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Moc04g15340 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc04g15340
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr4:11589649..11594405
RNA-Seq ExpressionMoc04g15340
SyntenyMoc04g15340
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022154103.1 uncharacterized protein LOC111021439 [Momordica charantia]5.0e-0845.28Show/hide
Query:  PGHRLNSTTLYRGEPAEELKLDLLEAHRETARLRTAEYKNRIARYYDSKVKKRDFKEENKNDPKRDKELK---PEIIDWERPTRDVTGRPKERPSAKAEN
        P  R+   TL   + + +L LDLLE HRETARLRTAEYKNRIARYY+SKVKKRDFKE +     R  ++    P   + ++  + +    + RP+ K   
Subjt:  PGHRLNSTTLYRGEPAEELKLDLLEAHRETARLRTAEYKNRIARYYDSKVKKRDFKEENKNDPKRDKELK---PEIIDWERPTRDVTGRPKERPSAKAEN

Query:  EESDRR
         E  RR
Subjt:  EESDRR

XP_022156048.1 uncharacterized protein LOC111023016 [Momordica charantia]2.2e-1664.84Show/hide
Query:  RLRTAEYKNRIARYYDSKV-KKRDFKEENKNDPKRDKELKPEIIDWERPTRDVTGRPKERPSAKAENEESDRRRTNQAERARFRPLLDPDP
        R+R    K R    Y S V +      ENKNDPKRDKELK EIIDW RP RDVTGRPKERP+A A+NEESD RRTN+AERAR RP+L P P
Subjt:  RLRTAEYKNRIARYYDSKV-KKRDFKEENKNDPKRDKELKPEIIDWERPTRDVTGRPKERPSAKAENEESDRRRTNQAERARFRPLLDPDP

XP_022156048.1 uncharacterized protein LOC111023016 [Momordica charantia]1.1e-0455.93Show/hide
Query:  GKPASGLNKATDLSGEARSSPGHRLNPTTFDRG--------EPVTRGEARSSPGHRLNS
        G+P +GLNKATDLSGEAR SPGHRLN TT DRG         P+T  E R + G +L +
Subjt:  GKPASGLNKATDLSGEARSSPGHRLNPTTFDRG--------EPVTRGEARSSPGHRLNS

XP_022156048.1 uncharacterized protein LOC111023016 [Momordica charantia]6.9e-1070.18Show/hide
Query:  PGHRLNSTTLYRGEPAEELKLDLLEAHRETARLRTAEYKNRIARYYDSKVKKRDFKE
        P  R+   TL     + +L LDLLE HRETARLRTAEYKNRIARYY+SKVKKRDFKE
Subjt:  PGHRLNSTTLYRGEPAEELKLDLLEAHRETARLRTAEYKNRIARYYDSKVKKRDFKE

XP_022156561.1 uncharacterized protein LOC111023436 [Momordica charantia]2.0e-0968.42Show/hide
Query:  PGHRLNSTTLYRGEPAEELKLDLLEAHRETARLRTAEYKNRIARYYDSKVKKRDFKE
        P  R+    L     + +L LDLLE HRETARLRTAEYKNRIARYY+SKVKKRDFKE
Subjt:  PGHRLNSTTLYRGEPAEELKLDLLEAHRETARLRTAEYKNRIARYYDSKVKKRDFKE

XP_022156571.1 uncharacterized protein LOC111023448 [Momordica charantia]9.9e-3363.78Show/hide
Query:  MNPDESHQCFGKKSLKEAVDQSGEARSSPNHQLNPTTLDGGKPASGLNKATDLSGEARSSPGHRLNPTTFDRGEPVT--------RGEARSSPGHRLNST
        MNPDESH+CF +KSLK+A D   EAR SP+ QLNPTTLDGG+P SGLNKATDLSG+AR SPG+RLNPTT D+G PV          G+AR SPGHRLNST
Subjt:  MNPDESHQCFGKKSLKEAVDQSGEARSSPNHQLNPTTLDGGKPASGLNKATDLSGEARSSPGHRLNPTTFDRGEPVT--------RGEARSSPGHRLNST

Query:  TLYRGEPAEELKLDLLEAHRETARLRT
        TL RGEPAEE++   L A      + T
Subjt:  TLYRGEPAEELKLDLLEAHRETARLRT

TrEMBL top hitse value%identityAlignment
A0A6J1DJC7 Ribonuclease H1.8e-0845.28Show/hide
Query:  PGHRLNSTTLYRGEPAEELKLDLLEAHRETARLRTAEYKNRIARYYDSKVKKRDFKEENKNDPKRDKELK---PEIIDWERPTRDVTGRPKERPSAKAEN
        P  R+   TL   + + +L LDLLE HRETARLRTAEYKNRIARYY+SKVKKRDFKE +     R  ++    P   + ++  + +    + RP+ K   
Subjt:  PGHRLNSTTLYRGEPAEELKLDLLEAHRETARLRTAEYKNRIARYYDSKVKKRDFKEENKNDPKRDKELK---PEIIDWERPTRDVTGRPKERPSAKAEN

Query:  EESDRR
         E  RR
Subjt:  EESDRR

A0A6J1DPJ5 uncharacterized protein LOC1110230161.1e-1664.84Show/hide
Query:  RLRTAEYKNRIARYYDSKV-KKRDFKEENKNDPKRDKELKPEIIDWERPTRDVTGRPKERPSAKAENEESDRRRTNQAERARFRPLLDPDP
        R+R    K R    Y S V +      ENKNDPKRDKELK EIIDW RP RDVTGRPKERP+A A+NEESD RRTN+AERAR RP+L P P
Subjt:  RLRTAEYKNRIARYYDSKV-KKRDFKEENKNDPKRDKELKPEIIDWERPTRDVTGRPKERPSAKAENEESDRRRTNQAERARFRPLLDPDP

A0A6J1DPJ5 uncharacterized protein LOC1110230165.5e-0555.93Show/hide
Query:  GKPASGLNKATDLSGEARSSPGHRLNPTTFDRG--------EPVTRGEARSSPGHRLNS
        G+P +GLNKATDLSGEAR SPGHRLN TT DRG         P+T  E R + G +L +
Subjt:  GKPASGLNKATDLSGEARSSPGHRLNPTTFDRG--------EPVTRGEARSSPGHRLNS

A0A6J1DPJ5 uncharacterized protein LOC1110230163.3e-1070.18Show/hide
Query:  PGHRLNSTTLYRGEPAEELKLDLLEAHRETARLRTAEYKNRIARYYDSKVKKRDFKE
        P  R+   TL     + +L LDLLE HRETARLRTAEYKNRIARYY+SKVKKRDFKE
Subjt:  PGHRLNSTTLYRGEPAEELKLDLLEAHRETARLRTAEYKNRIARYYDSKVKKRDFKE

A0A6J1DVB6 uncharacterized protein LOC1110234369.7e-1068.42Show/hide
Query:  PGHRLNSTTLYRGEPAEELKLDLLEAHRETARLRTAEYKNRIARYYDSKVKKRDFKE
        P  R+    L     + +L LDLLE HRETARLRTAEYKNRIARYY+SKVKKRDFKE
Subjt:  PGHRLNSTTLYRGEPAEELKLDLLEAHRETARLRTAEYKNRIARYYDSKVKKRDFKE

A0A6J1DVC6 Ribonuclease H4.8e-3363.78Show/hide
Query:  MNPDESHQCFGKKSLKEAVDQSGEARSSPNHQLNPTTLDGGKPASGLNKATDLSGEARSSPGHRLNPTTFDRGEPVT--------RGEARSSPGHRLNST
        MNPDESH+CF +KSLK+A D   EAR SP+ QLNPTTLDGG+P SGLNKATDLSG+AR SPG+RLNPTT D+G PV          G+AR SPGHRLNST
Subjt:  MNPDESHQCFGKKSLKEAVDQSGEARSSPNHQLNPTTLDGGKPASGLNKATDLSGEARSSPGHRLNPTTFDRGEPVT--------RGEARSSPGHRLNST

Query:  TLYRGEPAEELKLDLLEAHRETARLRT
        TL RGEPAEE++   L A      + T
Subjt:  TLYRGEPAEELKLDLLEAHRETARLRT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATCCTGATGAGAGCCATCAGTGCTTCGGAAAGAAGAGCCTAAAAGAAGCGGTCGATCAATCGGGTGAGGCAAGATCGAGCCCTAATCATCAACTTAATCCG
ACCACCCTTGACGGGGGAAAACCAGCGTCAGGCCTGAATAAAGCGACAGACCTCTCGGGAGAGGCAAGGTCGAGCCCTGGTCATCGACTTAATCCGACCACCTTT
GACAGGGGAGAACCAGTGACGAGAGGTGAGGCAAGGTCGAGCCCTGGTCATCGACTTAATTCGACCACCCTTTACAGGGGAGAACCAGCTGAGGAGCTCAAGCTC
GACCTATTAGAAGCACATCGAGAAACAGCACGGCTACGAACGGCTGAATACAAAAATCGAATAGCTCGATACTACGACTCGAAGGTTAAGAAACGTGACTTTAAA
GAAGAGAACAAAAACGATCCGAAACGGGATAAGGAGTTGAAGCCTGAGATCATCGATTGGGAGAGACCAACCCGCGACGTAACGGGCCGGCCCAAAGAACGACCT
AGCGCCAAGGCAGAGAACGAGGAAAGCGACCGGCGGAGAACTAACCAGGCCGAGAGGGCTCGGTTCCGACCCCTGCTCGATCCCGACCCCTTCTCGATCCCAACC
CCTGCTCGGCCCACGACCCAACCCGAGAATCTCCCGCCTGCGATCTACGATCCCTCGGGCCCTGCAACGCTCAATTAG
mRNA sequenceShow/hide mRNA sequence
ATGAATCCTGATGAGAGCCATCAGTGCTTCGGAAAGAAGAGCCTAAAAGAAGCGGTCGATCAATCGGGTGAGGCAAGATCGAGCCCTAATCATCAACTTAATCCG
ACCACCCTTGACGGGGGAAAACCAGCGTCAGGCCTGAATAAAGCGACAGACCTCTCGGGAGAGGCAAGGTCGAGCCCTGGTCATCGACTTAATCCGACCACCTTT
GACAGGGGAGAACCAGTGACGAGAGGTGAGGCAAGGTCGAGCCCTGGTCATCGACTTAATTCGACCACCCTTTACAGGGGAGAACCAGCTGAGGAGCTCAAGCTC
GACCTATTAGAAGCACATCGAGAAACAGCACGGCTACGAACGGCTGAATACAAAAATCGAATAGCTCGATACTACGACTCGAAGGTTAAGAAACGTGACTTTAAA
GAAGAGAACAAAAACGATCCGAAACGGGATAAGGAGTTGAAGCCTGAGATCATCGATTGGGAGAGACCAACCCGCGACGTAACGGGCCGGCCCAAAGAACGACCT
AGCGCCAAGGCAGAGAACGAGGAAAGCGACCGGCGGAGAACTAACCAGGCCGAGAGGGCTCGGTTCCGACCCCTGCTCGATCCCGACCCCTTCTCGATCCCAACC
CCTGCTCGGCCCACGACCCAACCCGAGAATCTCCCGCCTGCGATCTACGATCCCTCGGGCCCTGCAACGCTCAATTAG
Protein sequenceShow/hide protein sequence
MNPDESHQCFGKKSLKEAVDQSGEARSSPNHQLNPTTLDGGKPASGLNKATDLSGEARSSPGHRLNPTTFDRGEPVTRGEARSSPGHRLNSTTLYRGEPAEELKL
DLLEAHRETARLRTAEYKNRIARYYDSKVKKRDFKEENKNDPKRDKELKPEIIDWERPTRDVTGRPKERPSAKAENEESDRRRTNQAERARFRPLLDPDPFSIPT
PARPTTQPENLPPAIYDPSGPATLN