; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc04g13060 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc04g13060
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr4:10141132..10145007
RNA-Seq ExpressionMoc04g13060
SyntenyMoc04g13060
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR036397 - Ribonuclease H superfamily
IPR036691 - Endonuclease/exonuclease/phosphatase superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TXG63781.1 hypothetical protein EZV62_010775 [Acer yangbiense]5.8e-2329.89Show/hide
Query:  LFWNVQGLGNPRTF------------------------------RD---YFGCFAVESSGNSGGLGILWRDENHNRHATWELLRRLHNSDNSTWVVGWGG
        L WN++GLGNPR F                              RD   Y GCF V+ S NSGGL +LW+D +  R+A+W LLRRL + D   W+    G
Subjt:  LFWNVQGLGNPRTF------------------------------RD---YFGCFAVESSGNSGGLGILWRDENHNRHATWELLRRLHNSDNSTWVVGWGG

Query:  GDLNEILFLDEKVGSCAKSLPQMNSFREALDDCCLHDLGNEAFRDLWAELRVVHQD------------------------WARPPPWD------------
        GD NE++ + +KVG   K+   M  F++A+D+C L+DLG    R  W   R  H+                         W +   +             
Subjt:  GDLNEILFLDEKVGSCAKSLPQMNSFREALDDCCLHDLGNEAFRDLWAELRVVHQD------------------------WARPPPWD------------

Query:  -----------FELIGKK---------ERDLDVLLEKEKMYWKQRSRENWLKLRDMNTKWFHNRAFIRRQK
                    +L G+          E +++ +LE E++YW+QRSR  WL+  D N+ +FH RA  R++K
Subjt:  -----------FELIGKK---------ERDLDVLLEKEKMYWKQRSRENWLKLRDMNTKWFHNRAFIRRQK

XP_006487889.1 uncharacterized protein LOC102617714 [Citrus sinensis]4.0e-2428.43Show/hide
Query:  MKLLFWNVQGLGNPRTFRD---------------------------------YFGCFAVESSGNSGGLGILW----------------------------
        MK++ WNVQGLG  RTFR+                                 +  CF V+  G  GGL +LW                            
Subjt:  MKLLFWNVQGLGNPRTFRD---------------------------------YFGCFAVESSGNSGGLGILW----------------------------

Query:  -------RDENHNRHATWELLRRLHNSDNSTWVVGWGGGDLNEILFLDEKVGSCAKSLPQMNSFREALDDCCLHDLGNEAFRDLWA----ELRVVHQDWA
                 E+  +  TW LLRRL    +  W+     GD NEI  L+EKVG   ++  +++ FR+A+ DC L DLG + +   W+    E +++    A
Subjt:  -------RDENHNRHATWELLRRLHNSDNSTWVVGWGGGDLNEILFLDEKVGSCAKSLPQMNSFREALDDCCLHDLGNEAFRDLWA----ELRVVHQDWA

Query:  RPPPWDFELIGKK-----------------------------------ERDLDVLLEKEKMYWKQRSRENWLKLRDMNTKWFHNRAFIRRQKNHIRGVEI
        R    + +L  KK                                   E  +D +L+ E+++WKQRSR +WLK  D NTK+FH +A  RR+KN I G+  
Subjt:  RPPPWDFELIGKK-----------------------------------ERDLDVLLEKEKMYWKQRSRENWLKLRDMNTKWFHNRAFIRRQKNHIRGVEI

Query:  EDNSWSEDIAVVE
        E   W+ED   VE
Subjt:  EDNSWSEDIAVVE

XP_020412490.1 uncharacterized protein LOC18793550 [Prunus persica]2.7e-2026.65Show/hide
Query:  MKLLFWNVQGLGNPRTFRD---------------------------------YFGCFAVESSGNSGGLGILWRDE-------------------------
        M LL WN +GLGNPRT +D                                 +  CF V++ G SGGL + W+ E                         
Subjt:  MKLLFWNVQGLGNPRTFRD---------------------------------YFGCFAVESSGNSGGLGILWRDE-------------------------

Query:  -----------NHNRHATWELLRRLHNSDNSTWVVGWGGGDLNEILFLDEKVGSCAKSLPQMNSFREALDDCCLHDLGNEAFRDLWAELR----VVHQDW
                     + H +W LLR L +     WV     GD NE+L+ +EK G   + + QM +FR+A+ DC L D+G E     W   R        D 
Subjt:  -----------NHNRHATWELLRRLHNSDNSTWVVGWGGGDLNEILFLDEKVGSCAKSLPQMNSFREALDDCCLHDLGNEAFRDLWAELR----VVHQDW

Query:  A----------RPP-----PWDFELIGKKERD------------------------------LDVLLEKEKMYWKQRSRENWLKLRDMNTKWFHNRAFIR
        A          +PP      W   + G  + +                              LD LL +E+ +WKQRS+ +WLK  D NT++FH RA  R
Subjt:  A----------RPP-----PWDFELIGKKERD------------------------------LDVLLEKEKMYWKQRSRENWLKLRDMNTKWFHNRAFIR

Query:  RQKNHIRGVEIEDNSWSED
        +Q+N+++G+      W ED
Subjt:  RQKNHIRGVEIEDNSWSED

XP_024044510.1 uncharacterized protein LOC112100177 [Citrus clementina]1.2e-2028.29Show/hide
Query:  YFGCFAVESSGNSGGLGILWRDE------NHNRH-----------------------------ATWELLRRLHNSDNSTWVVGWGGGDLNEILFLDEKVG
        Y  CFAV   G  GGL +LW +E      ++++H                              TWELLRRL    +  W+     GD NE+L L+EK+G
Subjt:  YFGCFAVESSGNSGGLGILWRDE------NHNRH-----------------------------ATWELLRRLHNSDNSTWVVGWGGGDLNEILFLDEKVG

Query:  SCAKSLPQMNSFREALDDCCLHDLGNEAFRDLWAELR----VVHQDWAR---PPPWDFELIGKKERDLDVLLEKEKMYWKQRSRENWLKLRDMNTKWFHN
           K + ++N FR AL DC L DLG+  +   W+  R    ++ +   R      W      K   +L            + SR +WLK  D NTK+FH+
Subjt:  SCAKSLPQMNSFREALDDCCLHDLGNEAFRDLWAELR----VVHQDWAR---PPPWDFELIGKKERDLDVLLEKEKMYWKQRSRENWLKLRDMNTKWFHN

Query:  RAFIRRQKNHIRGVEIEDNSWSEDIAVVEHSNDKSSKERVRGGTFLTSLFEERRDGGSQSGKVHQSLP---------DVEYLVSEQADIVAAMVDVLPKM
        +A  RR+KN I+G+E E+  W+ED  VVE             G + T++F       +Q     +++P          ++ L +++ +I  A+  + P  
Subjt:  RAFIRRQKNHIRGVEIEDNSWSEDIAVVEHSNDKSSKERVRGGTFLTSLFEERRDGGSQSGKVHQSLP---------DVEYLVSEQADIVAAMVDVLPKM

Query:  SPQL
        +P L
Subjt:  SPQL

XP_040996136.1 uncharacterized protein LOC121242323 [Juglans microcarpa x Juglans regia]1.1e-2130.88Show/hide
Query:  MKLLFWNVQGLGNPRTF------------------------------RD---YFGCFAVESSGNSGGLGILWRDE--------NHN--------------
        MK L WN +GLGNPRT                               RD   +  CF+V+S G SGG+ I W+ E        +HN              
Subjt:  MKLLFWNVQGLGNPRTF------------------------------RD---YFGCFAVESSGNSGGLGILWRDE--------NHN--------------

Query:  --------------RHATWELLRRLHNSDNSTWVVGWGGGDLNEILFLDEKVGSCAKSLPQMNSFREALDDCCLHDLG------NEAFRDLWAELRVVHQ
                      R A+W+LLR +H+  ++ W+     GD NEI+F DE  GS      QM  FR+AL DC L D+G          +   +EL     
Subjt:  --------------RHATWELLRRLHNSDNSTWVVGWGGGDLNEILFLDEKVGSCAKSLPQMNSFREALDDCCLHDLG------NEAFRDLWAELRVVHQ

Query:  DWARPPPWDFELIGKKERDLDVLLEKEKMYWKQRSRENWLKLRDMNTKWFHNRAFIRRQKNHIRGVEIEDNS
        D A        L    + ++D  LE+E++ W+QR+++ WLK  D NTK+FH  A  R+Q N I+ ++ E+ S
Subjt:  DWARPPPWDFELIGKKERDLDVLLEKEKMYWKQRSRENWLKLRDMNTKWFHNRAFIRRQKNHIRGVEIEDNS

TrEMBL top hitse value%identityAlignment
A0A2N9F3X0 Uncharacterized protein1.5e-2134.22Show/hide
Query:  RTFRDYFGCFAVESSGNSGGLGILWRDENHNRHATWELLRRLHNSDNSTWVVGWGGGDLNEILFLDEKVGSCAKSLPQMNSFREALDDCCLHDLGNEAFR
        + F+D  GC+ +         G     E   R  TWELLRRLH  DN  W+V    GD NE + LDE+ G   +SL QM +FREAL DC L DLG +   
Subjt:  RTFRDYFGCFAVESSGNSGGLGILWRDENHNRHATWELLRRLHNSDNSTWVVGWGGGDLNEILFLDEKVGSCAKSLPQMNSFREALDDCCLHDLGNEAFR

Query:  DLWAELRV-------------VHQDWAR--------PPPWDFELIGKK------------ERDLDVLLEKEKMYWKQRSRENWLKLRDMNTKWFHNRAFI
          W+  R+                 W R           W  E +G               +++ VLL KE++ W+QRSR NWL   D NT +FH  A  
Subjt:  DLWAELRV-------------VHQDWAR--------PPPWDFELIGKK------------ERDLDVLLEKEKMYWKQRSRENWLKLRDMNTKWFHNRAFI

Query:  RRQKNHIRGVEIEDNSWSEDIAVVE
        R++ N I+G+   ++ W  D+  VE
Subjt:  RRQKNHIRGVEIEDNSWSEDIAVVE

A0A2N9FCF2 CCHC-type domain-containing protein4.6e-1825.63Show/hide
Query:  MKLLFWNVQGLGNPRTFRDYF---------------------------------GCFAVESSGNSGGLGILWRD---------ENHNRHA-TWELLRRLH
        MK+   N +GLGNP T R+                                   GCF V      GGL +LWR           NH+  A    LL+ L 
Subjt:  MKLLFWNVQGLGNPRTFRDYF---------------------------------GCFAVESSGNSGGLGILWRD---------ENHNRHA-TWELLRRLH

Query:  NSDNSTWVVGWGGGDLNEILFLDEKVGSCAKSLPQMNSFREALDDCCLHDLGNEAFRDLWAELRV------------------------VHQDWARP-PP
        +  +  W+V    GD NE+  L+E+ G    SLP M +FR+AL DC L DLG +     W+  R                         + Q   RP   
Subjt:  NSDNSTWVVGWGGGDLNEILFLDEKVGSCAKSLPQMNSFREALDDCCLHDLGNEAFRDLWAELRV------------------------VHQDWARP-PP

Query:  WDFELIGKKERDLDVLLEKEKMYWKQRSRENWLKLRDMNTKWFHNRAFIRRQKNHIRGVEIEDNSWSEDIAVVEHSNDKSSKERVRGGTFLTSLFEERRD
        +    +    R++++L+EKE+ +W+QRSR +WLK  D NTK+FH  A  R++ N I  +  E   W  + A + +              +   LF     
Subjt:  WDFELIGKKERDLDVLLEKEKMYWKQRSRENWLKLRDMNTKWFHNRAFIRRQKNHIRGVEIEDNSWSEDIAVVEHSNDKSSKERVRGGTFLTSLFEERRD

Query:  GGSQSGKVHQSLPDVEYLVSEQADIVAAMVDVLPKMSPQLVEIAAIREGLKIAVRLGLSKVIIETDSLSSI---ALIREGSLVQNEISNWLEDI
                  S PD    V +Q D +     V P+M+  L+   +  E  +   ++  SK +   DS S+     +I +  ++ +E+ ++L+++
Subjt:  GGSQSGKVHQSLPDVEYLVSEQADIVAAMVDVLPKMSPQLVEIAAIREGLKIAVRLGLSKVIIETDSLSSI---ALIREGSLVQNEISNWLEDI

A0A2N9GUR2 Uncharacterized protein1.7e-2033.96Show/hide
Query:  GCFAVESSGNSGGLGILWRD---------ENHNRHATWELLRRLHNSDNSTWVVGWGGGDLNEILFLDEKVGSCAKSLPQMNSFREALDDCCLHDLGNEA
        GCF VE  G  GGL +LW            NH+  A   LLR+LH+S +  W+V    GD NEI  LDEK G   +SL QM +F ++L +C L DLG   
Subjt:  GCFAVESSGNSGGLGILWRD---------ENHNRHATWELLRRLHNSDNSTWVVGWGGGDLNEILFLDEKVGSCAKSLPQMNSFREALDDCCLHDLGNEA

Query:  FRDLWAE------------------LRVVHQDWAR--------PPPWDFELIGKKERDLDVLLEKEKMYWKQRSRENWLKLRDMNTKWFHNRAFIRRQKN
            W+                   LR++    AR           ++   +    R+++VL+EKE+++W+QRSR +WLK  D NT+++H  A  R++ N
Subjt:  FRDLWAE------------------LRVVHQDWAR--------PPPWDFELIGKKERDLDVLLEKEKMYWKQRSRENWLKLRDMNTKWFHNRAFIRRQKN

Query:  HIRGVEIEDNSW
         I G+  +   W
Subjt:  HIRGVEIEDNSW

A0A5C7I3G0 DUF4283 domain-containing protein2.8e-2329.89Show/hide
Query:  LFWNVQGLGNPRTF------------------------------RD---YFGCFAVESSGNSGGLGILWRDENHNRHATWELLRRLHNSDNSTWVVGWGG
        L WN++GLGNPR F                              RD   Y GCF V+ S NSGGL +LW+D +  R+A+W LLRRL + D   W+    G
Subjt:  LFWNVQGLGNPRTF------------------------------RD---YFGCFAVESSGNSGGLGILWRDENHNRHATWELLRRLHNSDNSTWVVGWGG

Query:  GDLNEILFLDEKVGSCAKSLPQMNSFREALDDCCLHDLGNEAFRDLWAELRVVHQD------------------------WARPPPWD------------
        GD NE++ + +KVG   K+   M  F++A+D+C L+DLG    R  W   R  H+                         W +   +             
Subjt:  GDLNEILFLDEKVGSCAKSLPQMNSFREALDDCCLHDLGNEAFRDLWAELRVVHQD------------------------WARPPPWD------------

Query:  -----------FELIGKK---------ERDLDVLLEKEKMYWKQRSRENWLKLRDMNTKWFHNRAFIRRQK
                    +L G+          E +++ +LE E++YW+QRSR  WL+  D N+ +FH RA  R++K
Subjt:  -----------FELIGKK---------ERDLDVLLEKEKMYWKQRSRENWLKLRDMNTKWFHNRAFIRRQK

A0A803QCP7 Uncharacterized protein1.4e-1726.1Show/hide
Query:  MKLLFWNVQGLGNPRT-----FR----------------------------DYFGCFAVESSGNSGGLGILWR---------------------------
        M LL WNVQGLGNP T     FR                             + GCF VE+ G SGG+ + W                            
Subjt:  MKLLFWNVQGLGNPRT-----FR----------------------------DYFGCFAVESSGNSGGLGILWR---------------------------

Query:  ---------DENHNRHATWELLRRLHNSDNSTWVVGWGGGDLNEILFLDEKVGSCAKSLPQMNSFREALDDCCLHDLGNEAFRDLWAELR----------
                 D     H+  +LL+RL      TW V   GGD NEIL   EK+G  +KS   +N+FR+ALD C L D+G E     W   R          
Subjt:  ---------DENHNRHATWELLRRLHNSDNSTWVVGWGGGDLNEILFLDEKVGSCAKSLPQMNSFREALDDCCLHDLGNEAFRDLWAELR----------

Query:  ----------------VVHQD-----------------------------------WARPPPWDFELIGKKERDLDVLLEKEKMYWKQRSRENWLKLRDM
                        V H D                                   WA    +   +  + E   +++L KE+ +WKQRSR  WLK  D 
Subjt:  ----------------VVHQD-----------------------------------WARPPPWDFELIGKKERDLDVLLEKEKMYWKQRSRENWLKLRDM

Query:  NTKWFHNRAFIRRQKNHIRGVEIEDNSWSEDIAVVEHSNDKSSKERVRGGTFLTSLFEERRDGGSQSGKVHQSLPD----------VEYLVSEQADIVAA
        NTK FH +A  R+ KN I+G+  E  +W   + V  H    +         +  +LF   R    +  +  + +P           +E   +E  D+   
Subjt:  NTKWFHNRAFIRRQKNHIRGVEIEDNSWSEDIAVVEHSNDKSSKERVRGGTFLTSLFEERRDGGSQSGKVHQSLPD----------VEYLVSEQADIVAA

Query:  MVDVLPKMSP
        M DVLPK +P
Subjt:  MVDVLPKMSP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAATTATTATTTTGGAATGTCCAAGGTTTGGGGAACCCGAGGACATTCAGAGATTATTTTGGTTGTTTTGCGGTTGAGAGTAGTGGTAACAGTGGTGGGTTGGGCAT
TTTATGGAGGGATGAGAACCACAACAGGCATGCCACTTGGGAATTATTGAGACGTTTACATAATTCAGATAATTCGACCTGGGTTGTGGGGTGGGGGGGTGGGGATTTAA
ATGAAATTCTCTTCCTTGACGAGAAAGTGGGGAGCTGTGCTAAAAGCTTACCCCAAATGAATAGTTTCAGAGAAGCGTTAGATGATTGTTGCCTCCATGATTTGGGCAAT
GAGGCGTTTAGGGATCTTTGGGCAGAGTTAAGAGTAGTTCATCAGGATTGGGCCAGGCCTCCTCCTTGGGACTTTGAGCTTATCGGTAAAAAGGAGAGGGACCTAGATGT
TCTTCTGGAAAAGGAGAAAATGTACTGGAAGCAGAGGTCGAGAGAAAATTGGTTAAAATTAAGGGATATGAACACTAAATGGTTCCACAATAGGGCTTTCATTCGTAGAC
AGAAAAATCATATCCGTGGTGTGGAAATTGAAGATAATAGTTGGTCGGAGGACATAGCAGTGGTGGAGCATAGTAATGACAAATCTTCAAAGGAAAGGGTTAGAGGTGGT
ACCTTTTTGACCAGTTTGTTCGAAGAAAGAAGAGACGGTGGATCACAATCTGGTAAGGTGCACCAGAGCCTGCCAGATGTGGAATATCTTGTTTCCGAACAAGCTGATAT
TGTTGCTGCCATGGTTGATGTTCTTCCAAAGATGAGCCCTCAACTAGTCGAAATTGCTGCGATTAGGGAAGGTTTGAAGATTGCAGTGCGATTAGGGCTCTCGAAGGTGA
TTATCGAGACGGACTCCCTGAGCTCCATTGCTCTTATTCGCGAGGGATCCCTTGTGCAAAATGAAATTTCGAACTGGCTAGAAGATATTCGTATGCTATCATAA
mRNA sequenceShow/hide mRNA sequence
ATGAAATTATTATTTTGGAATGTCCAAGGTTTGGGGAACCCGAGGACATTCAGAGATTATTTTGGTTGTTTTGCGGTTGAGAGTAGTGGTAACAGTGGTGGGTTGGGCAT
TTTATGGAGGGATGAGAACCACAACAGGCATGCCACTTGGGAATTATTGAGACGTTTACATAATTCAGATAATTCGACCTGGGTTGTGGGGTGGGGGGGTGGGGATTTAA
ATGAAATTCTCTTCCTTGACGAGAAAGTGGGGAGCTGTGCTAAAAGCTTACCCCAAATGAATAGTTTCAGAGAAGCGTTAGATGATTGTTGCCTCCATGATTTGGGCAAT
GAGGCGTTTAGGGATCTTTGGGCAGAGTTAAGAGTAGTTCATCAGGATTGGGCCAGGCCTCCTCCTTGGGACTTTGAGCTTATCGGTAAAAAGGAGAGGGACCTAGATGT
TCTTCTGGAAAAGGAGAAAATGTACTGGAAGCAGAGGTCGAGAGAAAATTGGTTAAAATTAAGGGATATGAACACTAAATGGTTCCACAATAGGGCTTTCATTCGTAGAC
AGAAAAATCATATCCGTGGTGTGGAAATTGAAGATAATAGTTGGTCGGAGGACATAGCAGTGGTGGAGCATAGTAATGACAAATCTTCAAAGGAAAGGGTTAGAGGTGGT
ACCTTTTTGACCAGTTTGTTCGAAGAAAGAAGAGACGGTGGATCACAATCTGGTAAGGTGCACCAGAGCCTGCCAGATGTGGAATATCTTGTTTCCGAACAAGCTGATAT
TGTTGCTGCCATGGTTGATGTTCTTCCAAAGATGAGCCCTCAACTAGTCGAAATTGCTGCGATTAGGGAAGGTTTGAAGATTGCAGTGCGATTAGGGCTCTCGAAGGTGA
TTATCGAGACGGACTCCCTGAGCTCCATTGCTCTTATTCGCGAGGGATCCCTTGTGCAAAATGAAATTTCGAACTGGCTAGAAGATATTCGTATGCTATCATAA
Protein sequenceShow/hide protein sequence
MKLLFWNVQGLGNPRTFRDYFGCFAVESSGNSGGLGILWRDENHNRHATWELLRRLHNSDNSTWVVGWGGGDLNEILFLDEKVGSCAKSLPQMNSFREALDDCCLHDLGN
EAFRDLWAELRVVHQDWARPPPWDFELIGKKERDLDVLLEKEKMYWKQRSRENWLKLRDMNTKWFHNRAFIRRQKNHIRGVEIEDNSWSEDIAVVEHSNDKSSKERVRGG
TFLTSLFEERRDGGSQSGKVHQSLPDVEYLVSEQADIVAAMVDVLPKMSPQLVEIAAIREGLKIAVRLGLSKVIIETDSLSSIALIREGSLVQNEISNWLEDIRMLS