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Moc04g13530 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc04g13530
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrotransposable element Tf2
Genome locationchr4:10471033..10472066
RNA-Seq ExpressionMoc04g13530
SyntenyMoc04g13530
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0056777.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]5.6e-3566.93Show/hide
Query:  LGSSGNFKTLSKALRIKWWEKFDYSYLEAEKMKIWFKTNVHLQDMTRQEDESFLLAKNAVMSSLAGAGSQADFNSVLNTVAVQISDP-DDLQADVDSSVS
        LG SGNFK LSK+LRIKWWEKF+YS+LE  K+K WFK N+HLQDMTRQEDE+FLL KNAVMS+LAGA +Q +FNSV+N V V +SD  DDL  DV S  S
Subjt:  LGSSGNFKTLSKALRIKWWEKFDYSYLEAEKMKIWFKTNVHLQDMTRQEDESFLLAKNAVMSSLAGAGSQADFNSVLNTVAVQISDP-DDLQADVDSSVS

Query:  VNNDVEDDEDDFNPFEGYDINDPYLDS
        VNN    D+ D++P+EG DINDP+LD+
Subjt:  VNNDVEDDEDDFNPFEGYDINDPYLDS

KAA0063832.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]4.3e-3566.93Show/hide
Query:  LGSSGNFKTLSKALRIKWWEKFDYSYLEAEKMKIWFKTNVHLQDMTRQEDESFLLAKNAVMSSLAGAGSQADFNSVLNTVAVQISDP-DDLQADVDSSVS
        LG SGNFK LSK+LRIKWWEKF+YS+LE  K+K WFK N+HLQDMTRQEDE+FLL KNAVMS+LAGA +Q +FNSV+N V V +SD  DDL  DV S  S
Subjt:  LGSSGNFKTLSKALRIKWWEKFDYSYLEAEKMKIWFKTNVHLQDMTRQEDESFLLAKNAVMSSLAGAGSQADFNSVLNTVAVQISDP-DDLQADVDSSVS

Query:  VNNDVEDDEDDFNPFEGYDINDPYLDS
        VNN    D+ D++P+EG DINDP+LD+
Subjt:  VNNDVEDDEDDFNPFEGYDINDPYLDS

KAA0068172.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]7.3e-3566.93Show/hide
Query:  LGSSGNFKTLSKALRIKWWEKFDYSYLEAEKMKIWFKTNVHLQDMTRQEDESFLLAKNAVMSSLAGAGSQADFNSVLNTVAVQISDP-DDLQADVDSSVS
        LG SGNFK LSK+LRIKWWEKF+YS+LE  K+K WFK N+HLQDMTRQEDE+FLL KNAVMS+LAGA +Q +FNSV+N V V +SD  DDL  DV S  S
Subjt:  LGSSGNFKTLSKALRIKWWEKFDYSYLEAEKMKIWFKTNVHLQDMTRQEDESFLLAKNAVMSSLAGAGSQADFNSVLNTVAVQISDP-DDLQADVDSSVS

Query:  VNNDVEDDEDDFNPFEGYDINDPYLDS
        VNN    D+ D++P+EG DINDP+LD+
Subjt:  VNNDVEDDEDDFNPFEGYDINDPYLDS

TYJ96700.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]1.3e-3658.44Show/hide
Query:  QNLLFRGILPRSLKSSGQRFFSQGPQLMLGSSGNFKTLSKALRIKWWEKFDYSYLEAEKMKIWFKTNVHLQDMTRQEDESFLLAKNAVMSSLAGAGSQAD
        Q L F+GILP  LK  GQ++ S   QLMLG SGNFK LSK+LRIKWWE  +YS+LE  K+K WFK N+HLQDMTRQEDES L+ KNAVMS+LAGA +Q +
Subjt:  QNLLFRGILPRSLKSSGQRFFSQGPQLMLGSSGNFKTLSKALRIKWWEKFDYSYLEAEKMKIWFKTNVHLQDMTRQEDESFLLAKNAVMSSLAGAGSQAD

Query:  FNSVLNTVAVQISDPDDLQADVDSSVSVNNDVEDDEDDFNPFEGYDINDPYLDS
        FN V+N V V + D +D     D+S +  NDV  D+ D++P++G DINDP LD+
Subjt:  FNSVLNTVAVQISDPDDLQADVDSSVSVNNDVEDDEDDFNPFEGYDINDPYLDS

TYK19825.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]2.8e-3470.91Show/hide
Query:  LGSSGNFKTLSKALRIKWWEKFDYSYLEAEKMKIWFKTNVHLQDMTRQEDESFLLAKNAVMSSLAGAGSQADFNSVLNTVAVQISDPDDLQADVDSSVSV
        LG S NFK LSKALRIKWWEKFDYS+LE  KMK WFK N+HLQD+TR+EDE+FLL KN +MSSL   G Q +FNSV+NTVAVQIS+PDD QA+V+S  SV
Subjt:  LGSSGNFKTLSKALRIKWWEKFDYSYLEAEKMKIWFKTNVHLQDMTRQEDESFLLAKNAVMSSLAGAGSQADFNSVLNTVAVQISDPDDLQADVDSSVSV

Query:  NNDVEDDEDD
        NN +ED++DD
Subjt:  NNDVEDDEDD

TrEMBL top hitse value%identityAlignment
A0A5A7UVN1 Retrotransposable element Tf22.7e-3566.93Show/hide
Query:  LGSSGNFKTLSKALRIKWWEKFDYSYLEAEKMKIWFKTNVHLQDMTRQEDESFLLAKNAVMSSLAGAGSQADFNSVLNTVAVQISDP-DDLQADVDSSVS
        LG SGNFK LSK+LRIKWWEKF+YS+LE  K+K WFK N+HLQDMTRQEDE+FLL KNAVMS+LAGA +Q +FNSV+N V V +SD  DDL  DV S  S
Subjt:  LGSSGNFKTLSKALRIKWWEKFDYSYLEAEKMKIWFKTNVHLQDMTRQEDESFLLAKNAVMSSLAGAGSQADFNSVLNTVAVQISDP-DDLQADVDSSVS

Query:  VNNDVEDDEDDFNPFEGYDINDPYLDS
        VNN    D+ D++P+EG DINDP+LD+
Subjt:  VNNDVEDDEDDFNPFEGYDINDPYLDS

A0A5A7V6D1 Retrotransposable element Tf22.1e-3566.93Show/hide
Query:  LGSSGNFKTLSKALRIKWWEKFDYSYLEAEKMKIWFKTNVHLQDMTRQEDESFLLAKNAVMSSLAGAGSQADFNSVLNTVAVQISDP-DDLQADVDSSVS
        LG SGNFK LSK+LRIKWWEKF+YS+LE  K+K WFK N+HLQDMTRQEDE+FLL KNAVMS+LAGA +Q +FNSV+N V V +SD  DDL  DV S  S
Subjt:  LGSSGNFKTLSKALRIKWWEKFDYSYLEAEKMKIWFKTNVHLQDMTRQEDESFLLAKNAVMSSLAGAGSQADFNSVLNTVAVQISDP-DDLQADVDSSVS

Query:  VNNDVEDDEDDFNPFEGYDINDPYLDS
        VNN    D+ D++P+EG DINDP+LD+
Subjt:  VNNDVEDDEDDFNPFEGYDINDPYLDS

A0A5A7VIK9 Retrotransposable element Tf23.5e-3566.93Show/hide
Query:  LGSSGNFKTLSKALRIKWWEKFDYSYLEAEKMKIWFKTNVHLQDMTRQEDESFLLAKNAVMSSLAGAGSQADFNSVLNTVAVQISDP-DDLQADVDSSVS
        LG SGNFK LSK+LRIKWWEKF+YS+LE  K+K WFK N+HLQDMTRQEDE+FLL KNAVMS+LAGA +Q +FNSV+N V V +SD  DDL  DV S  S
Subjt:  LGSSGNFKTLSKALRIKWWEKFDYSYLEAEKMKIWFKTNVHLQDMTRQEDESFLLAKNAVMSSLAGAGSQADFNSVLNTVAVQISDP-DDLQADVDSSVS

Query:  VNNDVEDDEDDFNPFEGYDINDPYLDS
        VNN    D+ D++P+EG DINDP+LD+
Subjt:  VNNDVEDDEDDFNPFEGYDINDPYLDS

A0A5D3BA13 Retrotransposable element Tf26.4e-3758.44Show/hide
Query:  QNLLFRGILPRSLKSSGQRFFSQGPQLMLGSSGNFKTLSKALRIKWWEKFDYSYLEAEKMKIWFKTNVHLQDMTRQEDESFLLAKNAVMSSLAGAGSQAD
        Q L F+GILP  LK  GQ++ S   QLMLG SGNFK LSK+LRIKWWE  +YS+LE  K+K WFK N+HLQDMTRQEDES L+ KNAVMS+LAGA +Q +
Subjt:  QNLLFRGILPRSLKSSGQRFFSQGPQLMLGSSGNFKTLSKALRIKWWEKFDYSYLEAEKMKIWFKTNVHLQDMTRQEDESFLLAKNAVMSSLAGAGSQAD

Query:  FNSVLNTVAVQISDPDDLQADVDSSVSVNNDVEDDEDDFNPFEGYDINDPYLDS
        FN V+N V V + D +D     D+S +  NDV  D+ D++P++G DINDP LD+
Subjt:  FNSVLNTVAVQISDPDDLQADVDSSVSVNNDVEDDEDDFNPFEGYDINDPYLDS

A0A5D3D8C1 Retrotransposable element Tf21.3e-3470.91Show/hide
Query:  LGSSGNFKTLSKALRIKWWEKFDYSYLEAEKMKIWFKTNVHLQDMTRQEDESFLLAKNAVMSSLAGAGSQADFNSVLNTVAVQISDPDDLQADVDSSVSV
        LG S NFK LSKALRIKWWEKFDYS+LE  KMK WFK N+HLQD+TR+EDE+FLL KN +MSSL   G Q +FNSV+NTVAVQIS+PDD QA+V+S  SV
Subjt:  LGSSGNFKTLSKALRIKWWEKFDYSYLEAEKMKIWFKTNVHLQDMTRQEDESFLLAKNAVMSSLAGAGSQADFNSVLNTVAVQISDPDDLQADVDSSVSV

Query:  NNDVEDDEDD
        NN +ED++DD
Subjt:  NNDVEDDEDD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTACGGCAGCCGCCTCTTCAAAACCTACTGTTCCGAGGAATCCTTCCTCGTTCTCTCAAATCGTCAGGCCAAAGGTTTTTCAGCCAAGGCCCCCAATTAATGCTAGG
GTCCAGTGGCAATTTCAAAACGTTGAGCAAAGCTTTACGCATCAAATGGTGGGAGAAATTTGATTATTCCTACCTAGAAGCTGAAAAGATGAAAATCTGGTTCAAGACCA
ATGTTCATCTTCAAGACATGACGAGGCAAGAAGACGAGAGTTTCCTTCTAGCCAAAAACGCCGTCATGAGCTCGCTAGCTGGAGCCGGATCTCAAGCCGACTTCAACTCT
GTTCTGAATACCGTCGCGGTTCAAATCTCTGATCCAGACGACCTTCAGGCGGATGTTGATTCCTCCGTCTCTGTCAATAATGATGTTGAAGACGACGAAGACGACTTCAA
TCCCTTCGAAGGCTACGACATCAATGATCCATATCTAGACTCATAG
mRNA sequenceShow/hide mRNA sequence
ATGCTACGGCAGCCGCCTCTTCAAAACCTACTGTTCCGAGGAATCCTTCCTCGTTCTCTCAAATCGTCAGGCCAAAGGTTTTTCAGCCAAGGCCCCCAATTAATGCTAGG
GTCCAGTGGCAATTTCAAAACGTTGAGCAAAGCTTTACGCATCAAATGGTGGGAGAAATTTGATTATTCCTACCTAGAAGCTGAAAAGATGAAAATCTGGTTCAAGACCA
ATGTTCATCTTCAAGACATGACGAGGCAAGAAGACGAGAGTTTCCTTCTAGCCAAAAACGCCGTCATGAGCTCGCTAGCTGGAGCCGGATCTCAAGCCGACTTCAACTCT
GTTCTGAATACCGTCGCGGTTCAAATCTCTGATCCAGACGACCTTCAGGCGGATGTTGATTCCTCCGTCTCTGTCAATAATGATGTTGAAGACGACGAAGACGACTTCAA
TCCCTTCGAAGGCTACGACATCAATGATCCATATCTAGACTCATAG
Protein sequenceShow/hide protein sequence
MLRQPPLQNLLFRGILPRSLKSSGQRFFSQGPQLMLGSSGNFKTLSKALRIKWWEKFDYSYLEAEKMKIWFKTNVHLQDMTRQEDESFLLAKNAVMSSLAGAGSQADFNS
VLNTVAVQISDPDDLQADVDSSVSVNNDVEDDEDDFNPFEGYDINDPYLDS