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Moc04g15280 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc04g15280
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionReverse transcriptase
Genome locationchr4:11550308..11553821
RNA-Seq ExpressionMoc04g15280
SyntenyMoc04g15280
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022151603.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111019515 [Momordica charantia]1.2e-2292.06Show/hide
Query:  EIEEELDKIAEGPEDMANPIEKIQK-ECKSLLPSIVEPPTLEQKPLPSHLKYAYLGDNDTLPV
        EIEEELDKIAEGPED+ +P+EKIQK ECKSLLPSIVEPPTLEQKPLPSHLKYAYLGDNDTLPV
Subjt:  EIEEELDKIAEGPEDMANPIEKIQK-ECKSLLPSIVEPPTLEQKPLPSHLKYAYLGDNDTLPV

XP_022159336.1 uncharacterized protein LOC111025754, partial [Momordica charantia]4.4e-1273.08Show/hide
Query:  MKLPGDFEECSAINSLNPIMFDEFYDLLVTEIEEELDKIAEGPEDMANPIEK
        MKLPGDFEECSAI +LNP+MFDEFYDLLV EIE+E DKIAEGP+++    +K
Subjt:  MKLPGDFEECSAINSLNPIMFDEFYDLLVTEIEEELDKIAEGPEDMANPIEK

XP_030502183.1 uncharacterized protein LOC115717351 [Cannabis sativa]4.6e-0938.94Show/hide
Query:  MKLPGDFEECSAINSLNPIMFDEFY-----DLLVTEIEEELDKIAEGPEDMA------NPIEKIQKECKSL----------LPSIVEPPTLEQKPLPSHL
        M+ P + EECS I+ ++ I+ ++F+     D       +EL+ ++E  ++         P+ K +K  +SL           PS  EPP LE KPLPSHL
Subjt:  MKLPGDFEECSAINSLNPIMFDEFY-----DLLVTEIEEELDKIAEGPEDMA------NPIEKIQKECKSL----------LPSIVEPPTLEQKPLPSHL

Query:  KYAYLGDNDTLPV
        KYAYLG+NDTLPV
Subjt:  KYAYLGDNDTLPV

XP_030504461.1 uncharacterized protein LOC115719521 [Cannabis sativa]7.0e-1038.94Show/hide
Query:  MKLPGDFEECSAINSLNPIMFDEFY-----DLLVTEIEEELDKIAEGPEDMANPIEKIQ----------------KECKSLLPSIVEPPTLEQKPLPSHL
        M+ P + EECS ++ ++ I+ + F+     D  V    E+L+ ++E  E   + +E +Q                   K L PSI EPP LE KPLPSHL
Subjt:  MKLPGDFEECSAINSLNPIMFDEFY-----DLLVTEIEEELDKIAEGPEDMANPIEKIQ----------------KECKSLLPSIVEPPTLEQKPLPSHL

Query:  KYAYLGDNDTLPV
        KYAYLG+N+TLPV
Subjt:  KYAYLGDNDTLPV

XP_030505517.1 uncharacterized protein LOC115720508 [Cannabis sativa]7.8e-0939.82Show/hide
Query:  MKLPGDFEECSAINSLNPIMFDEFY-----DLLVTEIEEELDKIAEGPEDMA------NPIEKIQKECKSL----------LPSIVEPPTLEQKPLPSHL
        M+   + EECS I+ ++ I+ + F+     D       +EL+ ++E  ++         PI K +K  +SL           PSI EPP LE KPLPSHL
Subjt:  MKLPGDFEECSAINSLNPIMFDEFY-----DLLVTEIEEELDKIAEGPEDMA------NPIEKIQKECKSL----------LPSIVEPPTLEQKPLPSHL

Query:  KYAYLGDNDTLPV
        KYAYLG+NDTLPV
Subjt:  KYAYLGDNDTLPV

TrEMBL top hitse value%identityAlignment
A0A2G9GK35 Reverse transcriptase1.2e-0739.09Show/hide
Query:  MKLPGDFEECSAINSLNPIMFDE-------------FYDLLVTEIEEELDKIA---EGPEDMANPIEKIQK--ECKSLLPSIVEPPTLEQKPLPSHLKYA
        MK P + +EC A+N  + +  +E               DLL  E EE+ + +          +  +E +++    K L PSI EPPTLE KPLPSHL YA
Subjt:  MKLPGDFEECSAINSLNPIMFDE-------------FYDLLVTEIEEELDKIA---EGPEDMANPIEKIQK--ECKSLLPSIVEPPTLEQKPLPSHLKYA

Query:  YLGDNDTLPV
        YLG++DTLPV
Subjt:  YLGDNDTLPV

A0A2G9HYA0 Reverse transcriptase1.6e-0739.09Show/hide
Query:  MKLPGDFEECSAINSLNPIMFDE-------------FYDLLVTEIEEELD--KIAEGPEDM-ANPIEKIQK--ECKSLLPSIVEPPTLEQKPLPSHLKYA
        MK P + +EC A++  + +  +E               DLL  E EE+L+  K  +  + + +  +E +++    K L PSI +PPTLE KPLPSHL YA
Subjt:  MKLPGDFEECSAINSLNPIMFDE-------------FYDLLVTEIEEELD--KIAEGPEDM-ANPIEKIQK--ECKSLLPSIVEPPTLEQKPLPSHLKYA

Query:  YLGDNDTLPV
        YLG++DTLPV
Subjt:  YLGDNDTLPV

A0A6J1DCL7 LOW QUALITY PROTEIN: uncharacterized protein LOC1110195156.0e-2392.06Show/hide
Query:  EIEEELDKIAEGPEDMANPIEKIQK-ECKSLLPSIVEPPTLEQKPLPSHLKYAYLGDNDTLPV
        EIEEELDKIAEGPED+ +P+EKIQK ECKSLLPSIVEPPTLEQKPLPSHLKYAYLGDNDTLPV
Subjt:  EIEEELDKIAEGPEDMANPIEKIQK-ECKSLLPSIVEPPTLEQKPLPSHLKYAYLGDNDTLPV

A0A6J1E110 uncharacterized protein LOC1110254245.4e-0896.77Show/hide
Query:  PSIVEPPTLEQKPLPSHLKYAYLGDNDTLPV
        P+IVEPPTLEQKPLPSHLKYAYLGDNDTLPV
Subjt:  PSIVEPPTLEQKPLPSHLKYAYLGDNDTLPV

A0A6J1E3L7 uncharacterized protein LOC1110257542.1e-1273.08Show/hide
Query:  MKLPGDFEECSAINSLNPIMFDEFYDLLVTEIEEELDKIAEGPEDMANPIEK
        MKLPGDFEECSAI +LNP+MFDEFYDLLV EIE+E DKIAEGP+++    +K
Subjt:  MKLPGDFEECSAINSLNPIMFDEFYDLLVTEIEEELDKIAEGPEDMANPIEK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAATTACCAGGAGACTTTGAAGAGTGCTCTGCTATAAATAGCTTGAATCCTATTATGTTTGATGAGTTTTATGACTTATTAGTTACAGAGATTGAAGAAGAGCTTGA
TAAGATAGCAGAAGGACCAGAAGATATGGCTAATCCTATTGAAAAAATACAAAAAGAATGCAAGTCGTTACTTCCGTCCATAGTGGAACCACCCACGTTGGAGCAGAAGC
CATTGCCGTCGCATTTGAAATATGCGTATCTAGGGGATAACGACACTTTACCAGTTCGAGAAGTCGTGCAACATATCTACAACTTACGGACTTCATTGGATTTTGCGGTT
TTACCTTCATGGCCTCCAGCGCTAGCTGCTATCCTTGGTCATCCATCTCCCAGTATTGACACTGATCCTAGTCCACAACCTCCGACTTCATGA
mRNA sequenceShow/hide mRNA sequence
ATGAAATTACCAGGAGACTTTGAAGAGTGCTCTGCTATAAATAGCTTGAATCCTATTATGTTTGATGAGTTTTATGACTTATTAGTTACAGAGATTGAAGAAGAGCTTGA
TAAGATAGCAGAAGGACCAGAAGATATGGCTAATCCTATTGAAAAAATACAAAAAGAATGCAAGTCGTTACTTCCGTCCATAGTGGAACCACCCACGTTGGAGCAGAAGC
CATTGCCGTCGCATTTGAAATATGCGTATCTAGGGGATAACGACACTTTACCAGTTCGAGAAGTCGTGCAACATATCTACAACTTACGGACTTCATTGGATTTTGCGGTT
TTACCTTCATGGCCTCCAGCGCTAGCTGCTATCCTTGGTCATCCATCTCCCAGTATTGACACTGATCCTAGTCCACAACCTCCGACTTCATGA
Protein sequenceShow/hide protein sequence
MKLPGDFEECSAINSLNPIMFDEFYDLLVTEIEEELDKIAEGPEDMANPIEKIQKECKSLLPSIVEPPTLEQKPLPSHLKYAYLGDNDTLPVREVVQHIYNLRTSLDFAV
LPSWPPALAAILGHPSPSIDTDPSPQPPTS