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Moc04g16940 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc04g16940
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionTransposon Tf2-1 polyprotein isoform X1
Genome locationchr4:12510776..12512200
RNA-Seq ExpressionMoc04g16940
SyntenyMoc04g16940
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsIPR000953 - Chromo/chromo shadow domain
IPR016197 - Chromo-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035955.1 transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa]3.8e-0526.4Show/hide
Query:  MPPTSQLNVLTVAALLDVELFKSEVSTDPFLSKVLREIAADPESHPKYSVQHGTLNYKNRMRIV---------------------------IATLDQ---
        +PPT  L+  T  ALLDV + + EV  DP L ++++ +       P Y++Q G L +K R+  V                             T+D+   
Subjt:  MPPTSQLNVLTVAALLDVELFKSEVSTDPFLSKVLREIAADPESHPKYSVQHGTLNYKNRMRIV---------------------------IATLDQ---

Query:  -----------QLADRDQALLVLKDNLLSPPQLTEEME---WKLE-------------------PEEIFATGANEATGAPEVLVSWKGLPEEEATWE
                   Q++ R +    L      P ++ E++E   +KLE                   PEE+++   N+ T   E+LVSWK LP  EATWE
Subjt:  -----------QLADRDQALLVLKDNLLSPPQLTEEME---WKLE-------------------PEEIFATGANEATGAPEVLVSWKGLPEEEATWE

KAA0066077.1 Transposon Tf2-9 polyprotein [Cucumis melo var. makuwa]8.5e-0546.97Show/hide
Query:  MPPTSQLNVLTVAALLDVELFKSEVSTDPFLSKVLREIAADPESHPKYSVQHGTLNYKNRMRIVIA
        +P   QLN LTV AL+D++L + EV+ D +L ++++ I  + E  PKY++QHG L YK   RIVIA
Subjt:  MPPTSQLNVLTVAALLDVELFKSEVSTDPFLSKVLREIAADPESHPKYSVQHGTLNYKNRMRIVIA

TYK09954.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]3.8e-0538.83Show/hide
Query:  LNYKNRMRIVIATLDQQLADRDQALLVLKDNLL-----------------------SPPQLTEEMEWKLEPEEIFATGANEATGAPEVLVSWKGLPEEEA
        L Y   M    +TLDQQL DRD AL  LK++L                          P L+E  EW ++ EE +    N +T   EVL+SWKGLP  EA
Subjt:  LNYKNRMRIVIATLDQQLADRDQALLVLKDNLL-----------------------SPPQLTEEMEWKLEPEEIFATGANEATGAPEVLVSWKGLPEEEA

Query:  TWE
        TWE
Subjt:  TWE

TYK27646.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]2.5e-0450.94Show/hide
Query:  LKDNLLSPPQLTEEMEWKLEPEEIFATGANEATGAPEVLVSWKGLPEEEATWE
        +K+     P + E  EW  +PEE++A   N+AT   EVLVSWKGLP  EATWE
Subjt:  LKDNLLSPPQLTEEMEWKLEPEEIFATGANEATGAPEVLVSWKGLPEEEATWE

TYK27646.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]6.1e-0342.62Show/hide
Query:  MPPTSQLNVLTVAALLDVELFKSEVSTDPFLSKVLREIAADPESHPKYSVQHGTLNYKNRM
        M PT+ LN LT  ALLDVE+ + EV  DP L +++R I       P Y+   G L +K R+
Subjt:  MPPTSQLNVLTVAALLDVELFKSEVSTDPFLSKVLREIAADPESHPKYSVQHGTLNYKNRM

XP_022156316.1 uncharacterized protein LOC111023241 isoform X1 [Momordica charantia]2.3e-1068.09Show/hide
Query:  SPPQLTEEMEWKLEPEEIFATGANEATGAPEVLVSWKGLPEEEATWE
        +P QLTE+ EW+ EPEE+FATG N  TG PE L+ WKGLPEEEATW+
Subjt:  SPPQLTEEMEWKLEPEEIFATGANEATGAPEVLVSWKGLPEEEATWE

TrEMBL top hitse value%identityAlignment
A0A1J3J6I8 Chromo domain-containing protein (Fragment)9.2e-0554.35Show/hide
Query:  PPQLTEEMEWKLEPEEIFATGANEATGAPEVLVSWKGLPEEEATWE
        PPQLTEE   + EPEE++ T  N  TG  EVL+ WKGLP  + +WE
Subjt:  PPQLTEEMEWKLEPEEIFATGANEATGAPEVLVSWKGLPEEEATWE

A0A5A7T3A9 Transposon Tf2-1 polyprotein isoform X11.8e-0526.4Show/hide
Query:  MPPTSQLNVLTVAALLDVELFKSEVSTDPFLSKVLREIAADPESHPKYSVQHGTLNYKNRMRIV---------------------------IATLDQ---
        +PPT  L+  T  ALLDV + + EV  DP L ++++ +       P Y++Q G L +K R+  V                             T+D+   
Subjt:  MPPTSQLNVLTVAALLDVELFKSEVSTDPFLSKVLREIAADPESHPKYSVQHGTLNYKNRMRIV---------------------------IATLDQ---

Query:  -----------QLADRDQALLVLKDNLLSPPQLTEEME---WKLE-------------------PEEIFATGANEATGAPEVLVSWKGLPEEEATWE
                   Q++ R +    L      P ++ E++E   +KLE                   PEE+++   N+ T   E+LVSWK LP  EATWE
Subjt:  -----------QLADRDQALLVLKDNLLSPPQLTEEME---WKLE-------------------PEEIFATGANEATGAPEVLVSWKGLPEEEATWE

A0A5A7VG68 Transposon Tf2-9 polyprotein4.1e-0546.97Show/hide
Query:  MPPTSQLNVLTVAALLDVELFKSEVSTDPFLSKVLREIAADPESHPKYSVQHGTLNYKNRMRIVIA
        +P   QLN LTV AL+D++L + EV+ D +L ++++ I  + E  PKY++QHG L YK   RIVIA
Subjt:  MPPTSQLNVLTVAALLDVELFKSEVSTDPFLSKVLREIAADPESHPKYSVQHGTLNYKNRMRIVIA

A0A5D3CFG5 Ty3/gypsy retrotransposon protein1.8e-0538.83Show/hide
Query:  LNYKNRMRIVIATLDQQLADRDQALLVLKDNLL-----------------------SPPQLTEEMEWKLEPEEIFATGANEATGAPEVLVSWKGLPEEEA
        L Y   M    +TLDQQL DRD AL  LK++L                          P L+E  EW ++ EE +    N +T   EVL+SWKGLP  EA
Subjt:  LNYKNRMRIVIATLDQQLADRDQALLVLKDNLL-----------------------SPPQLTEEMEWKLEPEEIFATGANEATGAPEVLVSWKGLPEEEA

Query:  TWE
        TWE
Subjt:  TWE

A0A6J1DUL0 uncharacterized protein LOC111023241 isoform X11.1e-1068.09Show/hide
Query:  SPPQLTEEMEWKLEPEEIFATGANEATGAPEVLVSWKGLPEEEATWE
        +P QLTE+ EW+ EPEE+FATG N  TG PE L+ WKGLPEEEATW+
Subjt:  SPPQLTEEMEWKLEPEEIFATGANEATGAPEVLVSWKGLPEEEATWE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCCCCACCAGTCAGTTGAATGTGCTAACCGTCGCCGCTTTGTTAGATGTAGAGCTCTTTAAGTCGGAGGTCTCGACCGATCCGTTCCTATCCAAGGTCTTGCGTGA
GATAGCAGCTGACCCGGAGAGCCATCCCAAGTACAGTGTTCAACATGGTACCCTCAACTACAAGAATCGAATGAGGATAGTTATTGCAACACTGGACCAACAATTGGCGG
ACAGAGACCAAGCACTATTGGTGCTTAAAGACAACCTGCTATCCCCTCCCCAACTGACAGAGGAGATGGAGTGGAAGTTAGAGCCTGAAGAAATCTTTGCTACGGGAGCT
AATGAGGCCACTGGTGCTCCAGAAGTCTTAGTGAGTTGGAAGGGACTACCTGAAGAGGAAGCTACCTGGGAATAA
mRNA sequenceShow/hide mRNA sequence
ATGCCCCCCACCAGTCAGTTGAATGTGCTAACCGTCGCCGCTTTGTTAGATGTAGAGCTCTTTAAGTCGGAGGTCTCGACCGATCCGTTCCTATCCAAGGTCTTGCGTGA
GATAGCAGCTGACCCGGAGAGCCATCCCAAGTACAGTGTTCAACATGGTACCCTCAACTACAAGAATCGAATGAGGATAGTTATTGCAACACTGGACCAACAATTGGCGG
ACAGAGACCAAGCACTATTGGTGCTTAAAGACAACCTGCTATCCCCTCCCCAACTGACAGAGGAGATGGAGTGGAAGTTAGAGCCTGAAGAAATCTTTGCTACGGGAGCT
AATGAGGCCACTGGTGCTCCAGAAGTCTTAGTGAGTTGGAAGGGACTACCTGAAGAGGAAGCTACCTGGGAATAA
Protein sequenceShow/hide protein sequence
MPPTSQLNVLTVAALLDVELFKSEVSTDPFLSKVLREIAADPESHPKYSVQHGTLNYKNRMRIVIATLDQQLADRDQALLVLKDNLLSPPQLTEEMEWKLEPEEIFATGA
NEATGAPEVLVSWKGLPEEEATWE