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Moc04g13610 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc04g13610
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionGag/pol protein
Genome locationchr4:10503103..10503588
RNA-Seq ExpressionMoc04g13610
SyntenyMoc04g13610
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADJ18449.1 gag/pol protein, partial [Bryonia dioica]6.8e-4969.64Show/hide
Query:  MFEQPFSTLRHETLKYVYNKHMKEGTSV-----DMMVHFNTAEVNGATIDEASQVSFIMESLPKSFIPFQTNAALNKIEFNLTTLLNELQRFQNLTKANG
        MF QP  +LRHE +K++Y K MKEGTSV     DMM+HFN AEVNG  IDEA+QVSFI++SLPKSF+PFQTNA+LNKIEFNLTTLLNELQRFQNLT + G
Subjt:  MFEQPFSTLRHETLKYVYNKHMKEGTSV-----DMMVHFNTAEVNGATIDEASQVSFIMESLPKSFIPFQTNAALNKIEFNLTTLLNELQRFQNLTKANG

Query:  KEAEANVAATK-KIPRGSTSKAKAGPSKNRNVQMKKKKEKGKAPVVDK-GKNVAKEICFRCNQDGHWK
        KE EANVA TK K  RGS+SK K GPSK    QM KKK KGKAP   K  KN  K  CF CNQDGHWK
Subjt:  KEAEANVAATK-KIPRGSTSKAKAGPSKNRNVQMKKKKEKGKAPVVDK-GKNVAKEICFRCNQDGHWK

KAA0053407.1 gag/pol protein [Cucumis melo var. makuwa]3.1e-4665.48Show/hide
Query:  MFEQPFSTLRHETLKYVYNKHMKEGTSV-----DMMVHFNTAEVNGATIDEASQVSFIMESLPKSFIPFQTNAALNKIEFNLTTLLNELQRFQNLTKANG
        MF QP  +LRHE +KY+Y K MKEGTSV     DMM+HFN  EVNG  IDEA+QVSFI+ESLPKSFIPFQTNA+LNKIEFNLTTLLNELQRFQNLTK  G
Subjt:  MFEQPFSTLRHETLKYVYNKHMKEGTSV-----DMMVHFNTAEVNGATIDEASQVSFIMESLPKSFIPFQTNAALNKIEFNLTTLLNELQRFQNLTKANG

Query:  KEAEANVAATK-KIPRGSTSKAKAGPSK-NRNVQMKKKKEKGKAPVVDK-GKNVAKEICFRCNQDGHW
        KE EANVA TK K  RGS+ ++K+GPSK NR ++   KK KGK P  +K  K   K  C+ C ++GHW
Subjt:  KEAEANVAATK-KIPRGSTSKAKAGPSK-NRNVQMKKKKEKGKAPVVDK-GKNVAKEICFRCNQDGHW

KAA0059877.1 gag/pol protein [Cucumis melo var. makuwa]4.1e-4666.07Show/hide
Query:  MFEQPFSTLRHETLKYVYNKHMKEGTSV-----DMMVHFNTAEVNGATIDEASQVSFIMESLPKSFIPFQTNAALNKIEFNLTTLLNELQRFQNLTKANG
        MF Q   +LRHE +KY+Y K MKEGTSV     DMM+HFN AEVNG  IDEA+QVSFI+ESLPKSFIPFQTNA+LNKIEFNLTTLLNELQ FQNLTK   
Subjt:  MFEQPFSTLRHETLKYVYNKHMKEGTSV-----DMMVHFNTAEVNGATIDEASQVSFIMESLPKSFIPFQTNAALNKIEFNLTTLLNELQRFQNLTKANG

Query:  KEAEANVAATK-KIPRGSTSKAKAGPSK-NRNVQMKKKKEKGKAPVVDKGKNVA-KEICFRCNQDGHW
        KE EANVA TK K  RGS+SK+K GPS+ NR ++   KK KGK P  +KGK  A K  C+ C ++GHW
Subjt:  KEAEANVAATK-KIPRGSTSKAKAGPSK-NRNVQMKKKKEKGKAPVVDKGKNVA-KEICFRCNQDGHW

KAA0063026.1 gag/pol protein [Cucumis melo var. makuwa]1.5e-4867.86Show/hide
Query:  MFEQPFSTLRHETLKYVYNKHMKEGTSV-----DMMVHFNTAEVNGATIDEASQVSFIMESLPKSFIPFQTNAALNKIEFNLTTLLNELQRFQNLTKANG
        MF QP  +LRHET+KY+Y K MKEGTSV     DMM+HFN AEVNG  IDEA+Q+SFI+ESLPKSFIPFQ NA+LNKIEFNLTTLLN+LQRFQNLTK  G
Subjt:  MFEQPFSTLRHETLKYVYNKHMKEGTSV-----DMMVHFNTAEVNGATIDEASQVSFIMESLPKSFIPFQTNAALNKIEFNLTTLLNELQRFQNLTKANG

Query:  KEAEANVAATK-KIPRGSTSKAKAGPSK-NRNVQMKKKKEKGKAPVVDKG-KNVAKEICFRCNQDGHW
        KE EANVA TK K  RGS+SK+KAGPSK NR +   KKK  GK P ++KG K V K  C+ C ++GHW
Subjt:  KEAEANVAATK-KIPRGSTSKAKAGPSK-NRNVQMKKKKEKGKAPVVDKG-KNVAKEICFRCNQDGHW

TYK05765.1 gag/pol protein [Cucumis melo var. makuwa]1.8e-4666.07Show/hide
Query:  MFEQPFSTLRHETLKYVYNKHMKEGTSV-----DMMVHFNTAEVNGATIDEASQVSFIMESLPKSFIPFQTNAALNKIEFNLTTLLNELQRFQNLTKANG
        MF QP   +RH+ +KY+Y K MKEGTSV     DMM+HFN A+VNG  ID+ASQVSFI+ESLPKSFIPFQTNA+LNKIEFNLTTLLNELQRFQNLTK  G
Subjt:  MFEQPFSTLRHETLKYVYNKHMKEGTSV-----DMMVHFNTAEVNGATIDEASQVSFIMESLPKSFIPFQTNAALNKIEFNLTTLLNELQRFQNLTKANG

Query:  KEAEANVAATK-KIPRGSTSKAKAGPSK-NRNVQMKKKKEKGKAPVVDKGKNVA-KEICFRCNQDGHW
        KE EANVA TK K  RGS+SK+K GPSK NR ++   KK KGK P  +KGK    K  C+R  ++GHW
Subjt:  KEAEANVAATK-KIPRGSTSKAKAGPSK-NRNVQMKKKKEKGKAPVVDKGKNVA-KEICFRCNQDGHW

TrEMBL top hitse value%identityAlignment
A0A5A7UFY5 Gag/pol protein1.5e-4665.48Show/hide
Query:  MFEQPFSTLRHETLKYVYNKHMKEGTSV-----DMMVHFNTAEVNGATIDEASQVSFIMESLPKSFIPFQTNAALNKIEFNLTTLLNELQRFQNLTKANG
        MF QP  +LRHE +KY+Y K MKEGTSV     DMM+HFN  EVNG  IDEA+QVSFI+ESLPKSFIPFQTNA+LNKIEFNLTTLLNELQRFQNLTK  G
Subjt:  MFEQPFSTLRHETLKYVYNKHMKEGTSV-----DMMVHFNTAEVNGATIDEASQVSFIMESLPKSFIPFQTNAALNKIEFNLTTLLNELQRFQNLTKANG

Query:  KEAEANVAATK-KIPRGSTSKAKAGPSK-NRNVQMKKKKEKGKAPVVDK-GKNVAKEICFRCNQDGHW
        KE EANVA TK K  RGS+ ++K+GPSK NR ++   KK KGK P  +K  K   K  C+ C ++GHW
Subjt:  KEAEANVAATK-KIPRGSTSKAKAGPSK-NRNVQMKKKKEKGKAPVVDK-GKNVAKEICFRCNQDGHW

A0A5A7V9B0 Gag/pol protein7.3e-4967.86Show/hide
Query:  MFEQPFSTLRHETLKYVYNKHMKEGTSV-----DMMVHFNTAEVNGATIDEASQVSFIMESLPKSFIPFQTNAALNKIEFNLTTLLNELQRFQNLTKANG
        MF QP  +LRHET+KY+Y K MKEGTSV     DMM+HFN AEVNG  IDEA+Q+SFI+ESLPKSFIPFQ NA+LNKIEFNLTTLLN+LQRFQNLTK  G
Subjt:  MFEQPFSTLRHETLKYVYNKHMKEGTSV-----DMMVHFNTAEVNGATIDEASQVSFIMESLPKSFIPFQTNAALNKIEFNLTTLLNELQRFQNLTKANG

Query:  KEAEANVAATK-KIPRGSTSKAKAGPSK-NRNVQMKKKKEKGKAPVVDKG-KNVAKEICFRCNQDGHW
        KE EANVA TK K  RGS+SK+KAGPSK NR +   KKK  GK P ++KG K V K  C+ C ++GHW
Subjt:  KEAEANVAATK-KIPRGSTSKAKAGPSK-NRNVQMKKKKEKGKAPVVDKG-KNVAKEICFRCNQDGHW

A0A5D3C306 Gag/pol protein8.9e-4766.07Show/hide
Query:  MFEQPFSTLRHETLKYVYNKHMKEGTSV-----DMMVHFNTAEVNGATIDEASQVSFIMESLPKSFIPFQTNAALNKIEFNLTTLLNELQRFQNLTKANG
        MF QP   +RH+ +KY+Y K MKEGTSV     DMM+HFN A+VNG  ID+ASQVSFI+ESLPKSFIPFQTNA+LNKIEFNLTTLLNELQRFQNLTK  G
Subjt:  MFEQPFSTLRHETLKYVYNKHMKEGTSV-----DMMVHFNTAEVNGATIDEASQVSFIMESLPKSFIPFQTNAALNKIEFNLTTLLNELQRFQNLTKANG

Query:  KEAEANVAATK-KIPRGSTSKAKAGPSK-NRNVQMKKKKEKGKAPVVDKGKNVA-KEICFRCNQDGHW
        KE EANVA TK K  RGS+SK+K GPSK NR ++   KK KGK P  +KGK    K  C+R  ++GHW
Subjt:  KEAEANVAATK-KIPRGSTSKAKAGPSK-NRNVQMKKKKEKGKAPVVDKGKNVA-KEICFRCNQDGHW

A0A5D3DMH3 Gag/pol protein2.0e-4666.07Show/hide
Query:  MFEQPFSTLRHETLKYVYNKHMKEGTSV-----DMMVHFNTAEVNGATIDEASQVSFIMESLPKSFIPFQTNAALNKIEFNLTTLLNELQRFQNLTKANG
        MF Q   +LRHE +KY+Y K MKEGTSV     DMM+HFN AEVNG  IDEA+QVSFI+ESLPKSFIPFQTNA+LNKIEFNLTTLLNELQ FQNLTK   
Subjt:  MFEQPFSTLRHETLKYVYNKHMKEGTSV-----DMMVHFNTAEVNGATIDEASQVSFIMESLPKSFIPFQTNAALNKIEFNLTTLLNELQRFQNLTKANG

Query:  KEAEANVAATK-KIPRGSTSKAKAGPSK-NRNVQMKKKKEKGKAPVVDKGKNVA-KEICFRCNQDGHW
        KE EANVA TK K  RGS+SK+K GPS+ NR ++   KK KGK P  +KGK  A K  C+ C ++GHW
Subjt:  KEAEANVAATK-KIPRGSTSKAKAGPSK-NRNVQMKKKKEKGKAPVVDKGKNVA-KEICFRCNQDGHW

E2GK51 Gag/pol protein (Fragment)3.3e-4969.64Show/hide
Query:  MFEQPFSTLRHETLKYVYNKHMKEGTSV-----DMMVHFNTAEVNGATIDEASQVSFIMESLPKSFIPFQTNAALNKIEFNLTTLLNELQRFQNLTKANG
        MF QP  +LRHE +K++Y K MKEGTSV     DMM+HFN AEVNG  IDEA+QVSFI++SLPKSF+PFQTNA+LNKIEFNLTTLLNELQRFQNLT + G
Subjt:  MFEQPFSTLRHETLKYVYNKHMKEGTSV-----DMMVHFNTAEVNGATIDEASQVSFIMESLPKSFIPFQTNAALNKIEFNLTTLLNELQRFQNLTKANG

Query:  KEAEANVAATK-KIPRGSTSKAKAGPSKNRNVQMKKKKEKGKAPVVDK-GKNVAKEICFRCNQDGHWK
        KE EANVA TK K  RGS+SK K GPSK    QM KKK KGKAP   K  KN  K  CF CNQDGHWK
Subjt:  KEAEANVAATK-KIPRGSTSKAKAGPSKNRNVQMKKKKEKGKAPVVDK-GKNVAKEICFRCNQDGHWK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCGAGCAACCTTTTTCGACCTTGAGACACGAGACACTTAAATACGTTTACAACAAACATATGAAGGAGGGGACCTCTGTGGACATGATGGTTCACTTCAAT
ACTGCTGAAGTGAACGGAGCCACCATTGATGAGGCAAGTCAAGTAAGTTTTATTATGGAGTCTCTTCCGAAGAGCTTCATACCATTTCAGACCAATGCTGCTCTA
AATAAAATAGAATTCAACTTGACAACCCTTCTAAATGAGCTCCAGCGTTTCCAGAACCTTACTAAGGCTAACGGGAAGGAAGCGGAGGCAAACGTTGCCGCCACA
AAGAAAATACCAAGAGGTTCGACCTCTAAAGCAAAAGCTGGACCTTCAAAGAACAGAAATGTTCAAATGAAGAAGAAGAAGGAAAAGGGGAAGGCTCCCGTGGTT
GACAAGGGAAAGAATGTTGCAAAGGAAATCTGTTTCCGTTGCAATCAAGATGGGCATTGGAAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTCGAGCAACCTTTTTCGACCTTGAGACACGAGACACTTAAATACGTTTACAACAAACATATGAAGGAGGGGACCTCTGTGGACATGATGGTTCACTTCAAT
ACTGCTGAAGTGAACGGAGCCACCATTGATGAGGCAAGTCAAGTAAGTTTTATTATGGAGTCTCTTCCGAAGAGCTTCATACCATTTCAGACCAATGCTGCTCTA
AATAAAATAGAATTCAACTTGACAACCCTTCTAAATGAGCTCCAGCGTTTCCAGAACCTTACTAAGGCTAACGGGAAGGAAGCGGAGGCAAACGTTGCCGCCACA
AAGAAAATACCAAGAGGTTCGACCTCTAAAGCAAAAGCTGGACCTTCAAAGAACAGAAATGTTCAAATGAAGAAGAAGAAGGAAAAGGGGAAGGCTCCCGTGGTT
GACAAGGGAAAGAATGTTGCAAAGGAAATCTGTTTCCGTTGCAATCAAGATGGGCATTGGAAGTGA
Protein sequenceShow/hide protein sequence
MFEQPFSTLRHETLKYVYNKHMKEGTSVDMMVHFNTAEVNGATIDEASQVSFIMESLPKSFIPFQTNAALNKIEFNLTTLLNELQRFQNLTKANGKEAEANVAAT
KKIPRGSTSKAKAGPSKNRNVQMKKKKEKGKAPVVDKGKNVAKEICFRCNQDGHWK