; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc04g12290 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc04g12290
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr4:9307903..9315565
RNA-Seq ExpressionMoc04g12290
SyntenyMoc04g12290
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022137317.1 uncharacterized protein LOC111008813 [Momordica charantia]5.8e-1532.73Show/hide
Query:  VEIYVKALKKKYESKFDRDLNKGDLGEYLFVQDVLNAPILIKFETLPSKP-----------------------------------MMGQLIRWITSNLPP
        ++  V+ALK K E K +  LN GDLGE  F  DVL API  KF+    KP                                   + G    W    LP 
Subjt:  VEIYVKALKKKYESKFDRDLNKGDLGEYLFVQDVLNAPILIKFETLPSKP-----------------------------------MMGQLIRWITSNLPP

Query:  RSILTYNKLRKIFITHFSSQHHAKGLATNLLTIKQWDNETLKKFV------------------------GLKDLTLTYNLGKILALSFNEVFNKDRKVFN
         SI TY++LR+ F+  FSS+H+ K  AT+L TI+Q + ETL+++V                        GL D  LT  LG+    +F EV  K +    
Subjt:  RSILTYNKLRKIFITHFSSQHHAKGLATNLLTIKQWDNETLKKFV------------------------GLKDLTLTYNLGKILALSFNEVFNKDRKVFN

Query:  KDIKVIVGQNLLRLK----DSKLARSKK----STTPSKSKEKSNASSSLQARSDQRRFESKTSRGWPYEKYMPTT
           KVI GQ LLR K    + K+ R +          KSK+K + SS    R++ RR E+  +R  PYE++ PTT
Subjt:  KDIKVIVGQNLLRLK----DSKLARSKK----STTPSKSKEKSNASSSLQARSDQRRFESKTSRGWPYEKYMPTT

XP_022141796.1 uncharacterized protein LOC111012081 [Momordica charantia]2.6e-1533.33Show/hide
Query:  KALKKKYESKFDRDLNKGDLGEYLFVQDVLNAPILIKFETLPSKP-----------------------------------MMGQLIRWITSNLPPRSILT
        +ALK K E K +  LN GDLGE  F  DVL API  KF+    KP                                   + G    W    LP RSI T
Subjt:  KALKKKYESKFDRDLNKGDLGEYLFVQDVLNAPILIKFETLPSKP-----------------------------------MMGQLIRWITSNLPPRSILT

Query:  YNKLRKIFITHFSSQHHAKGLATNLLTIKQWDNETLKKFV------------------------GLKDLTLTYNLGKILALSFNEVFNKDRKVFNKDIKV
        Y++LR+ F+  FSS+H+ K  AT+L TI+Q + ETL+++V                        GL D  LT  LG+    +F EV  K +       KV
Subjt:  YNKLRKIFITHFSSQHHAKGLATNLLTIKQWDNETLKKFV------------------------GLKDLTLTYNLGKILALSFNEVFNKDRKVFNKDIKV

Query:  IVGQNLLRLK----DSKLARSKK----STTPSKSKEKSNASSSLQARSDQRRFESKTSRGWPYEKYMPTT
        I G  LLR K    + K++R +       T  KSK+K + SS    R + RR E+  +R  PYE++ PTT
Subjt:  IVGQNLLRLK----DSKLARSKK----STTPSKSKEKSNASSSLQARSDQRRFESKTSRGWPYEKYMPTT

XP_022152033.1 uncharacterized protein LOC111019842 [Momordica charantia]9.9e-1532.85Show/hide
Query:  VEIYVKALKKKYESKFDRDLNKGDLGEYLFVQDVLNAPILIKFETLPSKPMMG----------------------------------QLIRWITSNLPPR
        ++  V+ALK K E K +  LN GDLGE  F  DVL API  KF+    KP  G                                     R     LP R
Subjt:  VEIYVKALKKKYESKFDRDLNKGDLGEYLFVQDVLNAPILIKFETLPSKPMMG----------------------------------QLIRWITSNLPPR

Query:  SILTYNKLRKIFITHFSSQHHAKGLATNLLTIKQWDNETLKKFV------------------------GLKDLTLTYNLGKILALSFNEVFNKDRKVFNK
        SI TY++LR+ F+  FSS+H+ K  AT+L TI+Q + ETL+++V                        GL D   T  LG+    +F EV  K +     
Subjt:  SILTYNKLRKIFITHFSSQHHAKGLATNLLTIKQWDNETLKKFV------------------------GLKDLTLTYNLGKILALSFNEVFNKDRKVFNK

Query:  DIKVIVGQNLLRLK----DSKLARSKK----STTPSKSKEKSNASSSLQARSDQRRFESKTSRGWPYEKYMPTT
          KVI GQ LLR K    + K+ R +          KSK+K + SS    R+  RR E+  +R  PYE++ PTT
Subjt:  DIKVIVGQNLLRLK----DSKLARSKK----STTPSKSKEKSNASSSLQARSDQRRFESKTSRGWPYEKYMPTT

XP_022156542.1 uncharacterized protein LOC111023421 [Momordica charantia]2.4e-1632.72Show/hide
Query:  VEIYVKALKKKYESKFDRDLNKGDLGEYLFVQDVLNAPILIKFETLPSKP-----------------------------------MMGQLIRWITSNLPP
        ++  V+ALK K E K D  LN GDLGE  F  DVL API  KF+    KP                                   + G    W    LP 
Subjt:  VEIYVKALKKKYESKFDRDLNKGDLGEYLFVQDVLNAPILIKFETLPSKP-----------------------------------MMGQLIRWITSNLPP

Query:  RSILTYNKLRKIFITHFSSQHHAKGLATNLLTIKQWDNETLKKFV------------------------GLKDLTLTYNLGKILALSFNEVFNKDRKVFN
        RSI TY++LR+ F+  FSS+H+ K  AT+L TI+Q + ETL+++V                        GL D  LT  LG+    +F EV  K +    
Subjt:  RSILTYNKLRKIFITHFSSQHHAKGLATNLLTIKQWDNETLKKFV------------------------GLKDLTLTYNLGKILALSFNEVFNKDRKVFN

Query:  KDIKVIVGQNLLRLK----DSKLARSKKSTTPSKSKEKSNASSSLQA-RSDQRRFESKTSRGWPYEKYMPTT
           KVI GQ LLR K    + K+ R +      ++  KS    S  + R++ RR E+  +R  PYE++ PTT
Subjt:  KDIKVIVGQNLLRLK----DSKLARSKKSTTPSKSKEKSNASSSLQA-RSDQRRFESKTSRGWPYEKYMPTT

XP_022158303.1 uncharacterized protein LOC111024817 [Momordica charantia]2.9e-1435.19Show/hide
Query:  VKALKKKYESKFDRDLNKGDLGEYLFVQDVLNAPILIKFETLPSKP------------------MMGQLIRWITSNLPPRSILTYNKLRKIFITHFSSQH
        V+ALK + E K +   + GDLGE  F  D++ API  KF+T   KP                    G    W    LP RSI TY++LRK FI+ FSS+H
Subjt:  VKALKKKYESKFDRDLNKGDLGEYLFVQDVLNAPILIKFETLPSKP------------------MMGQLIRWITSNLPPRSILTYNKLRKIFITHFSSQH

Query:  HAKGLATNLLTIKQWDNETLKKFV------------------------GLKDLTLTYNLGKILALSFNEVFNKDRKVFNKDIKVIVGQNLLRLKDS----
        + +  AT+L TI+Q + ETL+++V                        GL D TLT  LG+    +F EV  K +       KVI GQ LLR K S    
Subjt:  HAKGLATNLLTIKQWDNETLKKFV------------------------GLKDLTLTYNLGKILALSFNEVFNKDRKVFNKDIKVIVGQNLLRLKDS----

Query:  -----KLARSKKST-TPSKSKEKSNASSSLQAR
             KL++ K+ T   SK K  S++SS ++ R
Subjt:  -----KLARSKKST-TPSKSKEKSNASSSLQAR

TrEMBL top hitse value%identityAlignment
A0A6J1C7X5 uncharacterized protein LOC1110088132.8e-1532.73Show/hide
Query:  VEIYVKALKKKYESKFDRDLNKGDLGEYLFVQDVLNAPILIKFETLPSKP-----------------------------------MMGQLIRWITSNLPP
        ++  V+ALK K E K +  LN GDLGE  F  DVL API  KF+    KP                                   + G    W    LP 
Subjt:  VEIYVKALKKKYESKFDRDLNKGDLGEYLFVQDVLNAPILIKFETLPSKP-----------------------------------MMGQLIRWITSNLPP

Query:  RSILTYNKLRKIFITHFSSQHHAKGLATNLLTIKQWDNETLKKFV------------------------GLKDLTLTYNLGKILALSFNEVFNKDRKVFN
         SI TY++LR+ F+  FSS+H+ K  AT+L TI+Q + ETL+++V                        GL D  LT  LG+    +F EV  K +    
Subjt:  RSILTYNKLRKIFITHFSSQHHAKGLATNLLTIKQWDNETLKKFV------------------------GLKDLTLTYNLGKILALSFNEVFNKDRKVFN

Query:  KDIKVIVGQNLLRLK----DSKLARSKK----STTPSKSKEKSNASSSLQARSDQRRFESKTSRGWPYEKYMPTT
           KVI GQ LLR K    + K+ R +          KSK+K + SS    R++ RR E+  +R  PYE++ PTT
Subjt:  KDIKVIVGQNLLRLK----DSKLARSKK----STTPSKSKEKSNASSSLQARSDQRRFESKTSRGWPYEKYMPTT

A0A6J1CKB3 uncharacterized protein LOC1110120811.3e-1533.33Show/hide
Query:  KALKKKYESKFDRDLNKGDLGEYLFVQDVLNAPILIKFETLPSKP-----------------------------------MMGQLIRWITSNLPPRSILT
        +ALK K E K +  LN GDLGE  F  DVL API  KF+    KP                                   + G    W    LP RSI T
Subjt:  KALKKKYESKFDRDLNKGDLGEYLFVQDVLNAPILIKFETLPSKP-----------------------------------MMGQLIRWITSNLPPRSILT

Query:  YNKLRKIFITHFSSQHHAKGLATNLLTIKQWDNETLKKFV------------------------GLKDLTLTYNLGKILALSFNEVFNKDRKVFNKDIKV
        Y++LR+ F+  FSS+H+ K  AT+L TI+Q + ETL+++V                        GL D  LT  LG+    +F EV  K +       KV
Subjt:  YNKLRKIFITHFSSQHHAKGLATNLLTIKQWDNETLKKFV------------------------GLKDLTLTYNLGKILALSFNEVFNKDRKVFNKDIKV

Query:  IVGQNLLRLK----DSKLARSKK----STTPSKSKEKSNASSSLQARSDQRRFESKTSRGWPYEKYMPTT
        I G  LLR K    + K++R +       T  KSK+K + SS    R + RR E+  +R  PYE++ PTT
Subjt:  IVGQNLLRLK----DSKLARSKK----STTPSKSKEKSNASSSLQARSDQRRFESKTSRGWPYEKYMPTT

A0A6J1DDS5 uncharacterized protein LOC1110198424.8e-1532.85Show/hide
Query:  VEIYVKALKKKYESKFDRDLNKGDLGEYLFVQDVLNAPILIKFETLPSKPMMG----------------------------------QLIRWITSNLPPR
        ++  V+ALK K E K +  LN GDLGE  F  DVL API  KF+    KP  G                                     R     LP R
Subjt:  VEIYVKALKKKYESKFDRDLNKGDLGEYLFVQDVLNAPILIKFETLPSKPMMG----------------------------------QLIRWITSNLPPR

Query:  SILTYNKLRKIFITHFSSQHHAKGLATNLLTIKQWDNETLKKFV------------------------GLKDLTLTYNLGKILALSFNEVFNKDRKVFNK
        SI TY++LR+ F+  FSS+H+ K  AT+L TI+Q + ETL+++V                        GL D   T  LG+    +F EV  K +     
Subjt:  SILTYNKLRKIFITHFSSQHHAKGLATNLLTIKQWDNETLKKFV------------------------GLKDLTLTYNLGKILALSFNEVFNKDRKVFNK

Query:  DIKVIVGQNLLRLK----DSKLARSKK----STTPSKSKEKSNASSSLQARSDQRRFESKTSRGWPYEKYMPTT
          KVI GQ LLR K    + K+ R +          KSK+K + SS    R+  RR E+  +R  PYE++ PTT
Subjt:  DIKVIVGQNLLRLK----DSKLARSKK----STTPSKSKEKSNASSSLQARSDQRRFESKTSRGWPYEKYMPTT

A0A6J1DS95 uncharacterized protein LOC1110234211.1e-1632.72Show/hide
Query:  VEIYVKALKKKYESKFDRDLNKGDLGEYLFVQDVLNAPILIKFETLPSKP-----------------------------------MMGQLIRWITSNLPP
        ++  V+ALK K E K D  LN GDLGE  F  DVL API  KF+    KP                                   + G    W    LP 
Subjt:  VEIYVKALKKKYESKFDRDLNKGDLGEYLFVQDVLNAPILIKFETLPSKP-----------------------------------MMGQLIRWITSNLPP

Query:  RSILTYNKLRKIFITHFSSQHHAKGLATNLLTIKQWDNETLKKFV------------------------GLKDLTLTYNLGKILALSFNEVFNKDRKVFN
        RSI TY++LR+ F+  FSS+H+ K  AT+L TI+Q + ETL+++V                        GL D  LT  LG+    +F EV  K +    
Subjt:  RSILTYNKLRKIFITHFSSQHHAKGLATNLLTIKQWDNETLKKFV------------------------GLKDLTLTYNLGKILALSFNEVFNKDRKVFN

Query:  KDIKVIVGQNLLRLK----DSKLARSKKSTTPSKSKEKSNASSSLQA-RSDQRRFESKTSRGWPYEKYMPTT
           KVI GQ LLR K    + K+ R +      ++  KS    S  + R++ RR E+  +R  PYE++ PTT
Subjt:  KDIKVIVGQNLLRLK----DSKLARSKKSTTPSKSKEKSNASSSLQA-RSDQRRFESKTSRGWPYEKYMPTT

A0A6J1DVQ3 uncharacterized protein LOC1110248171.4e-1435.19Show/hide
Query:  VKALKKKYESKFDRDLNKGDLGEYLFVQDVLNAPILIKFETLPSKP------------------MMGQLIRWITSNLPPRSILTYNKLRKIFITHFSSQH
        V+ALK + E K +   + GDLGE  F  D++ API  KF+T   KP                    G    W    LP RSI TY++LRK FI+ FSS+H
Subjt:  VKALKKKYESKFDRDLNKGDLGEYLFVQDVLNAPILIKFETLPSKP------------------MMGQLIRWITSNLPPRSILTYNKLRKIFITHFSSQH

Query:  HAKGLATNLLTIKQWDNETLKKFV------------------------GLKDLTLTYNLGKILALSFNEVFNKDRKVFNKDIKVIVGQNLLRLKDS----
        + +  AT+L TI+Q + ETL+++V                        GL D TLT  LG+    +F EV  K +       KVI GQ LLR K S    
Subjt:  HAKGLATNLLTIKQWDNETLKKFV------------------------GLKDLTLTYNLGKILALSFNEVFNKDRKVFNKDIKVIVGQNLLRLKDS----

Query:  -----KLARSKKST-TPSKSKEKSNASSSLQAR
             KL++ K+ T   SK K  S++SS ++ R
Subjt:  -----KLARSKKST-TPSKSKEKSNASSSLQAR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGGGACCCTATAAAATTACTGTCAACCCAACCGCCAAGAATGGGGATCAGTCGCGCAGATCTGCCAGGACAAATCTTTCACCCGTTCCAATTCGCCAGCCTACTTG
TTCCAGCCGTGGTAGAGAAAGGGTACTAAAAAGATTGGTTGGAAAACTAGCTACATGGTGCATCCCGATGTGCTTATCAATATGTAGGTTGAGCTGGACGAGATTCAAGT
TAGAATGCAAGCTATGGAGCAGTCATATCTTAACCTCTGACATAGTGAGAAGTCAGTGCCTTCCGACTTCCATGGTCGGTGAACAAGGAACAATGGAGATTCCACCCTCG
CTGAACAAGAAGTCAATGATGAAGATAATTATGTTCGCCAAAAGGAAGACATTGCAAACAACTCTCACCTTTAGGGTTGCCAAGATTCCCATGTTCGCCCAAGGCATGAT
GGCAATGTACGTCGAGAACGTAGAGATCTATGTCAAAGCTTTGAAGAAGAAATACGAGAGCAAGTTTGACCGAGATCTCAATAAAGGTGACCTTGGAGAATATTTGTTCG
TTCAAGACGTCCTTAATGCTCCTATATTGATCAAGTTCGAGACTCTACCCTCAAAGCCTATGATGGGTCAACTGATCCGATGGATTACATCGAACTTACCTCCAAGGTCG
ATCTTGACGTACAACAAGTTGAGGAAGATATTCATTACTCATTTCTCCTCGCAGCATCATGCCAAAGGGCTAGCAACTAATCTTCTAACTATTAAGCAGTGGGATAATGA
GACATTGAAGAAATTCGTTGGGCTCAAGGATCTGACTTTAACCTATAACTTAGGTAAAATACTAGCTCTTTCCTTCAACGAGGTCTTTAATAAGGACAGAAAGGTCTTTA
ACAAGGACATAAAGGTCATTGTTGGGCAAAATCTGCTCAGGTTAAAGGATTCCAAGTTAGCTCGTTCCAAGAAATCAACAACACCCTCCAAGTCTAAAGAAAAGAGCAAT
GCGTCGTCTTCCCTGCAAGCTCGTTCTGACCAGAGACGCTTTGAGTCTAAGACCAGCCGAGGATGGCCTTATGAGAAATATATGCCTACAACTAGATCATGCAATGACAC
GTCTGACTGCATTAACTTGAGCGTTAGATTGAAGACCTTATCCATGATGGATAATTCAAAAAGTTTGTGGGCAAAGGCAGCTTGGACCCTTCCGAAAAGCCTAAGGATAA
CCGCAAGCTCTTCAGAACACTTCCATGACATAAATTCTGGACTTATTTCTTCTATTTTTGGGTTGTTTGTGCAAAATTTGGAAGCATTAGTTGCACAAGAGCCAGAGGAA
AATGCTAGGATTTTTAAAGCTAGGATGCCCAATGTTGGAGCATCGCTTGTCACAGAAATTCCTGCGCAACGCAGAGTATCAAGTTCAAAATATTCGTATGGAGAAAAACC
TAAGTTAACCAAAGCTCTTCTTGCTCAGTTTGAAGAATACCTTATTAAGCAGACATCCTTTCGGCATATATCTCGGTCGGAAAATTCCAATGTAGATGCCTTGGCCAAAT
TGGCATCATCTTATGACACTTACCTTGTGAGGTCGATTCTCGTCGAGATTCTTCATGCATCGCCCATCCTGGAGCCTGATCTTATGGATATTAAAGCTCAACCAACATAC
TGGATGGATCCAATTAAGGAGCTCAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGCAGGGACCCTATAAAATTACTGTCAACCCAACCGCCAAGAATGGGGATCAGTCGCGCAGATCTGCCAGGACAAATCTTTCACCCGTTCCAATTCGCCAGCCTACTTG
TTCCAGCCGTGGTAGAGAAAGGGTACTAAAAAGATTGGTTGGAAAACTAGCTACATGGTGCATCCCGATGTGCTTATCAATATGTAGGTTGAGCTGGACGAGATTCAAGT
TAGAATGCAAGCTATGGAGCAGTCATATCTTAACCTCTGACATAGTGAGAAGTCAGTGCCTTCCGACTTCCATGGTCGGTGAACAAGGAACAATGGAGATTCCACCCTCG
CTGAACAAGAAGTCAATGATGAAGATAATTATGTTCGCCAAAAGGAAGACATTGCAAACAACTCTCACCTTTAGGGTTGCCAAGATTCCCATGTTCGCCCAAGGCATGAT
GGCAATGTACGTCGAGAACGTAGAGATCTATGTCAAAGCTTTGAAGAAGAAATACGAGAGCAAGTTTGACCGAGATCTCAATAAAGGTGACCTTGGAGAATATTTGTTCG
TTCAAGACGTCCTTAATGCTCCTATATTGATCAAGTTCGAGACTCTACCCTCAAAGCCTATGATGGGTCAACTGATCCGATGGATTACATCGAACTTACCTCCAAGGTCG
ATCTTGACGTACAACAAGTTGAGGAAGATATTCATTACTCATTTCTCCTCGCAGCATCATGCCAAAGGGCTAGCAACTAATCTTCTAACTATTAAGCAGTGGGATAATGA
GACATTGAAGAAATTCGTTGGGCTCAAGGATCTGACTTTAACCTATAACTTAGGTAAAATACTAGCTCTTTCCTTCAACGAGGTCTTTAATAAGGACAGAAAGGTCTTTA
ACAAGGACATAAAGGTCATTGTTGGGCAAAATCTGCTCAGGTTAAAGGATTCCAAGTTAGCTCGTTCCAAGAAATCAACAACACCCTCCAAGTCTAAAGAAAAGAGCAAT
GCGTCGTCTTCCCTGCAAGCTCGTTCTGACCAGAGACGCTTTGAGTCTAAGACCAGCCGAGGATGGCCTTATGAGAAATATATGCCTACAACTAGATCATGCAATGACAC
GTCTGACTGCATTAACTTGAGCGTTAGATTGAAGACCTTATCCATGATGGATAATTCAAAAAGTTTGTGGGCAAAGGCAGCTTGGACCCTTCCGAAAAGCCTAAGGATAA
CCGCAAGCTCTTCAGAACACTTCCATGACATAAATTCTGGACTTATTTCTTCTATTTTTGGGTTGTTTGTGCAAAATTTGGAAGCATTAGTTGCACAAGAGCCAGAGGAA
AATGCTAGGATTTTTAAAGCTAGGATGCCCAATGTTGGAGCATCGCTTGTCACAGAAATTCCTGCGCAACGCAGAGTATCAAGTTCAAAATATTCGTATGGAGAAAAACC
TAAGTTAACCAAAGCTCTTCTTGCTCAGTTTGAAGAATACCTTATTAAGCAGACATCCTTTCGGCATATATCTCGGTCGGAAAATTCCAATGTAGATGCCTTGGCCAAAT
TGGCATCATCTTATGACACTTACCTTGTGAGGTCGATTCTCGTCGAGATTCTTCATGCATCGCCCATCCTGGAGCCTGATCTTATGGATATTAAAGCTCAACCAACATAC
TGGATGGATCCAATTAAGGAGCTCAATTAA
Protein sequenceShow/hide protein sequence
MQGPYKITVNPTAKNGDQSRRSARTNLSPVPIRQPTCSSRGRERVLKRLVGKLATWCIPMCLSICRLSWTRFKLECKLWSSHILTSDIVRSQCLPTSMVGEQGTMEIPPS
LNKKSMMKIIMFAKRKTLQTTLTFRVAKIPMFAQGMMAMYVENVEIYVKALKKKYESKFDRDLNKGDLGEYLFVQDVLNAPILIKFETLPSKPMMGQLIRWITSNLPPRS
ILTYNKLRKIFITHFSSQHHAKGLATNLLTIKQWDNETLKKFVGLKDLTLTYNLGKILALSFNEVFNKDRKVFNKDIKVIVGQNLLRLKDSKLARSKKSTTPSKSKEKSN
ASSSLQARSDQRRFESKTSRGWPYEKYMPTTRSCNDTSDCINLSVRLKTLSMMDNSKSLWAKAAWTLPKSLRITASSSEHFHDINSGLISSIFGLFVQNLEALVAQEPEE
NARIFKARMPNVGASLVTEIPAQRRVSSSKYSYGEKPKLTKALLAQFEEYLIKQTSFRHISRSENSNVDALAKLASSYDTYLVRSILVEILHASPILEPDLMDIKAQPTY
WMDPIKELN