CuGenDBv2

Gene ID	Moc04g14540
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	60S ribosomal protein L3-like protein
Genome location	chr4:11086125..11088945
RNA-Seq Expression	Moc04g14540
Synteny	Moc04g14540
Gene Ontology terms	GO:0000027 - ribosomal large subunit assembly (biological process) GO:0006412 - translation (biological process) GO:0022625 - cytosolic large ribosomal subunit (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR000597 - Ribosomal protein L3 IPR009000 - Translation protein, beta-barrel domain superfamily IPR045077 - Ribosomal protein L3, archaeal/eukaryotic type

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6601630.1 60S ribosomal protein L3-2, partial [Cucurbita argyrosperma subsp. sororia]

6.5e-38

67.38

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Query:  KAGMTHIVREVEKPGSKLHEKETCEAVTIIETPPLVVIGIVGYVKTPRGLRSLKTVWAQHLSEEM---------------------------GEKDIEAQ
        KAGMTHIVREVEKPGSKLH+KETCEAVTIIETPP+VV+G+VGYVKTPRGLRSLKTVWAQHLSEE+                           G+KDI AQ
Subjt:  KAGMTHIVREVEKPGSKLHEKETCEAVTIIETPPLVVIGIVGYVKTPRGLRSLKTVWAQHLSEEM---------------------------GEKDIEAQ

Query:  LEKLKKYSTEILVLAHSQNKDIFSDKENGLKQKKAHLMEIQ
        LEKLKKY T I VLAHSQ +     K  GLKQKKAHLMEIQ
Subjt:  LEKLKKYSTEILVLAHSQNKDIFSDKENGLKQKKAHLMEIQ

XP_022149028.1 ribosomal protein L3-like [Momordica charantia]

2.2e-54

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Query:  MGEKDIEAQLEKLKKYSTEILVLAHSQNKDIFSDKENGLKQKKAHLMEIQARATKGSPAWASESSMYWSLASSQSIIYCCSSRTKWLSCSAMTEFDRRRH
        MGEKDIEAQLEKLKKYSTEILVLAHSQNKDIFSDKENGLKQKKAHLMEIQ       P  A            + I     ++ K         F +RRH
Subjt:  MGEKDIEAQLEKLKKYSTEILVLAHSQNKDIFSDKENGLKQKKAHLMEIQARATKGSPAWASESSMYWSLASSQSIIYCCSSRTKWLSCSAMTEFDRRRH

Query:  KSDCLCAICVLKRRRKEREEIARITKDQTGAGYNQEESLRLESPGSLDSSSNADDSVDNELDVEEETRDEENATV
        KSDCLCAICVLKRRRKEREEIARITKDQTGAGYNQEESLRLESPGSLDSSSNADDSVDNELDVEEETRDEENATV
Subjt:  KSDCLCAICVLKRRRKEREEIARITKDQTGAGYNQEESLRLESPGSLDSSSNADDSVDNELDVEEETRDEENATV

XP_022151895.1 60S ribosomal protein L3-2 [Momordica charantia]

5.9e-39

68.09

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Query:  KAGMTHIVREVEKPGSKLHEKETCEAVTIIETPPLVVIGIVGYVKTPRGLRSLKTVWAQHLSEEM---------------------------GEKDIEAQ
        KAGMTHIVREVEKPGSKLH+KETCEAVTIIETPP++VIGIVGYVKTPRGLRSLKTVWAQHLSEE+                           G+KDI+AQ
Subjt:  KAGMTHIVREVEKPGSKLHEKETCEAVTIIETPPLVVIGIVGYVKTPRGLRSLKTVWAQHLSEEM---------------------------GEKDIEAQ

Query:  LEKLKKYSTEILVLAHSQNKDIFSDKENGLKQKKAHLMEIQ
         EKLKKYSTEI VLAHSQ +     K  GLKQKKAHLMEI+
Subjt:  LEKLKKYSTEILVLAHSQNKDIFSDKENGLKQKKAHLMEIQ

XP_022998082.1 60S ribosomal protein L3-2 [Cucurbita maxima]

6.5e-38

67.38

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Query:  KAGMTHIVREVEKPGSKLHEKETCEAVTIIETPPLVVIGIVGYVKTPRGLRSLKTVWAQHLSEEM---------------------------GEKDIEAQ
        KAGMTHIVREVEKPGSKLH+KETCEAVTIIETPP+VV+G+VGYVKTPRGLRSLKTVWAQHLSEE+                           G+KDI AQ
Subjt:  KAGMTHIVREVEKPGSKLHEKETCEAVTIIETPPLVVIGIVGYVKTPRGLRSLKTVWAQHLSEEM---------------------------GEKDIEAQ

Query:  LEKLKKYSTEILVLAHSQNKDIFSDKENGLKQKKAHLMEIQ
         EKLKKYST I VLAHSQ +     K  GLKQKKAHLMEIQ
Subjt:  LEKLKKYSTEILVLAHSQNKDIFSDKENGLKQKKAHLMEIQ

XP_023547361.1 60S ribosomal protein L3-2 [Cucurbita pepo subsp. pepo]

6.5e-38

67.38

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Query:  KAGMTHIVREVEKPGSKLHEKETCEAVTIIETPPLVVIGIVGYVKTPRGLRSLKTVWAQHLSEEM---------------------------GEKDIEAQ
        KAGMTHIVREVEKPGSKLH+KETCEAVTIIETPP+VV+G+VGYVKTPRGLRSLKTVWAQHLSEE+                           G+KDI AQ
Subjt:  KAGMTHIVREVEKPGSKLHEKETCEAVTIIETPPLVVIGIVGYVKTPRGLRSLKTVWAQHLSEEM---------------------------GEKDIEAQ

Query:  LEKLKKYSTEILVLAHSQNKDIFSDKENGLKQKKAHLMEIQ
        LEKLKKY T I VLAHSQ +     K  GLKQKKAHLMEIQ
Subjt:  LEKLKKYSTEILVLAHSQNKDIFSDKENGLKQKKAHLMEIQ

TrEMBL top hits

e value

%identity

Alignment

A0A1S3VMA6 60S ribosomal protein L3

5.4e-38

65.96

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Query:  KAGMTHIVREVEKPGSKLHEKETCEAVTIIETPPLVVIGIVGYVKTPRGLRSLKTVWAQHLSEEM---------------------------GEKDIEAQ
        KAGMTHIVREVEKPGSKLH+KETCEAVTIIETPPLVV+G+VGYVKTPRGLR+L TVWAQHLSEE+                           G+KD+E+Q
Subjt:  KAGMTHIVREVEKPGSKLHEKETCEAVTIIETPPLVVIGIVGYVKTPRGLRSLKTVWAQHLSEEM---------------------------GEKDIEAQ

Query:  LEKLKKYSTEILVLAHSQNKDIFSDKENGLKQKKAHLMEIQ
        LEKLKKYST I VLAH+Q +     K  GLKQKKAHLMEIQ
Subjt:  LEKLKKYSTEILVLAHSQNKDIFSDKENGLKQKKAHLMEIQ

A0A6J1D5Q0 ribosomal protein L3-like

1.1e-54

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Query:  MGEKDIEAQLEKLKKYSTEILVLAHSQNKDIFSDKENGLKQKKAHLMEIQARATKGSPAWASESSMYWSLASSQSIIYCCSSRTKWLSCSAMTEFDRRRH
        MGEKDIEAQLEKLKKYSTEILVLAHSQNKDIFSDKENGLKQKKAHLMEIQ       P  A            + I     ++ K         F +RRH
Subjt:  MGEKDIEAQLEKLKKYSTEILVLAHSQNKDIFSDKENGLKQKKAHLMEIQARATKGSPAWASESSMYWSLASSQSIIYCCSSRTKWLSCSAMTEFDRRRH

Query:  KSDCLCAICVLKRRRKEREEIARITKDQTGAGYNQEESLRLESPGSLDSSSNADDSVDNELDVEEETRDEENATV
        KSDCLCAICVLKRRRKEREEIARITKDQTGAGYNQEESLRLESPGSLDSSSNADDSVDNELDVEEETRDEENATV
Subjt:  KSDCLCAICVLKRRRKEREEIARITKDQTGAGYNQEESLRLESPGSLDSSSNADDSVDNELDVEEETRDEENATV

A0A6J1DCG6 60S ribosomal protein L3-2

2.9e-39

68.09

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Query:  KAGMTHIVREVEKPGSKLHEKETCEAVTIIETPPLVVIGIVGYVKTPRGLRSLKTVWAQHLSEEM---------------------------GEKDIEAQ
        KAGMTHIVREVEKPGSKLH+KETCEAVTIIETPP++VIGIVGYVKTPRGLRSLKTVWAQHLSEE+                           G+KDI+AQ
Subjt:  KAGMTHIVREVEKPGSKLHEKETCEAVTIIETPPLVVIGIVGYVKTPRGLRSLKTVWAQHLSEEM---------------------------GEKDIEAQ

Query:  LEKLKKYSTEILVLAHSQNKDIFSDKENGLKQKKAHLMEIQ
         EKLKKYSTEI VLAHSQ +     K  GLKQKKAHLMEI+
Subjt:  LEKLKKYSTEILVLAHSQNKDIFSDKENGLKQKKAHLMEIQ

A0A6J1GYN6 60S ribosomal protein L3-2

4.1e-38

67.38

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Query:  KAGMTHIVREVEKPGSKLHEKETCEAVTIIETPPLVVIGIVGYVKTPRGLRSLKTVWAQHLSEEM---------------------------GEKDIEAQ
        KAGMTHIVREVEKPGSKLH+KETCEAVTIIETPP+VV+G+VGYVKTPRGLRSLKTVWAQHLSEE+                           G KDI AQ
Subjt:  KAGMTHIVREVEKPGSKLHEKETCEAVTIIETPPLVVIGIVGYVKTPRGLRSLKTVWAQHLSEEM---------------------------GEKDIEAQ

Query:  LEKLKKYSTEILVLAHSQNKDIFSDKENGLKQKKAHLMEIQ
        LEKLKKY T I VLAHSQ +     K  GLKQKKAHLMEIQ
Subjt:  LEKLKKYSTEILVLAHSQNKDIFSDKENGLKQKKAHLMEIQ

A0A6J1K6W3 60S ribosomal protein L3-2

3.2e-38

67.38

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Query:  KAGMTHIVREVEKPGSKLHEKETCEAVTIIETPPLVVIGIVGYVKTPRGLRSLKTVWAQHLSEEM---------------------------GEKDIEAQ
        KAGMTHIVREVEKPGSKLH+KETCEAVTIIETPP+VV+G+VGYVKTPRGLRSLKTVWAQHLSEE+                           G+KDI AQ
Subjt:  KAGMTHIVREVEKPGSKLHEKETCEAVTIIETPPLVVIGIVGYVKTPRGLRSLKTVWAQHLSEEM---------------------------GEKDIEAQ

Query:  LEKLKKYSTEILVLAHSQNKDIFSDKENGLKQKKAHLMEIQ
         EKLKKYST I VLAHSQ +     K  GLKQKKAHLMEIQ
Subjt:  LEKLKKYSTEILVLAHSQNKDIFSDKENGLKQKKAHLMEIQ

SwissProt top hits

e value

%identity

Alignment

P17094 60S ribosomal protein L3-1

1.2e-37

62.41

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Query:  KAGMTHIVREVEKPGSKLHEKETCEAVTIIETPPLVVIGIVGYVKTPRGLRSLKTVWAQHLSEEM---------------------------GEKDIEAQ
        KAGMTHIVREVEKPGSKLH+KETCEAVTIIETP +VV+G+V YVKTPRGLRSL TVWAQHLSEE+                           G+K I+AQ
Subjt:  KAGMTHIVREVEKPGSKLHEKETCEAVTIIETPPLVVIGIVGYVKTPRGLRSLKTVWAQHLSEEM---------------------------GEKDIEAQ

Query:  LEKLKKYSTEILVLAHSQNKDIFSDKENGLKQKKAHLMEIQ
        LEK+KKY+T I VLAH+Q +     K  GLKQKKAH+MEIQ
Subjt:  LEKLKKYSTEILVLAHSQNKDIFSDKENGLKQKKAHLMEIQ

P22738 60S ribosomal protein L3-2

6.8e-38

62.41

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Query:  KAGMTHIVREVEKPGSKLHEKETCEAVTIIETPPLVVIGIVGYVKTPRGLRSLKTVWAQHLSEEM---------------------------GEKDIEAQ
        KAGMTHIVR+VEKPGSKLH+KETCEAVTIIETPP+VV+G+VGYVKTPRGLRSL TVWAQHLSEE+                           G+KDI++Q
Subjt:  KAGMTHIVREVEKPGSKLHEKETCEAVTIIETPPLVVIGIVGYVKTPRGLRSLKTVWAQHLSEEM---------------------------GEKDIEAQ

Query:  LEKLKKYSTEILVLAHSQNKDIFSDKENGLKQKKAHLMEIQ
        LEK+KKY + I VLAH+Q +     K  GLKQKKAHL EIQ
Subjt:  LEKLKKYSTEILVLAHSQNKDIFSDKENGLKQKKAHLMEIQ

P35684 60S ribosomal protein L3

3.4e-37

60.28

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Query:  KAGMTHIVREVEKPGSKLHEKETCEAVTIIETPPLVVIGIVGYVKTPRGLRSLKTVWAQHLSEEM---------------------------GEKDIEAQ
        KAGMTHIVREVEKPGSKLH+KETCEAVTIIETPPLV++G+V YVKTPRGLRSL +VWAQHLSEE+                           G+K+I+ Q
Subjt:  KAGMTHIVREVEKPGSKLHEKETCEAVTIIETPPLVVIGIVGYVKTPRGLRSLKTVWAQHLSEEM---------------------------GEKDIEAQ

Query:  LEKLKKYSTEILVLAHSQNKDIFSDKENGLKQKKAHLMEIQ
        LEK+KKY++ + V+AH+Q +     K  GLKQKKAHLMEIQ
Subjt:  LEKLKKYSTEILVLAHSQNKDIFSDKENGLKQKKAHLMEIQ

P36584 60S ribosomal protein L3-B

1.5e-29

49.36

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Query:  KAGMTHIVREVEKPGSKLHEKETCEAVTIIETPPLVVIGIVGYVKTPRGLRSLKTVWAQHLSEEM-------------------------GEKDIEAQLE
        KAGMTHIVR++++PGSK+H++E  EAVTIIETPP+VV+G+VGYV+TPRGLRSL TVWA+HLSEE+                           + I  +LE
Subjt:  KAGMTHIVREVEKPGSKLHEKETCEAVTIIETPPLVVIGIVGYVKTPRGLRSLKTVWAQHLSEEM-------------------------GEKDIEAQLE

Query:  KLKKYSTEILVLAHSQNKDIFSDKENGLKQKKAHLMEIQARATKGSPA----WASE
        ++KKY + + VLAH+Q       ++  L QKKAHLMEIQ     GS A    WA E
Subjt:  KLKKYSTEILVLAHSQNKDIFSDKENGLKQKKAHLMEIQARATKGSPA----WASE

P40372 60S ribosomal protein L3-A

2.0e-29

48.72

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Query:  KAGMTHIVREVEKPGSKLHEKETCEAVTIIETPPLVVIGIVGYVKTPRGLRSLKTVWAQHLSEEM-------------------------GEKDIEAQLE
        KAGMTHIVR++++PGSK+H++E  EAVT+IETPP+VV+G+VGYV+TPRGLRSL TVWA+HLSEE+                           + I  +LE
Subjt:  KAGMTHIVREVEKPGSKLHEKETCEAVTIIETPPLVVIGIVGYVKTPRGLRSLKTVWAQHLSEEM-------------------------GEKDIEAQLE

Query:  KLKKYSTEILVLAHSQNKDIFSDKENGLKQKKAHLMEIQARATKGSPA----WASE
        ++KKY + + VLAH+Q       ++  L QKKAHLMEIQ     GS A    WA E
Subjt:  KLKKYSTEILVLAHSQNKDIFSDKENGLKQKKAHLMEIQARATKGSPA----WASE

Arabidopsis top hits

e value

%identity

Alignment

AT1G43170.1 ribosomal protein 1

8.2e-39

62.41

Show/hide

Query:  KAGMTHIVREVEKPGSKLHEKETCEAVTIIETPPLVVIGIVGYVKTPRGLRSLKTVWAQHLSEEM---------------------------GEKDIEAQ
        KAGMTHIVREVEKPGSKLH+KETCEAVTIIETP +VV+G+V YVKTPRGLRSL TVWAQHLSEE+                           G+K I+AQ
Subjt:  KAGMTHIVREVEKPGSKLHEKETCEAVTIIETPPLVVIGIVGYVKTPRGLRSLKTVWAQHLSEEM---------------------------GEKDIEAQ

Query:  LEKLKKYSTEILVLAHSQNKDIFSDKENGLKQKKAHLMEIQ
        LEK+KKY+T I VLAH+Q +     K  GLKQKKAH+MEIQ
Subjt:  LEKLKKYSTEILVLAHSQNKDIFSDKENGLKQKKAHLMEIQ

AT1G43170.2 ribosomal protein 1

8.2e-39

62.41

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Query:  KAGMTHIVREVEKPGSKLHEKETCEAVTIIETPPLVVIGIVGYVKTPRGLRSLKTVWAQHLSEEM---------------------------GEKDIEAQ
        KAGMTHIVREVEKPGSKLH+KETCEAVTIIETP +VV+G+V YVKTPRGLRSL TVWAQHLSEE+                           G+K I+AQ
Subjt:  KAGMTHIVREVEKPGSKLHEKETCEAVTIIETPPLVVIGIVGYVKTPRGLRSLKTVWAQHLSEEM---------------------------GEKDIEAQ

Query:  LEKLKKYSTEILVLAHSQNKDIFSDKENGLKQKKAHLMEIQ
        LEK+KKY+T I VLAH+Q +     K  GLKQKKAH+MEIQ
Subjt:  LEKLKKYSTEILVLAHSQNKDIFSDKENGLKQKKAHLMEIQ

AT1G43170.3 ribosomal protein 1

8.2e-39

62.41

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Query:  KAGMTHIVREVEKPGSKLHEKETCEAVTIIETPPLVVIGIVGYVKTPRGLRSLKTVWAQHLSEEM---------------------------GEKDIEAQ
        KAGMTHIVREVEKPGSKLH+KETCEAVTIIETP +VV+G+V YVKTPRGLRSL TVWAQHLSEE+                           G+K I+AQ
Subjt:  KAGMTHIVREVEKPGSKLHEKETCEAVTIIETPPLVVIGIVGYVKTPRGLRSLKTVWAQHLSEEM---------------------------GEKDIEAQ

Query:  LEKLKKYSTEILVLAHSQNKDIFSDKENGLKQKKAHLMEIQ
        LEK+KKY+T I VLAH+Q +     K  GLKQKKAH+MEIQ
Subjt:  LEKLKKYSTEILVLAHSQNKDIFSDKENGLKQKKAHLMEIQ

AT1G43170.5 ribosomal protein 1

8.2e-39

62.41

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Query:  KAGMTHIVREVEKPGSKLHEKETCEAVTIIETPPLVVIGIVGYVKTPRGLRSLKTVWAQHLSEEM---------------------------GEKDIEAQ
        KAGMTHIVREVEKPGSKLH+KETCEAVTIIETP +VV+G+V YVKTPRGLRSL TVWAQHLSEE+                           G+K I+AQ
Subjt:  KAGMTHIVREVEKPGSKLHEKETCEAVTIIETPPLVVIGIVGYVKTPRGLRSLKTVWAQHLSEEM---------------------------GEKDIEAQ

Query:  LEKLKKYSTEILVLAHSQNKDIFSDKENGLKQKKAHLMEIQ
        LEK+KKY+T I VLAH+Q +     K  GLKQKKAH+MEIQ
Subjt:  LEKLKKYSTEILVLAHSQNKDIFSDKENGLKQKKAHLMEIQ

AT1G61580.1 R-protein L3 B

4.8e-39

62.41

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Query:  KAGMTHIVREVEKPGSKLHEKETCEAVTIIETPPLVVIGIVGYVKTPRGLRSLKTVWAQHLSEEM---------------------------GEKDIEAQ
        KAGMTHIVR+VEKPGSKLH+KETCEAVTIIETPP+VV+G+VGYVKTPRGLRSL TVWAQHLSEE+                           G+KDI++Q
Subjt:  KAGMTHIVREVEKPGSKLHEKETCEAVTIIETPPLVVIGIVGYVKTPRGLRSLKTVWAQHLSEEM---------------------------GEKDIEAQ

Query:  LEKLKKYSTEILVLAHSQNKDIFSDKENGLKQKKAHLMEIQ
        LEK+KKY + I VLAH+Q +     K  GLKQKKAHL EIQ
Subjt:  LEKLKKYSTEILVLAHSQNKDIFSDKENGLKQKKAHLMEIQ

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCTCTCTGGGTTTTCTTCCCAGAAAGAGAGCTTCTTCCCATAGAGGAAAAGGCTGGGATGACCCATATTGTTAGAGAAGTTGAAAAGCCTGGATCAAAGCTACACGA
GAAAGAAACATGTGAAGCTGTAACAATTATAGAAACGCCACCTTTGGTTGTTATTGGTATTGTTGGCTATGTCAAAACGCCACGGGGCCTGCGTTCCTTGAAAACTGTCT
GGGCCCAGCATTTGAGCGAGGAGATGGGGGAGAAGGATATTGAGGCACAGTTAGAGAAATTGAAGAAATACAGCACTGAGATTCTTGTTCTGGCCCATTCACAGAATAAG
GACATATTTTCAGATAAGGAAAATGGACTGAAGCAGAAGAAAGCTCACTTGATGGAGATTCAGGCAAGGGCTACAAAGGGGTCCCCCGCGTGGGCTTCGGAAAGTAGCAT
GTACTGGAGCTTGGCATCCAGCCAGAGTATCATTTACTGTTGCTCGAGCAGGACAAAATGGTTATCCTGCTCTGCCATGACCGAATTTGATAGAAGGCGCCACAAATCTG
ATTGTTTATGTGCAATATGTGTTTTAAAGCGCCGTAGAAAGGAGCGCGAAGAGATTGCTAGAATTACTAAAGACCAAACTGGAGCTGGCTATAACCAAGAGGAATCCTTG
CGTTTGGAAAGTCCTGGCAGCTTGGACTCATCATCAAATGCAGATGATTCAGTAGACAATGAATTAGATGTTGAGGAAGAAACAAGAGACGAGGAGAATGCAACAGTTTA
G

mRNA sequence

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Protein sequence

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MALWVFFPERELLPIEEKAGMTHIVREVEKPGSKLHEKETCEAVTIIETPPLVVIGIVGYVKTPRGLRSLKTVWAQHLSEEMGEKDIEAQLEKLKKYSTEILVLAHSQNK
DIFSDKENGLKQKKAHLMEIQARATKGSPAWASESSMYWSLASSQSIIYCCSSRTKWLSCSAMTEFDRRRHKSDCLCAICVLKRRRKEREEIARITKDQTGAGYNQEESL
RLESPGSLDSSSNADDSVDNELDVEEETRDEENATV

Moc04g14540 (gene) of Bitter gourd (OHB3-1) v2 genome