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Moc04g12710 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc04g12710
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr4:9800759..9801913
RNA-Seq ExpressionMoc04g12710
SyntenyMoc04g12710
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022137317.1 uncharacterized protein LOC111008813 [Momordica charantia]5.6e-1433.95Show/hide
Query:  GEREDPPFTAPIMAHPLPPKMKIPDIKSYDGSADRIDHIELYERLMELNAASDEIK-----------------------------KVLKFYQPITVQHDR
        G+  + PFT+ ++  P+PPK K P +K YDGS D  D++E++E LM+  AASD IK                                +F    + +H  
Subjt:  GEREDPPFTAPIMAHPLPPKMKIPDIKSYDGSADRIDHIELYERLMELNAASDEIK-----------------------------KVLKFYQPITVQHDR

Query:  NKPDMPMLTIRQEEGESLLEFVGRFMAEKIKMSDCSDDVARTTFMSTINGSADPIDHIELYE
         K    + TIRQ+EGE+L E+V RF  E++K++ CSDD A   F++   G AD    ++L E
Subjt:  NKPDMPMLTIRQEEGESLLEFVGRFMAEKIKMSDCSDDVARTTFMSTINGSADPIDHIELYE

XP_022151609.1 uncharacterized protein LOC111019523 [Momordica charantia]1.6e-2452.55Show/hide
Query:  MAHPLPPKMKIPDIKSYDGSADRIDHIELYERLMELNAASDEIK----------------KVLK-------------FYQPITVQHDRNKPDMPMLTIRQ
        MA+PLPPKMK PD+K YD  A+ IDHIELYE LMEL+A  D++K                + LK             F    + QHDR K D  +LTI Q
Subjt:  MAHPLPPKMKIPDIKSYDGSADRIDHIELYERLMELNAASDEIK----------------KVLK-------------FYQPITVQHDRNKPDMPMLTIRQ

Query:  EEGESLLEFVGRFMAEKIKMSDCSDDVARTTFMSTIN
        EEGESL EFVGRF+ EKIK+ DCS+DVAR TFMS IN
Subjt:  EEGESLLEFVGRFMAEKIKMSDCSDDVARTTFMSTIN

XP_022156542.1 uncharacterized protein LOC111023421 [Momordica charantia]1.6e-1333.33Show/hide
Query:  GEREDPPFTAPIMAHPLPPKMKIPDIKSYDGSADRIDHIELYERLMELNAASDEIK-----------------------------KVLKFYQPITVQHDR
        G+  + PFT+ ++  P+PPK K P +K YDG+ D  D++E++E LM+  AASD IK                                +F    + +H  
Subjt:  GEREDPPFTAPIMAHPLPPKMKIPDIKSYDGSADRIDHIELYERLMELNAASDEIK-----------------------------KVLKFYQPITVQHDR

Query:  NKPDMPMLTIRQEEGESLLEFVGRFMAEKIKMSDCSDDVARTTFMSTINGSADPIDHIELYE
         K    + TIRQ+EGE+L E+V RF  E++K++ CSDD A   F++   G AD    ++L E
Subjt:  NKPDMPMLTIRQEEGESLLEFVGRFMAEKIKMSDCSDDVARTTFMSTINGSADPIDHIELYE

XP_022159160.1 uncharacterized protein LOC111025585 [Momordica charantia]2.1e-1639.19Show/hide
Query:  EVSDMMKDVISKLQSDFDMTWVELGEREDPPFTAPIMAHPLPPKMKIPDIKSYDGSADRIDHIELYERLMELNAASDEIKKVLKFYQPITVQ-----HDR
        E  + +KD   K +S F+      GE  + PFT+ ++  P+PPK K+P +K YDGS D  D++E++E LM+  AASD I K   F   +T          
Subjt:  EVSDMMKDVISKLQSDFDMTWVELGEREDPPFTAPIMAHPLPPKMKIPDIKSYDGSADRIDHIELYERLMELNAASDEIKKVLKFYQPITVQ-----HDR

Query:  NKPDMPMLTIRQEEGESLLEFVGRFMAEKIKMSDCSDDVARTTFMSTI
         K    + TIRQ+EGE+L E+V RF  E++K++ CSDD A   F++T+
Subjt:  NKPDMPMLTIRQEEGESLLEFVGRFMAEKIKMSDCSDDVARTTFMSTI

XP_022159250.1 uncharacterized protein LOC111025663 [Momordica charantia]1.6e-1334.25Show/hide
Query:  GEREDPPFTAPIMAHPLPPKMKIPDIKSYDGSADRIDHIELYERLMELNAASDEIK-----------------------------KVLKFYQPITVQHDR
        G+  + PFT+ I+  P+PPK K P +K YDGS D  D++E++E LM+  AA+D IK                                +F    + +H  
Subjt:  GEREDPPFTAPIMAHPLPPKMKIPDIKSYDGSADRIDHIELYERLMELNAASDEIK-----------------------------KVLKFYQPITVQHDR

Query:  NKPDMPMLTIRQEEGESLLEFVGRFMAEKIKMSDCSDDVARTTFMS
         K    + TIRQ+EGE+L E+V RF+ E++K++ CSDD A   F++
Subjt:  NKPDMPMLTIRQEEGESLLEFVGRFMAEKIKMSDCSDDVARTTFMS

TrEMBL top hitse value%identityAlignment
A0A6J1C7X5 uncharacterized protein LOC1110088132.7e-1433.95Show/hide
Query:  GEREDPPFTAPIMAHPLPPKMKIPDIKSYDGSADRIDHIELYERLMELNAASDEIK-----------------------------KVLKFYQPITVQHDR
        G+  + PFT+ ++  P+PPK K P +K YDGS D  D++E++E LM+  AASD IK                                +F    + +H  
Subjt:  GEREDPPFTAPIMAHPLPPKMKIPDIKSYDGSADRIDHIELYERLMELNAASDEIK-----------------------------KVLKFYQPITVQHDR

Query:  NKPDMPMLTIRQEEGESLLEFVGRFMAEKIKMSDCSDDVARTTFMSTINGSADPIDHIELYE
         K    + TIRQ+EGE+L E+V RF  E++K++ CSDD A   F++   G AD    ++L E
Subjt:  NKPDMPMLTIRQEEGESLLEFVGRFMAEKIKMSDCSDDVARTTFMSTINGSADPIDHIELYE

A0A6J1DDJ7 uncharacterized protein LOC1110195237.6e-2552.55Show/hide
Query:  MAHPLPPKMKIPDIKSYDGSADRIDHIELYERLMELNAASDEIK----------------KVLK-------------FYQPITVQHDRNKPDMPMLTIRQ
        MA+PLPPKMK PD+K YD  A+ IDHIELYE LMEL+A  D++K                + LK             F    + QHDR K D  +LTI Q
Subjt:  MAHPLPPKMKIPDIKSYDGSADRIDHIELYERLMELNAASDEIK----------------KVLK-------------FYQPITVQHDRNKPDMPMLTIRQ

Query:  EEGESLLEFVGRFMAEKIKMSDCSDDVARTTFMSTIN
        EEGESL EFVGRF+ EKIK+ DCS+DVAR TFMS IN
Subjt:  EEGESLLEFVGRFMAEKIKMSDCSDDVARTTFMSTIN

A0A6J1DS95 uncharacterized protein LOC1110234217.9e-1433.33Show/hide
Query:  GEREDPPFTAPIMAHPLPPKMKIPDIKSYDGSADRIDHIELYERLMELNAASDEIK-----------------------------KVLKFYQPITVQHDR
        G+  + PFT+ ++  P+PPK K P +K YDG+ D  D++E++E LM+  AASD IK                                +F    + +H  
Subjt:  GEREDPPFTAPIMAHPLPPKMKIPDIKSYDGSADRIDHIELYERLMELNAASDEIK-----------------------------KVLKFYQPITVQHDR

Query:  NKPDMPMLTIRQEEGESLLEFVGRFMAEKIKMSDCSDDVARTTFMSTINGSADPIDHIELYE
         K    + TIRQ+EGE+L E+V RF  E++K++ CSDD A   F++   G AD    ++L E
Subjt:  NKPDMPMLTIRQEEGESLLEFVGRFMAEKIKMSDCSDDVARTTFMSTINGSADPIDHIELYE

A0A6J1DXW4 uncharacterized protein LOC1110255851.0e-1639.19Show/hide
Query:  EVSDMMKDVISKLQSDFDMTWVELGEREDPPFTAPIMAHPLPPKMKIPDIKSYDGSADRIDHIELYERLMELNAASDEIKKVLKFYQPITVQ-----HDR
        E  + +KD   K +S F+      GE  + PFT+ ++  P+PPK K+P +K YDGS D  D++E++E LM+  AASD I K   F   +T          
Subjt:  EVSDMMKDVISKLQSDFDMTWVELGEREDPPFTAPIMAHPLPPKMKIPDIKSYDGSADRIDHIELYERLMELNAASDEIKKVLKFYQPITVQ-----HDR

Query:  NKPDMPMLTIRQEEGESLLEFVGRFMAEKIKMSDCSDDVARTTFMSTI
         K    + TIRQ+EGE+L E+V RF  E++K++ CSDD A   F++T+
Subjt:  NKPDMPMLTIRQEEGESLLEFVGRFMAEKIKMSDCSDDVARTTFMSTI

A0A6J1DY58 uncharacterized protein LOC1110256637.9e-1434.25Show/hide
Query:  GEREDPPFTAPIMAHPLPPKMKIPDIKSYDGSADRIDHIELYERLMELNAASDEIK-----------------------------KVLKFYQPITVQHDR
        G+  + PFT+ I+  P+PPK K P +K YDGS D  D++E++E LM+  AA+D IK                                +F    + +H  
Subjt:  GEREDPPFTAPIMAHPLPPKMKIPDIKSYDGSADRIDHIELYERLMELNAASDEIK-----------------------------KVLKFYQPITVQHDR

Query:  NKPDMPMLTIRQEEGESLLEFVGRFMAEKIKMSDCSDDVARTTFMS
         K    + TIRQ+EGE+L E+V RF+ E++K++ CSDD A   F++
Subjt:  NKPDMPMLTIRQEEGESLLEFVGRFMAEKIKMSDCSDDVARTTFMS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCCAGGAGCTAATTGGATTACATGCAAAGTTAAACGAAGTTCGTGCTGAATTGGGTGGCGCCGCTCATATGCGTGCGACTGCATATACTTATCAGCCTACT
GTTGATGTGCCAGAAGTTTCTGATATGATGAAAGATGTAATTAGTAAGCTACAAAGTGACTTTGATATGACTTGGGTAGAACTAGGTGAAAGAGAAGACCCACCT
TTCACAGCGCCAATAATGGCGCATCCCTTACCACCAAAAATGAAAATACCAGACATAAAGTCGTATGATGGATCAGCAGATCGAATCGACCATATTGAGTTGTAT
GAGAGGCTTATGGAGCTGAATGCCGCAAGCGATGAAATAAAGAAAGTTTTAAAATTTTACCAACCAATCACCGTACAGCACGACCGAAACAAACCCGATATGCCT
ATGTTAACTATTCGTCAAGAGGAGGGCGAGTCGCTGCTTGAGTTCGTTGGTCGTTTTATGGCAGAGAAAATAAAAATGTCGGATTGTTCAGACGACGTGGCAAGG
ACAACATTCATGTCCACCATAAATGGATCAGCAGATCCAATCGACCATATTGAGTTGTACGAGAGGCTTATGGAGCTGAATGCCGCAAGTGATGAAATGAAGTGC
CGAGCTTTCTCGATGACCCTAAAAGGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGCCAGGAGCTAATTGGATTACATGCAAAGTTAAACGAAGTTCGTGCTGAATTGGGTGGCGCCGCTCATATGCGTGCGACTGCATATACTTATCAGCCTACT
GTTGATGTGCCAGAAGTTTCTGATATGATGAAAGATGTAATTAGTAAGCTACAAAGTGACTTTGATATGACTTGGGTAGAACTAGGTGAAAGAGAAGACCCACCT
TTCACAGCGCCAATAATGGCGCATCCCTTACCACCAAAAATGAAAATACCAGACATAAAGTCGTATGATGGATCAGCAGATCGAATCGACCATATTGAGTTGTAT
GAGAGGCTTATGGAGCTGAATGCCGCAAGCGATGAAATAAAGAAAGTTTTAAAATTTTACCAACCAATCACCGTACAGCACGACCGAAACAAACCCGATATGCCT
ATGTTAACTATTCGTCAAGAGGAGGGCGAGTCGCTGCTTGAGTTCGTTGGTCGTTTTATGGCAGAGAAAATAAAAATGTCGGATTGTTCAGACGACGTGGCAAGG
ACAACATTCATGTCCACCATAAATGGATCAGCAGATCCAATCGACCATATTGAGTTGTACGAGAGGCTTATGGAGCTGAATGCCGCAAGTGATGAAATGAAGTGC
CGAGCTTTCTCGATGACCCTAAAAGGCTAA
Protein sequenceShow/hide protein sequence
MGQELIGLHAKLNEVRAELGGAAHMRATAYTYQPTVDVPEVSDMMKDVISKLQSDFDMTWVELGEREDPPFTAPIMAHPLPPKMKIPDIKSYDGSADRIDHIELY
ERLMELNAASDEIKKVLKFYQPITVQHDRNKPDMPMLTIRQEEGESLLEFVGRFMAEKIKMSDCSDDVARTTFMSTINGSADPIDHIELYERLMELNAASDEMKC
RAFSMTLKG