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Moc04g13960 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc04g13960
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrotransposon protein
Genome locationchr4:10721534..10724874
RNA-Seq ExpressionMoc04g13960
SyntenyMoc04g13960
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK02434.1 retrotransposon protein [Cucumis melo var. makuwa]8.6e-0444.19Show/hide
Query:  LSTSQGEYLQEDDDLLVYSIVSTSTDMLPSDTSPF-VSDPSLPPITQVYSQRHP--PSITCSIPVASSSVDPGTNDDLFIALRKEL
        +ST+    L E+DDL +Y I S+++   P    PF VS PS PPI  VYS+R P  PS  C  P+ S   DPG++DDL +   K L
Subjt:  LSTSQGEYLQEDDDLLVYSIVSTSTDMLPSDTSPF-VSDPSLPPITQVYSQRHP--PSITCSIPVASSSVDPGTNDDLFIALRKEL
TrEMBL top hitse value%identityAlignment
A0A5A7TGL5 Retrotransposon protein5.5e-0444.19Show/hide
Query:  LSTSQGEYLQEDDDLLVYSIVSTSTDMLPSDTSPF-VSDPSLPPITQVYSQRHP--PSITCSIPVASSSVDPGTNDDLFIALRKEL
        +ST+    L E+DDL +Y I S+++   P    PF VS PS PPI  VYS+R P  PS  C  P+ S   DPG++DDL +   K L
Subjt:  LSTSQGEYLQEDDDLLVYSIVSTSTDMLPSDTSPF-VSDPSLPPITQVYSQRHP--PSITCSIPVASSSVDPGTNDDLFIALRKEL
A0A5D3BTE3 Retrotransposon protein4.2e-0444.19Show/hide
Query:  LSTSQGEYLQEDDDLLVYSIVSTSTDMLPSDTSPF-VSDPSLPPITQVYSQRHP--PSITCSIPVASSSVDPGTNDDLFIALRKEL
        +ST+    L E+DDL +Y I S+++   P    PF VS PS PPI  VYS+R P  PS  C  P+ S   DPG++DDL +   K L
Subjt:  LSTSQGEYLQEDDDLLVYSIVSTSTDMLPSDTSPF-VSDPSLPPITQVYSQRHP--PSITCSIPVASSSVDPGTNDDLFIALRKEL
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCGCCCTAAGCTCACCAAATAAGACCCCAAATACTCTTTTTTCATCATCCTTGAGTACCAGTCAAGGGGAGTATTTACAGGAAGATGATGACCTTCTTGTC
TATTCCATTGTCTCTACTTCTACAGACATGCTCCCTAGCGATACATCTCCCTTTGTGTCTGATCCTTCTCTCCCACCTATTACTCAAGTTTATTCTCAACGGCAT
CCTCCTTCGATCACATGCTCTATACCAGTAGCTTCGTCTTCTGTGGATCCAGGAACAAATGATGATCTTTTTATTGCTCTTCGGAAAGAGCTAAGAATAAGAGAA
GTGGTGTCATCTGCTATGGTAACATCAGGCAAAGATGTGAATATGGTGAAAAGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTCGCCCTAAGCTCACCAAATAAGACCCCAAATACTCTTTTTTCATCATCCTTGAGTACCAGTCAAGGGGAGTATTTACAGGAAGATGATGACCTTCTTGTC
TATTCCATTGTCTCTACTTCTACAGACATGCTCCCTAGCGATACATCTCCCTTTGTGTCTGATCCTTCTCTCCCACCTATTACTCAAGTTTATTCTCAACGGCAT
CCTCCTTCGATCACATGCTCTATACCAGTAGCTTCGTCTTCTGTGGATCCAGGAACAAATGATGATCTTTTTATTGCTCTTCGGAAAGAGCTAAGAATAAGAGAA
GTGGTGTCATCTGCTATGGTAACATCAGGCAAAGATGTGAATATGGTGAAAAGGTAG
Protein sequenceShow/hide protein sequence
MFALSSPNKTPNTLFSSSLSTSQGEYLQEDDDLLVYSIVSTSTDMLPSDTSPFVSDPSLPPITQVYSQRHPPSITCSIPVASSSVDPGTNDDLFIALRKELRIRE
VVSSAMVTSGKDVNMVKR