; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc04g17110 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc04g17110
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRNase H domain-containing protein
Genome locationchr4:12614642..12616750
RNA-Seq ExpressionMoc04g17110
SyntenyMoc04g17110
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAD1832807.1 unnamed protein product [Ananas comosus var. bracteatus]2.8e-0638.18Show/hide
Query:  LHKANDISMPPQVNPWIALSRVPPLDG-LKLNTDAACAGRDHFTGLGFLLRDYFGTLTKAGCQFLPFSHTPILVELLAIHAGLLLVIFNGCSWLLVESDS
        L +    + PP     + +S  PP DG +KLNTD +  GRD   G GF+ RD  G    AG    P    P+  EL A+ A L   I  G   +L+ESDS
Subjt:  LHKANDISMPPQVNPWIALSRVPPLDG-LKLNTDAACAGRDHFTGLGFLLRDYFGTLTKAGCQFLPFSHTPILVELLAIHAGLLLVIFNGCSWLLVESDS

Query:  LASISLLNGR
         +++ LL GR
Subjt:  LASISLLNGR

KAF7828542.1 reverse transcriptase [Senna tora]8.1e-0633.08Show/hide
Query:  HKANDISMPPQVNPWIALSRVPPLDGLKLNTDAACAGRDHFTGLGFLLRDYFGTLTKAGCQFLPFSHTPILVELLAIHAGLLLVIFNGCSWLLVESDSLA
        H A       QVN        P  +  KLN D AC+G      +G L+RD +G   K    F+ +       E+ AI  GL L +   C +L VESDSL 
Subjt:  HKANDISMPPQVNPWIALSRVPPLDGLKLNTDAACAGRDHFTGLGFLLRDYFGTLTKAGCQFLPFSHTPILVELLAIHAGLLLVIFNGCSWLLVESDSLA

Query:  SISLLNGRSLK----LVVLKKWCFTTFNRF
        +++LLN  ++     L  L  WC +  +RF
Subjt:  SISLLNGRSLK----LVVLKKWCFTTFNRF

OAY82868.1 putative ribonuclease H protein [Ananas comosus]1.1e-0537.84Show/hide
Query:  DLLHKANDISMPPQVNPWIALSRVPPLDGLKLNTDAACAGRDHFTGLGFLLRDYFGTLTKAGCQFLPFSHTPILVELLAIHAGLLLVIFNGCSWLLVESD
        DL       S PP     +   R PP   +KLNTD +  GR    G GF+ RD  G    AG    P    P+  EL AI A L   I  G   +L+ESD
Subjt:  DLLHKANDISMPPQVNPWIALSRVPPLDGLKLNTDAACAGRDHFTGLGFLLRDYFGTLTKAGCQFLPFSHTPILVELLAIHAGLLLVIFNGCSWLLVESD

Query:  SLASISLLNGR
        S +++ LL GR
Subjt:  SLASISLLNGR

XP_022131661.1 uncharacterized protein LOC111004786 [Momordica charantia]2.8e-0639.22Show/hide
Query:  SMPPQVNPWIALSRVPPLD-GLKLNTDAACAGRDHFTGLGFLLRDYFGTLTKAGCQFLPFSHTPILVELLAIHAGLLLVIFNGCSWLLVESDSLASISLL
        S+PP    W+     PP D  +K+N+DAAC  R   TGLG ++RD+FG L  A   FLP    P+  E+  I   L L      + L+VESD   +I L+
Subjt:  SMPPQVNPWIALSRVPPLD-GLKLNTDAACAGRDHFTGLGFLLRDYFGTLTKAGCQFLPFSHTPILVELLAIHAGLLLVIFNGCSWLLVESDSLASISLL

Query:  NG
         G
Subjt:  NG

XP_024200343.1 uncharacterized protein LOC112203645 [Rosa chinensis]1.1e-0543.16Show/hide
Query:  RVPPLDGLKLNTDAACAGRDHFTGLGFLLRDYFGTLTKAGCQFLPFSHTPILVELLAIHAGLLLVIFNGCSWLLVESDSLASISLLNGRSLKLVV
        R P    LKLNTDAA   +    GLG ++RD  G L  AG + LP + + + +E LA++ GLLL    G   L+VESDS   I  LN   L L V
Subjt:  RVPPLDGLKLNTDAACAGRDHFTGLGFLLRDYFGTLTKAGCQFLPFSHTPILVELLAIHAGLLLVIFNGCSWLLVESDSLASISLLNGRSLKLVV

TrEMBL top hitse value%identityAlignment
A0A2P5ENL3 Ribonuclease H-like domain containing protein5.6e-0539.53Show/hide
Query:  PLD--GLKLNTDAACAGRDHFTGLGFLLRDYFGTLTKAGCQFLPFSHTPILVELLAIHAGLLLVIFNGCSWLLVESDSLASISLLN
        PLD    KLN DAA       TG+G ++RD+ G +  AGC  +P    P+  ELLA+  GL+LV + G    +++SDS  ++ L+N
Subjt:  PLD--GLKLNTDAACAGRDHFTGLGFLLRDYFGTLTKAGCQFLPFSHTPILVELLAIHAGLLLVIFNGCSWLLVESDSLASISLLN

A0A5C7IIT4 Uncharacterized protein1.3e-0430.66Show/hide
Query:  PLDGLKLNTDAACAGRDHFTGLGFLLRDYFGTLTKAGCQFLPFSHTPILVELLAIHAGLLLVIFNGCSWLLVESDSLASISLLNGRSLKL----VVLKKW
        P    K+NTDA    R   TG+G ++RD +G +  + CQ  P    P  VE +A+  G  L +  G     +ESDSL+ ++L+N   +      VVL   
Subjt:  PLDGLKLNTDAACAGRDHFTGLGFLLRDYFGTLTKAGCQFLPFSHTPILVELLAIHAGLLLVIFNGCSWLLVESDSLASISLLNGRSLKL----VVLKKW

Query:  CFTTFNRFFVDLKSAPSCMSLEKAIARLISLQNLSFK
             N FF  +   P    L   +A  ++  +LSF+
Subjt:  CFTTFNRFFVDLKSAPSCMSLEKAIARLISLQNLSFK

A0A6J1BQ49 uncharacterized protein LOC1110047861.3e-0639.22Show/hide
Query:  SMPPQVNPWIALSRVPPLD-GLKLNTDAACAGRDHFTGLGFLLRDYFGTLTKAGCQFLPFSHTPILVELLAIHAGLLLVIFNGCSWLLVESDSLASISLL
        S+PP    W+     PP D  +K+N+DAAC  R   TGLG ++RD+FG L  A   FLP    P+  E+  I   L L      + L+VESD   +I L+
Subjt:  SMPPQVNPWIALSRVPPLD-GLKLNTDAACAGRDHFTGLGFLLRDYFGTLTKAGCQFLPFSHTPILVELLAIHAGLLLVIFNGCSWLLVESDSLASISLL

Query:  NG
         G
Subjt:  NG

A0A6J5UV01 Reverse transcriptase domain-containing protein8.7e-0635.24Show/hide
Query:  NDISMPPQVNPWIALS-RVPPLDGLKLNTDAACAGRDHFTGLGFLLRDYFGTLTKAGCQFLPFSHTPILVELLAIHAGLLLVIFNGCSWLLVESDSLASI
        N++  PP++      S R  P   LK+N DAA   +    G+G+++RD +G + +AGC+      + + +E  AI   LL  + +G S L VESDSL  I
Subjt:  NDISMPPQVNPWIALS-RVPPLDGLKLNTDAACAGRDHFTGLGFLLRDYFGTLTKAGCQFLPFSHTPILVELLAIHAGLLLVIFNGCSWLLVESDSLASI

Query:  SLLNG
         +L G
Subjt:  SLLNG

J7G0Q7 Non-ltr retroelement reverse transcriptase5.6e-0535.51Show/hide
Query:  KANDISMPPQVNPWIALSRVPPLDGLKLNTDAACAGRDHFTGLGFLLRDYFGTLTKAGCQFLPFSHTPILVELLAIHAGLLLVIFNGCSWLLVESDSLAS
        KA +  +P  +  W    + P    LK+N D A   +D   G G ++RD FG+L  AG +      + ++ ELLAI  GL LV+      ++VESD L +
Subjt:  KANDISMPPQVNPWIALSRVPPLDGLKLNTDAACAGRDHFTGLGFLLRDYFGTLTKAGCQFLPFSHTPILVELLAIHAGLLLVIFNGCSWLLVESDSLAS

Query:  ISLLNGR
        I LLN +
Subjt:  ISLLNGR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGGCTGGATTACCTCATATTGGACCTCCTTCATAAGGCCAATGACATCTCCATGCCTCCGCAGGTCAATCCGTGGATAGCCTTGTCTCGGGTTCCTCCATTGGATGG
CCTCAAGCTCAATACAGACGCTGCTTGTGCAGGCAGAGATCATTTTACAGGTTTGGGGTTTCTTCTGAGGGACTACTTTGGAACCCTCACCAAGGCTGGTTGTCAATTTC
TACCATTTTCACATACACCCATTCTTGTAGAGCTTCTAGCCATTCATGCTGGTTTACTCCTTGTGATCTTTAATGGATGCTCTTGGCTTCTGGTGGAATCGGACTCCCTC
GCTTCAATTTCGCTACTCAATGGTAGATCTCTGAAACTCGTGGTCCTAAAAAAGTGGTGTTTCACGACATTCAACAGGTTTTTCGTCGATTTGAAGTCTGCTCCTTCTTG
CATGTCCCTCGAGAAAGCAATCGCCCGGCTGATTTCCTTGCAAAATTTGTCCTTCAAGCATCCTTCTCTACTCCGTCAACCACCACCCTACTTGGGTTTTCTTCTCCTTG
CCCTTGCCCTTCAACCAGCAGTGGCGGCAGCAGACCCACGCGAACCCTACGGTGACCCAGCCCTCCATCGGCGGCACGTTTTGTTCCACGCTGACGAAGCTACACGATGC
AGCGACGACGTTCGATTTGTGTCAGTAGCGGCAGCGTTCTGGCGTTGTTTTGCTCAACAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGCGGCTGGATTACCTCATATTGGACCTCCTTCATAAGGCCAATGACATCTCCATGCCTCCGCAGGTCAATCCGTGGATAGCCTTGTCTCGGGTTCCTCCATTGGATGG
CCTCAAGCTCAATACAGACGCTGCTTGTGCAGGCAGAGATCATTTTACAGGTTTGGGGTTTCTTCTGAGGGACTACTTTGGAACCCTCACCAAGGCTGGTTGTCAATTTC
TACCATTTTCACATACACCCATTCTTGTAGAGCTTCTAGCCATTCATGCTGGTTTACTCCTTGTGATCTTTAATGGATGCTCTTGGCTTCTGGTGGAATCGGACTCCCTC
GCTTCAATTTCGCTACTCAATGGTAGATCTCTGAAACTCGTGGTCCTAAAAAAGTGGTGTTTCACGACATTCAACAGGTTTTTCGTCGATTTGAAGTCTGCTCCTTCTTG
CATGTCCCTCGAGAAAGCAATCGCCCGGCTGATTTCCTTGCAAAATTTGTCCTTCAAGCATCCTTCTCTACTCCGTCAACCACCACCCTACTTGGGTTTTCTTCTCCTTG
CCCTTGCCCTTCAACCAGCAGTGGCGGCAGCAGACCCACGCGAACCCTACGGTGACCCAGCCCTCCATCGGCGGCACGTTTTGTTCCACGCTGACGAAGCTACACGATGC
AGCGACGACGTTCGATTTGTGTCAGTAGCGGCAGCGTTCTGGCGTTGTTTTGCTCAACAGTAG
Protein sequenceShow/hide protein sequence
MRLDYLILDLLHKANDISMPPQVNPWIALSRVPPLDGLKLNTDAACAGRDHFTGLGFLLRDYFGTLTKAGCQFLPFSHTPILVELLAIHAGLLLVIFNGCSWLLVESDSL
ASISLLNGRSLKLVVLKKWCFTTFNRFFVDLKSAPSCMSLEKAIARLISLQNLSFKHPSLLRQPPPYLGFLLLALALQPAVAAADPREPYGDPALHRRHVLFHADEATRC
SDDVRFVSVAAAFWRCFAQQ