; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc04g13980 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc04g13980
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr4:10734569..10735274
RNA-Seq ExpressionMoc04g13980
SyntenyMoc04g13980
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022157400.1 uncharacterized protein LOC111024107 [Momordica charantia]2.3e-4145.05Show/hide
Query:  MQKYVAHAFNDLNSRISNSLPQAVQFKLKPVMLQMLQTMGQFEGLTNEDPYFHLESFIEIANAFQLPGVSKDALRLKLFPFSLRDNERTWLNALEPNSIT
        M+ Y A    DLNS + N LP   QF+ KP+MLQML  + QF GL +EDP  HL+SFI++AN  +LPG+S DALRL LFPFSL      WLNA    +IT
Subjt:  MQKYVAHAFNDLNSRISNSLPQAVQFKLKPVMLQMLQTMGQFEGLTNEDPYFHLESFIEIANAFQLPGVSKDALRLKLFPFSLRDNERTWLNALEPNSIT

Query:  TWAELTDKFLTKHHTLTRNADLREDIVSFGQKENKV-------------------------IEQFYNGLDCSSRMMLNIVANDSLLEKSVIEIVDILIKM
        TW+++ DKFL K+   TRNAD+RE+I+SF QKEN+                          IE F+ G D  ++MMLN  AN     KS  EIV+IL ++
Subjt:  TWAELTDKFLTKHHTLTRNADLREDIVSFGQKENKV-------------------------IEQFYNGLDCSSRMMLNIVANDSLLEKSVIEIVDILIKM

Query:  TDINDQ--GKVGRSLPKKQAPA
        ++ NDQ   +  R+  K+  PA
Subjt:  TDINDQ--GKVGRSLPKKQAPA

XP_022158408.1 uncharacterized protein LOC111024897, partial [Momordica charantia]2.0e-4045.05Show/hide
Query:  MQKYVAHAFNDLNSRISNSLPQAVQFKLKPVMLQMLQTMGQFEGLTNEDPYFHLESFIEIANAFQLPGVSKDALRLKLFPFSLRDNERTWLNALEPNSIT
        M++Y A AF + +S I N +P    F+LKP+M QMLQT+G F G  +EDP+ HL+SFI+IANAF+LPG++ DA  L LFPFSL+D  R  LNA    SIT
Subjt:  MQKYVAHAFNDLNSRISNSLPQAVQFKLKPVMLQMLQTMGQFEGLTNEDPYFHLESFIEIANAFQLPGVSKDALRLKLFPFSLRDNERTWLNALEPNSIT

Query:  TWAELTDKFLTKHHTLTRNADLREDIVSFGQKENK-------------------------VIEQFYNGLDCSSRMMLNIVANDSLLEKSVIEIVDILIKM
        TW  L +KFLTK    TR+AD+RE+I+SF Q + +                          IE F+ GLD  ++MMLN  AN +  +K+  EIVDIL  +
Subjt:  TWAELTDKFLTKHHTLTRNADLREDIVSFGQKENK-------------------------VIEQFYNGLDCSSRMMLNIVANDSLLEKSVIEIVDILIKM

Query:  TDINDQ--GKVGRSLPKKQAPA
           N+    +  R+ PKKQ PA
Subjt:  TDINDQ--GKVGRSLPKKQAPA

XP_022158836.1 uncharacterized protein LOC111025302 [Momordica charantia]5.8e-7769.2Show/hide
Query:  MQKYVAHAFNDLNSRISNSLPQAVQFKLKPVMLQMLQTMGQFEGLTNEDPYFHLESFIEIANAFQLPGVSKDALRLKLFPFSLRDNERTWLNALEPNSIT
        M+ YV HAF++LNS I+N LPQA QF+LKPVM Q+LQTMGQF GLTNEDPY HL+SFIEIANAFQLPG S+DALRLK+FPFSLRD  RTW+NALEPNSI 
Subjt:  MQKYVAHAFNDLNSRISNSLPQAVQFKLKPVMLQMLQTMGQFEGLTNEDPYFHLESFIEIANAFQLPGVSKDALRLKLFPFSLRDNERTWLNALEPNSIT

Query:  TWAELTDKFLTKHHTLTRNADLREDIVSFGQKENKV-------------------------IEQFYNGLDCSSRMMLNIVANDSLLEKSVIEIVDILIKM
        TWAELTDKFL K+HTLT+NADLREDIVSF QKEN+                          IEQFY GLD SS+MMLN +AN SLLEKSV EIVD+L KM
Subjt:  TWAELTDKFLTKHHTLTRNADLREDIVSFGQKENKV-------------------------IEQFYNGLDCSSRMMLNIVANDSLLEKSVIEIVDILIKM

Query:  TDINDQGKVGRSLPKKQAPAEMFE
        TDINDQG++GRSLPKKQ    +FE
Subjt:  TDINDQGKVGRSLPKKQAPAEMFE

XP_022159127.1 uncharacterized protein LOC111025557 [Momordica charantia]1.2e-5363.44Show/hide
Query:  MGQFEGLTNEDPYFHLESFIEIANAFQLPGVSKDALRLKLFPFSLRDNERTWLNALEPNSITTWAELTDKFLTKHHTLTRNADLREDIVSFGQKENKV--
        M QF G TNEDPY HL+SFI+IANAFQLPGVS+DALRLK+FPFSLRD   TW+N LE N ITTWAELTDKFL K+HTLTRNADL+EDIVSF Q+E++   
Subjt:  MGQFEGLTNEDPYFHLESFIEIANAFQLPGVSKDALRLKLFPFSLRDNERTWLNALEPNSITTWAELTDKFLTKHHTLTRNADLREDIVSFGQKENKV--

Query:  -----------------------IEQFYNGLDCSSRMMLNIVANDSLLEKSVIEIVDILIKMTDINDQGKVGRSLPKKQAPAEMFE
                               I+QFY GLD   RMM +  AN SLLEKSV EI+DIL KM DINDQ ++GRSLPKKQA A +FE
Subjt:  -----------------------IEQFYNGLDCSSRMMLNIVANDSLLEKSVIEIVDILIKMTDINDQGKVGRSLPKKQAPAEMFE

XP_022159235.1 uncharacterized protein LOC111025653 [Momordica charantia]8.0e-4244.59Show/hide
Query:  MQKYVAHAFNDLNSRISNSLPQAVQFKLKPVMLQMLQTMGQFEGLTNEDPYFHLESFIEIANAFQLPGVSKDALRLKLFPFSLRDNERTWLNALEPNSIT
        M+ Y A    DLNS + NS P   +F+ KP+MLQML  +GQF GL +EDP  HL+SFI++AN F+LPG+S DALRL LFPFS+      WLNA   ++IT
Subjt:  MQKYVAHAFNDLNSRISNSLPQAVQFKLKPVMLQMLQTMGQFEGLTNEDPYFHLESFIEIANAFQLPGVSKDALRLKLFPFSLRDNERTWLNALEPNSIT

Query:  TWAELTDKFLTKHHTLTRNADLREDIVSFGQKENKV-------------------------IEQFYNGLDCSSRMMLNIVANDSLLEKSVIEIVDILIKM
        TW+++ DKFL K+   TRNAD+RE+I+SF QKEN+                          IE F+ G D  ++MMLN  AN     KS  EIV+IL ++
Subjt:  TWAELTDKFLTKHHTLTRNADLREDIVSFGQKENKV-------------------------IEQFYNGLDCSSRMMLNIVANDSLLEKSVIEIVDILIKM

Query:  TDINDQ--GKVGRSLPKKQAPA
        ++ N Q   +  R+  K+  PA
Subjt:  TDINDQ--GKVGRSLPKKQAPA

TrEMBL top hitse value%identityAlignment
A0A6J1DSZ5 uncharacterized protein LOC1110241071.1e-4145.05Show/hide
Query:  MQKYVAHAFNDLNSRISNSLPQAVQFKLKPVMLQMLQTMGQFEGLTNEDPYFHLESFIEIANAFQLPGVSKDALRLKLFPFSLRDNERTWLNALEPNSIT
        M+ Y A    DLNS + N LP   QF+ KP+MLQML  + QF GL +EDP  HL+SFI++AN  +LPG+S DALRL LFPFSL      WLNA    +IT
Subjt:  MQKYVAHAFNDLNSRISNSLPQAVQFKLKPVMLQMLQTMGQFEGLTNEDPYFHLESFIEIANAFQLPGVSKDALRLKLFPFSLRDNERTWLNALEPNSIT

Query:  TWAELTDKFLTKHHTLTRNADLREDIVSFGQKENKV-------------------------IEQFYNGLDCSSRMMLNIVANDSLLEKSVIEIVDILIKM
        TW+++ DKFL K+   TRNAD+RE+I+SF QKEN+                          IE F+ G D  ++MMLN  AN     KS  EIV+IL ++
Subjt:  TWAELTDKFLTKHHTLTRNADLREDIVSFGQKENKV-------------------------IEQFYNGLDCSSRMMLNIVANDSLLEKSVIEIVDILIKM

Query:  TDINDQ--GKVGRSLPKKQAPA
        ++ NDQ   +  R+  K+  PA
Subjt:  TDINDQ--GKVGRSLPKKQAPA

A0A6J1DW02 uncharacterized protein LOC1110248979.5e-4145.05Show/hide
Query:  MQKYVAHAFNDLNSRISNSLPQAVQFKLKPVMLQMLQTMGQFEGLTNEDPYFHLESFIEIANAFQLPGVSKDALRLKLFPFSLRDNERTWLNALEPNSIT
        M++Y A AF + +S I N +P    F+LKP+M QMLQT+G F G  +EDP+ HL+SFI+IANAF+LPG++ DA  L LFPFSL+D  R  LNA    SIT
Subjt:  MQKYVAHAFNDLNSRISNSLPQAVQFKLKPVMLQMLQTMGQFEGLTNEDPYFHLESFIEIANAFQLPGVSKDALRLKLFPFSLRDNERTWLNALEPNSIT

Query:  TWAELTDKFLTKHHTLTRNADLREDIVSFGQKENK-------------------------VIEQFYNGLDCSSRMMLNIVANDSLLEKSVIEIVDILIKM
        TW  L +KFLTK    TR+AD+RE+I+SF Q + +                          IE F+ GLD  ++MMLN  AN +  +K+  EIVDIL  +
Subjt:  TWAELTDKFLTKHHTLTRNADLREDIVSFGQKENK-------------------------VIEQFYNGLDCSSRMMLNIVANDSLLEKSVIEIVDILIKM

Query:  TDINDQ--GKVGRSLPKKQAPA
           N+    +  R+ PKKQ PA
Subjt:  TDINDQ--GKVGRSLPKKQAPA

A0A6J1DY39 uncharacterized protein LOC1110256533.9e-4244.59Show/hide
Query:  MQKYVAHAFNDLNSRISNSLPQAVQFKLKPVMLQMLQTMGQFEGLTNEDPYFHLESFIEIANAFQLPGVSKDALRLKLFPFSLRDNERTWLNALEPNSIT
        M+ Y A    DLNS + NS P   +F+ KP+MLQML  +GQF GL +EDP  HL+SFI++AN F+LPG+S DALRL LFPFS+      WLNA   ++IT
Subjt:  MQKYVAHAFNDLNSRISNSLPQAVQFKLKPVMLQMLQTMGQFEGLTNEDPYFHLESFIEIANAFQLPGVSKDALRLKLFPFSLRDNERTWLNALEPNSIT

Query:  TWAELTDKFLTKHHTLTRNADLREDIVSFGQKENKV-------------------------IEQFYNGLDCSSRMMLNIVANDSLLEKSVIEIVDILIKM
        TW+++ DKFL K+   TRNAD+RE+I+SF QKEN+                          IE F+ G D  ++MMLN  AN     KS  EIV+IL ++
Subjt:  TWAELTDKFLTKHHTLTRNADLREDIVSFGQKENKV-------------------------IEQFYNGLDCSSRMMLNIVANDSLLEKSVIEIVDILIKM

Query:  TDINDQ--GKVGRSLPKKQAPA
        ++ N Q   +  R+  K+  PA
Subjt:  TDINDQ--GKVGRSLPKKQAPA

A0A6J1DYY9 uncharacterized protein LOC1110255574.4e-5463.98Show/hide
Query:  MGQFEGLTNEDPYFHLESFIEIANAFQLPGVSKDALRLKLFPFSLRDNERTWLNALEPNSITTWAELTDKFLTKHHTLTRNADLREDIVSFGQKENKV--
        M QF G TNEDPY HL+SFI+IANAFQLPGVS+DALRLK+FPFSLRD   TWLN LE N ITTWAELTDKFL K+HTLTRNADL+EDIVSF Q+E++   
Subjt:  MGQFEGLTNEDPYFHLESFIEIANAFQLPGVSKDALRLKLFPFSLRDNERTWLNALEPNSITTWAELTDKFLTKHHTLTRNADLREDIVSFGQKENKV--

Query:  -----------------------IEQFYNGLDCSSRMMLNIVANDSLLEKSVIEIVDILIKMTDINDQGKVGRSLPKKQAPAEMFE
                               I+QFY GLD   RMM +  AN SLLEKSV EI+DIL KM DINDQ ++GRSLPKKQA A +FE
Subjt:  -----------------------IEQFYNGLDCSSRMMLNIVANDSLLEKSVIEIVDILIKMTDINDQGKVGRSLPKKQAPAEMFE

A0A6J1E251 uncharacterized protein LOC1110253022.8e-7769.2Show/hide
Query:  MQKYVAHAFNDLNSRISNSLPQAVQFKLKPVMLQMLQTMGQFEGLTNEDPYFHLESFIEIANAFQLPGVSKDALRLKLFPFSLRDNERTWLNALEPNSIT
        M+ YV HAF++LNS I+N LPQA QF+LKPVM Q+LQTMGQF GLTNEDPY HL+SFIEIANAFQLPG S+DALRLK+FPFSLRD  RTW+NALEPNSI 
Subjt:  MQKYVAHAFNDLNSRISNSLPQAVQFKLKPVMLQMLQTMGQFEGLTNEDPYFHLESFIEIANAFQLPGVSKDALRLKLFPFSLRDNERTWLNALEPNSIT

Query:  TWAELTDKFLTKHHTLTRNADLREDIVSFGQKENKV-------------------------IEQFYNGLDCSSRMMLNIVANDSLLEKSVIEIVDILIKM
        TWAELTDKFL K+HTLT+NADLREDIVSF QKEN+                          IEQFY GLD SS+MMLN +AN SLLEKSV EIVD+L KM
Subjt:  TWAELTDKFLTKHHTLTRNADLREDIVSFGQKENKV-------------------------IEQFYNGLDCSSRMMLNIVANDSLLEKSVIEIVDILIKM

Query:  TDINDQGKVGRSLPKKQAPAEMFE
        TDINDQG++GRSLPKKQ    +FE
Subjt:  TDINDQGKVGRSLPKKQAPAEMFE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGAAATATGTCGCTCATGCGTTCAATGACTTAAATTCAAGGATAAGTAATTCTTTACCCCAAGCCGTACAGTTCAAGCTCAAGCCAGTCATGTTACAGATG
TTGCAGACGATGGGCCAGTTTGAAGGATTGACTAACGAAGATCCCTATTTCCATCTCGAATCTTTTATTGAAATAGCTAATGCATTTCAACTTCCTGGTGTCTCT
AAAGATGCACTAAGACTAAAATTGTTTCCTTTTTCTCTCAGGGACAATGAAAGGACTTGGCTAAACGCGTTAGAACCAAATTCTATCACTACATGGGCGGAACTG
ACGGATAAATTTTTGACAAAGCACCATACTTTGACTAGGAACGCAGATCTTCGAGAAGACATTGTGTCTTTTGGACAAAAGGAGAACAAAGTAATAGAACAGTTC
TATAATGGATTGGATTGTTCATCAAGAATGATGTTGAACATCGTAGCCAATGACTCATTGTTAGAGAAGTCGGTTATTGAGATCGTTGATATTTTGATCAAGATG
ACAGACATTAATGACCAAGGAAAAGTAGGAAGGTCATTACCAAAGAAGCAAGCACCAGCCGAAATGTTTGAGTCAATGCAGCAGCTTCAATGCAAGCTCAGATAG
mRNA sequenceShow/hide mRNA sequence
ATGCAGAAATATGTCGCTCATGCGTTCAATGACTTAAATTCAAGGATAAGTAATTCTTTACCCCAAGCCGTACAGTTCAAGCTCAAGCCAGTCATGTTACAGATG
TTGCAGACGATGGGCCAGTTTGAAGGATTGACTAACGAAGATCCCTATTTCCATCTCGAATCTTTTATTGAAATAGCTAATGCATTTCAACTTCCTGGTGTCTCT
AAAGATGCACTAAGACTAAAATTGTTTCCTTTTTCTCTCAGGGACAATGAAAGGACTTGGCTAAACGCGTTAGAACCAAATTCTATCACTACATGGGCGGAACTG
ACGGATAAATTTTTGACAAAGCACCATACTTTGACTAGGAACGCAGATCTTCGAGAAGACATTGTGTCTTTTGGACAAAAGGAGAACAAAGTAATAGAACAGTTC
TATAATGGATTGGATTGTTCATCAAGAATGATGTTGAACATCGTAGCCAATGACTCATTGTTAGAGAAGTCGGTTATTGAGATCGTTGATATTTTGATCAAGATG
ACAGACATTAATGACCAAGGAAAAGTAGGAAGGTCATTACCAAAGAAGCAAGCACCAGCCGAAATGTTTGAGTCAATGCAGCAGCTTCAATGCAAGCTCAGATAG
Protein sequenceShow/hide protein sequence
MQKYVAHAFNDLNSRISNSLPQAVQFKLKPVMLQMLQTMGQFEGLTNEDPYFHLESFIEIANAFQLPGVSKDALRLKLFPFSLRDNERTWLNALEPNSITTWAEL
TDKFLTKHHTLTRNADLREDIVSFGQKENKVIEQFYNGLDCSSRMMLNIVANDSLLEKSVIEIVDILIKMTDINDQGKVGRSLPKKQAPAEMFESMQQLQCKLR