMWRTNDGFDPKAYTLLAKAGYDFTTH

Query:  TKFKSLRIFDDKR
         +FKSL+I++  +
Subjt:  TKFKSLRIFDDKR

KAA0065805.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.1e-0841.84Show/hide
Query:  PLLQKKNVKKSARKPRPVVEENENLLQPCQQVALEEFFPKYFRHHKQKKFMKLSRVMLHMWRTNDGFDPKAYTLLAKAGYDFTTHTKFKSLRIFDDKR
        PL+ +K +    +   P VE  + L     +V  E F     +  KQ+  + L+   L   RT DGFDPKAY L+AKAGYDFTTHT+FKSL+I +  +
Subjt:  PLLQKKNVKKSARKPRPVVEENENLLQPCQQVALEEFFPKYFRHHKQKKFMKLSRVMLHMWRTNDGFDPKAYTLLAKAGYDFTTHTKFKSLRIFDDKR

TrEMBL top hitse value%identityAlignment
A0A5A7UD46 Uncharacterized protein8.9e-0939.09Show/hide
Query:  SLQVMEKK--DEPLLQKKNVKKSARKPRPVVEENENLLQPCQQVALEEFFPKYFRHHKQKKFMKLSRVMLHMWRTNDGFDPKAYTLLAKAGYDFTTHTKF
        S+ +M++K  + P+L+   + +  +   P VE  + L     +V  E F     +  KQ+  + L+   L   RT DGFDPKAY L+AKAGYDFTTHT+F
Subjt:  SLQVMEKK--DEPLLQKKNVKKSARKPRPVVEENENLLQPCQQVALEEFFPKYFRHHKQKKFMKLSRVMLHMWRTNDGFDPKAYTLLAKAGYDFTTHTKF

Query:  KSLRIFDDKR
        KSL+I++  +
Subjt:  KSLRIFDDKR

A0A5A7UE22 Uncharacterized protein4.4e-0837.17Show/hide
Query:  IRLSLQVMEKK--DEPLLQKKNVKKSARKPRPVVEENENLLQPCQQVALEEFFPKYFRHHKQKKFMKLSRVMLHMWRTNDGFDPKAYTLLAKAGYDFTTH
        ++ S+ +M++K  + P+L+   + +S +   P VE  + L     +V  E F     +  KQK  + L+   L   RT D FDPKAY L+AK GYDFTTH
Subjt:  IRLSLQVMEKK--DEPLLQKKNVKKSARKPRPVVEENENLLQPCQQVALEEFFPKYFRHHKQKKFMKLSRVMLHMWRTNDGFDPKAYTLLAKAGYDFTTH

Query:  TKFKSLRIFDDKR
         +FKSL+I++  +
Subjt:  TKFKSLRIFDDKR

A0A5D3BC47 Ty3-gypsy retrotransposon protein5.2e-0941.84Show/hide
Query:  PLLQKKNVKKSARKPRPVVEENENLLQPCQQVALEEFFPKYFRHHKQKKFMKLSRVMLHMWRTNDGFDPKAYTLLAKAGYDFTTHTKFKSLRIFDDKR
        PL+ +K +    +   P VE  + L     +V  E F     +  KQ+  + L+   L   RT DGFDPKAY L+AKAGYDFTTHT+FKSL+I +  +
Subjt:  PLLQKKNVKKSARKPRPVVEENENLLQPCQQVALEEFFPKYFRHHKQKKFMKLSRVMLHMWRTNDGFDPKAYTLLAKAGYDFTTHTKFKSLRIFDDKR

A0A5D3BSG5 Uncharacterized protein3.0e-0944.44Show/hide
Query:  KKSARKPRPVVEENENLLQPCQQVALEEFFPKYFRHHKQKKFMKLSRVMLHMWRTNDGFDPKAYTLLAKAGYDFTTHTKFKSLRIFDDKR
        KK  +   P VE  + L     +V  E F     +  KQ+  + L++  L   RT DGFDPKAY L+AKAGYDFTTHT+FKSL+I +  +
Subjt:  KKSARKPRPVVEENENLLQPCQQVALEEFFPKYFRHHKQKKFMKLSRVMLHMWRTNDGFDPKAYTLLAKAGYDFTTHTKFKSLRIFDDKR

A0A5D3D0V9 Uncharacterized protein8.9e-0947.56Show/hide
Query:  PVVEENENLLQPCQQVALEEFFPKYFRHHKQKKFMKLSRVMLHMWRTNDGFDPKAYTLLAKAGYDFTTHTKFKSLRIFDDKR
        P VE  + L     +V  E F     +  KQ+  + L +  L   RT DGFDPKAY L+AKAGYDFTTHTKFKSL+I +  +
Subjt:  PVVEENENLLQPCQQVALEEFFPKYFRHHKQKKFMKLSRVMLHMWRTNDGFDPKAYTLLAKAGYDFTTHTKFKSLRIFDDKR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGAGATGTGTTGCAAGAGACTTTTGGATATTTAGATGAGAATGTATCTCATGAGTTTGGTGGCAACACGAGATGGCGGGAAGAGCTCCTCGAGATAAGGCTGAGCTT
ACAGGTGATGGAGAAGAAGGATGAACCCTTGCTTCAAAAGAAGAATGTAAAGAAAAGTGCGAGAAAACCAAGGCCTGTTGTGGAAGAGAATGAAAATCTTCTCCAACCTT
GCCAGCAGGTGGCACTAGAGGAATTCTTCCCGAAGTACTTCCGCCATCACAAGCAGAAGAAGTTCATGAAATTGTCACGTGTCATGCTACACATGTGGCGAACAAATGAT
GGCTTCGATCCTAAAGCATACACGCTTCTAGCAAAAGCAGGCTATGACTTCACAACTCACACTAAGTTCAAAAGCCTAAGAATTTTCGATGACAAGCGGGAACTTTCCGC
AGTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGCGAGATGTGTTGCAAGAGACTTTTGGATATTTAGATGAGAATGTATCTCATGAGTTTGGTGGCAACACGAGATGGCGGGAAGAGCTCCTCGAGATAAGGCTGAGCTT
ACAGGTGATGGAGAAGAAGGATGAACCCTTGCTTCAAAAGAAGAATGTAAAGAAAAGTGCGAGAAAACCAAGGCCTGTTGTGGAAGAGAATGAAAATCTTCTCCAACCTT
GCCAGCAGGTGGCACTAGAGGAATTCTTCCCGAAGTACTTCCGCCATCACAAGCAGAAGAAGTTCATGAAATTGTCACGTGTCATGCTACACATGTGGCGAACAAATGAT
GGCTTCGATCCTAAAGCATACACGCTTCTAGCAAAAGCAGGCTATGACTTCACAACTCACACTAAGTTCAAAAGCCTAAGAATTTTCGATGACAAGCGGGAACTTTCCGC
AGTGTAG
Protein sequenceShow/hide protein sequence
MRDVLQETFGYLDENVSHEFGGNTRWREELLEIRLSLQVMEKKDEPLLQKKNVKKSARKPRPVVEENENLLQPCQQVALEEFFPKYFRHHKQKKFMKLSRVMLHMWRTND
GFDPKAYTLLAKAGYDFTTHTKFKSLRIFDDKRELSAV