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Moc04g13470 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc04g13470
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr4:10424487..10429973
RNA-Seq ExpressionMoc04g13470
SyntenyMoc04g13470
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RWR83368.1 hypothetical protein CKAN_01212200 [Cinnamomum micranthum f. kanehirae]2.7e-2456.1Show/hide
Query:  GVNEVDAIVALTMQVASLTKQLQSSQLAVNAIQTPPIFCEYCRGNHHSEDCQVGNQFMQGQHEQVQFVGNFNCQPNNPYSNTYKPGWCNHPNFSWRQNQS
        GV+E+D+I ALT QVA+L+KQ+QS  + V+A+Q+  + CE+C GNH   DCQVGN F     EQV +V N++ Q NNPYSNTY PGW NHPNFSW  N  
Subjt:  GVNEVDAIVALTMQVASLTKQLQSSQLAVNAIQTPPIFCEYCRGNHHSEDCQVGNQFMQGQHEQVQFVGNFNCQPNNPYSNTYKPGWCNHPNFSWRQNQS

Query:  QNPTPPPGFQQP--ENKSSLEKV
         +   PP FQQP  E KS LEK+
Subjt:  QNPTPPPGFQQP--ENKSSLEKV

XP_016648321.1 PREDICTED: uncharacterized protein LOC107880735 [Prunus mume]6.4e-2658.68Show/hide
Query:  GVNEVDAIVALTMQVASLTKQLQSSQLAVNAIQTPPIFCEYCRGNHHSEDCQVGNQFMQGQHEQVQFVGNFNCQPNNPYSNTYKPGWCNHPNFSWRQNQS
        GV++VDAI ALT Q+++L+KQL S  L VNAIQTP + CE+C GNH S DC  GN F     +QV  VG+FN Q NNPYSNTY PGW N PNFSW  NQ+
Subjt:  GVNEVDAIVALTMQVASLTKQLQSSQLAVNAIQTPPIFCEYCRGNHHSEDCQVGNQFMQGQHEQVQFVGNFNCQPNNPYSNTYKPGWCNHPNFSWRQNQS

Query:  QNPTPPPGFQQPENKSSLEKV
            PPPGF   E K  LE V
Subjt:  QNPTPPPGFQQPENKSSLEKV

XP_023892546.1 uncharacterized protein LOC112004528 [Quercus suber]3.5e-2445.62Show/hide
Query:  GVNEVDAIVALTMQVASLTKQLQSSQLAVNAIQTPPIFCEYCRGNHHSEDCQVGNQFMQGQHEQVQFVGNFNCQPNNPYSNTYKPGWCNHPNFSWRQNQS
        GV E+D+I +L  Q+A+L++QL   ++ VNAIQT  + C++C GNH S DCQVGN F Q  + Q  +V NF  Q NNPYSNTY PGW NHPNFSW  NQ 
Subjt:  GVNEVDAIVALTMQVASLTKQLQSSQLAVNAIQTPPIFCEYCRGNHHSEDCQVGNQFMQGQHEQVQFVGNFNCQPNNPYSNTYKPGWCNHPNFSWRQNQS

Query:  QNPTPPPGFQQPENKSSLE------------------------KVQVGQLANMMVDRLPG
        Q   PP  F Q E K +LE                        +VQ+GQL++M+ +R  G
Subjt:  QNPTPPPGFQQPENKSSLE------------------------KVQVGQLANMMVDRLPG

XP_023901362.1 uncharacterized protein LOC112013210 [Quercus suber]3.5e-2445.62Show/hide
Query:  GVNEVDAIVALTMQVASLTKQLQSSQLAVNAIQTPPIFCEYCRGNHHSEDCQVGNQFMQGQHEQVQFVGNFNCQPNNPYSNTYKPGWCNHPNFSWRQNQS
        GV E+D+I +L  Q+A+L++QL   ++ VNAIQT  + C++C GNH S DCQVGN F Q  + Q  +V NF  Q NNPYSNTY PGW NHPNFSW  NQ 
Subjt:  GVNEVDAIVALTMQVASLTKQLQSSQLAVNAIQTPPIFCEYCRGNHHSEDCQVGNQFMQGQHEQVQFVGNFNCQPNNPYSNTYKPGWCNHPNFSWRQNQS

Query:  QNPTPPPGFQQPENKSSLE------------------------KVQVGQLANMMVDRLPG
        Q   PP  F Q E K +LE                        +VQ+GQL++M+ +R  G
Subjt:  QNPTPPPGFQQPENKSSLE------------------------KVQVGQLANMMVDRLPG

XP_034899370.1 LOW QUALITY PROTEIN: uncharacterized protein LOC118037487 [Populus alba]1.9e-2546.15Show/hide
Query:  MGVNEVDAIVALTMQVASLTKQLQSSQLAVNAIQTPPIFCEYCRGNHHSEDCQVGNQFMQGQHEQVQFVGNFNCQPNNPYSNTYKPGWCNHPNFSW-RQN
        +GV+E+DAI ALT QV SLT+QL+++QL+ NAI T    C++C GNH SE+CQVGN F Q +H    FV N++ Q NNPYS TY PGW NHPNFSW  Q 
Subjt:  MGVNEVDAIVALTMQVASLTKQLQSSQLAVNAIQTPPIFCEYCRGNHHSEDCQVGNQFMQGQHEQVQFVGNFNCQPNNPYSNTYKPGWCNHPNFSW-RQN

Query:  QSQNPTPPPGFQQPENKSSLE-------------------------------KVQVGQLANMMVDRLPG
          +NPT P   +  + KS LE                               +VQVGQLANM+  R  G
Subjt:  QSQNPTPPPGFQQPENKSSLE-------------------------------KVQVGQLANMMVDRLPG

TrEMBL top hitse value%identityAlignment
A0A3S3N117 Retrotrans_gag domain-containing protein1.3e-2456.1Show/hide
Query:  GVNEVDAIVALTMQVASLTKQLQSSQLAVNAIQTPPIFCEYCRGNHHSEDCQVGNQFMQGQHEQVQFVGNFNCQPNNPYSNTYKPGWCNHPNFSWRQNQS
        GV+E+D+I ALT QVA+L+KQ+QS  + V+A+Q+  + CE+C GNH   DCQVGN F     EQV +V N++ Q NNPYSNTY PGW NHPNFSW  N  
Subjt:  GVNEVDAIVALTMQVASLTKQLQSSQLAVNAIQTPPIFCEYCRGNHHSEDCQVGNQFMQGQHEQVQFVGNFNCQPNNPYSNTYKPGWCNHPNFSWRQNQS

Query:  QNPTPPPGFQQP--ENKSSLEKV
         +   PP FQQP  E KS LEK+
Subjt:  QNPTPPPGFQQP--ENKSSLEKV

A0A6J0ZX64 LOW QUALITY PROTEIN: uncharacterized protein LOC1104129451.8e-2143.53Show/hide
Query:  MGVNEVDAIVALTMQVASLTKQLQSSQLAVNAIQTPPIFCEYCRGNHHSEDCQVGNQFMQGQHEQVQFVGNFNCQPNNPYSNTYKPGWCNHPNFSWRQNQ
        +G  E+DA+  LT QVA+L+K+L +  L V+A+Q   + CE C  +H  + C   +       E VQFVGNFN Q NNPYSNTY PGW NHPNFSW  N 
Subjt:  MGVNEVDAIVALTMQVASLTKQLQSSQLAVNAIQTPPIFCEYCRGNHHSEDCQVGNQFMQGQHEQVQFVGNFNCQPNNPYSNTYKPGWCNHPNFSWRQNQ

Query:  S-QNPTP--PPGFQQ------PENKSSLEKV------------------------QVGQLANMMVDRLPG
           NP P  PPGFQQ      PE KS LE++                        QVGQLAN + +R  G
Subjt:  S-QNPTP--PPGFQQ------PENKSSLEKV------------------------QVGQLANMMVDRLPG

A0A6P5S0R1 Reverse transcriptase3.6e-2244.71Show/hide
Query:  GVNEVDAIVALTMQVASLTKQLQSSQLAVNAIQTPPIFCEYCRGNHHSEDCQVGNQFMQGQHEQVQFVGNFNCQPNNPYSNTYKPGWCNHPNFSWRQNQS
        GV++V+AI ALT Q+++L+KQL S  L VNAIQTP   CE+C  +H S DC  GN F     EQV  VG+FN Q NNPYSNTY P W NHPNFS   NQ+
Subjt:  GVNEVDAIVALTMQVASLTKQLQSSQLAVNAIQTPPIFCEYCRGNHHSEDCQVGNQFMQGQHEQVQFVGNFNCQPNNPYSNTYKPGWCNHPNFSWRQNQS

Query:  QNPTPPPGFQQPENKSSLEKVQVGQLANMMVDRLPGLELMKRRK--IANKEAKANQIPVRWAPRRRKLTK
            PPPGF   E K  LE +      NM        + M + K  + N+ A    + V+     + LT+
Subjt:  QNPTPPPGFQQPENKSSLEKVQVGQLANMMVDRLPGLELMKRRK--IANKEAKANQIPVRWAPRRRKLTK

A0A6P5SHM2 uncharacterized protein LOC1107561911.5e-2053.33Show/hide
Query:  GVNEVDAIVALTMQVASLTKQLQSSQLAVNAIQTPPIF-CEYCRGNHHSEDCQVGNQFMQGQHEQVQFVGNFNCQPNNPYSNTYKPGWCNHPNFSWRQNQ
        GV EVDA+  L  ++++LTK++ S  L+VNAI T   F C++C G H S DC  GN F     EQV  VG FN Q NNPYSNTY PGW NHPNFSW   Q
Subjt:  GVNEVDAIVALTMQVASLTKQLQSSQLAVNAIQTPPIF-CEYCRGNHHSEDCQVGNQFMQGQHEQVQFVGNFNCQPNNPYSNTYKPGWCNHPNFSWRQNQ

Query:  SQNPTPPPGFQQPENKSSLE
        +    PPPGF   E K +LE
Subjt:  SQNPTPPPGFQQPENKSSLE

A0A6P5TXH8 uncharacterized protein LOC1107715043.9e-2143.79Show/hide
Query:  GVNEVDAIVALTMQVASLTKQLQSSQLAVNAIQTPPIF-CEYCRGNHHSEDCQVGNQFMQGQHEQVQFVGNFNCQPNNPYSNTYKPGWCNHPNFSWRQNQ
        GV EVDA+  L  ++++LTK++ S  L+VNAI T   F C++C G H S DC  GN F     EQV  VG FN Q NNPYSNTY PGW NHPNFSW   Q
Subjt:  GVNEVDAIVALTMQVASLTKQLQSSQLAVNAIQTPPIF-CEYCRGNHHSEDCQVGNQFMQGQHEQVQFVGNFNCQPNNPYSNTYKPGWCNHPNFSWRQNQ

Query:  SQNPTPPPGFQQPENKSSLE-------------------------------KVQVGQLANMMVDRLPGL
        +    PPPGF   E K +LE                               +VQVGQLAN++  R  G+
Subjt:  SQNPTPPPGFQQPENKSSLE-------------------------------KVQVGQLANMMVDRLPGL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGTAAATGAGGTGGATGCTATTGTTGCATTGACCATGCAGGTTGCTTCCCTTACCAAGCAACTTCAATCAAGTCAGCTTGCGGTAAATGCAATTCAAACACCACC
TATATTTTGTGAATATTGTCGTGGTAACCATCATAGTGAAGATTGTCAAGTGGGGAACCAATTTATGCAAGGCCAACATGAGCAAGTTCAGTTTGTTGGGAATTTTAATT
GCCAGCCAAATAACCCTTATTCCAACACCTATAAGCCAGGTTGGTGCAATCATCCTAACTTCTCATGGAGGCAAAATCAGAGTCAGAATCCTACTCCACCACCTGGATTT
CAACAACCAGAGAATAAATCTAGCCTTGAAAAGGTACAAGTTGGTCAACTTGCCAACATGATGGTGGATAGGCTTCCTGGACTTGAGTTGATGAAGAGGAGAAAAATAGC
AAATAAAGAAGCAAAAGCGAACCAAATTCCAGTGCGTTGGGCGCCTAGGCGCCGAAAATTGACAAAATGGCAGAATGTTAGCACCGGCTTGCAGAATGTTGGGCGCCTAG
GTGCTATGAAGTTGGAAGCGGGGTTTTTGCTGGCACGTGTTTGGGCGCATAGGCACCGAAATTGGGTGCCTAGAGTGGGGGCCATTTTTATAGAGAACAAAAACGATTCG
AAACGAGACAAGAAATTGAAGCCCGAGATCATCGACTGGGGGAGACCGACCTGCGACATAACGGGCCGGCCCAAAGGACGACCTAGCGCCGAGGCCGTCACAGCGCTGAG
ACCTCCTGGCGCCGAGGCGCCTACTTCTCACCTTCGCCTTCGGGCCAAGGTATCATTTGAGCCTCCTCCACTCGGATCTACATCAGGAGGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGAGTAAATGAGGTGGATGCTATTGTTGCATTGACCATGCAGGTTGCTTCCCTTACCAAGCAACTTCAATCAAGTCAGCTTGCGGTAAATGCAATTCAAACACCACC
TATATTTTGTGAATATTGTCGTGGTAACCATCATAGTGAAGATTGTCAAGTGGGGAACCAATTTATGCAAGGCCAACATGAGCAAGTTCAGTTTGTTGGGAATTTTAATT
GCCAGCCAAATAACCCTTATTCCAACACCTATAAGCCAGGTTGGTGCAATCATCCTAACTTCTCATGGAGGCAAAATCAGAGTCAGAATCCTACTCCACCACCTGGATTT
CAACAACCAGAGAATAAATCTAGCCTTGAAAAGGTACAAGTTGGTCAACTTGCCAACATGATGGTGGATAGGCTTCCTGGACTTGAGTTGATGAAGAGGAGAAAAATAGC
AAATAAAGAAGCAAAAGCGAACCAAATTCCAGTGCGTTGGGCGCCTAGGCGCCGAAAATTGACAAAATGGCAGAATGTTAGCACCGGCTTGCAGAATGTTGGGCGCCTAG
GTGCTATGAAGTTGGAAGCGGGGTTTTTGCTGGCACGTGTTTGGGCGCATAGGCACCGAAATTGGGTGCCTAGAGTGGGGGCCATTTTTATAGAGAACAAAAACGATTCG
AAACGAGACAAGAAATTGAAGCCCGAGATCATCGACTGGGGGAGACCGACCTGCGACATAACGGGCCGGCCCAAAGGACGACCTAGCGCCGAGGCCGTCACAGCGCTGAG
ACCTCCTGGCGCCGAGGCGCCTACTTCTCACCTTCGCCTTCGGGCCAAGGTATCATTTGAGCCTCCTCCACTCGGATCTACATCAGGAGGTTAA
Protein sequenceShow/hide protein sequence
MGVNEVDAIVALTMQVASLTKQLQSSQLAVNAIQTPPIFCEYCRGNHHSEDCQVGNQFMQGQHEQVQFVGNFNCQPNNPYSNTYKPGWCNHPNFSWRQNQSQNPTPPPGF
QQPENKSSLEKVQVGQLANMMVDRLPGLELMKRRKIANKEAKANQIPVRWAPRRRKLTKWQNVSTGLQNVGRLGAMKLEAGFLLARVWAHRHRNWVPRVGAIFIENKNDS
KRDKKLKPEIIDWGRPTCDITGRPKGRPSAEAVTALRPPGAEAPTSHLRLRAKVSFEPPPLGSTSGG