; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc04g17120 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc04g17120
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionU11/U12 small nuclear ribonucleoprotein 48 kDa protein
Genome locationchr4:12619842..12627225
RNA-Seq ExpressionMoc04g17120
SyntenyMoc04g17120
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022144020.1 (-)-germacrene D synthase-like [Momordica charantia]4.6e-1254.35Show/hide
Query:  PLQFAVILPLLALALYASVKYSSQLNDLQLLHGNHNEHAGRTTLDKVVVMALRVQELIYYLEIIGITTRYRILGSNENSIALVVSDYYDCQD
        PL+   I+P L LALYA VKYSSQLNDLQLLHGNH+EHA         V+ L +                RILGSNE+S+ LVVSDYYDCQ+
Subjt:  PLQFAVILPLLALALYASVKYSSQLNDLQLLHGNHNEHAGRTTLDKVVVMALRVQELIYYLEIIGITTRYRILGSNENSIALVVSDYYDCQD
XP_022151686.1 U11/U12 small nuclear ribonucleoprotein 48 kDa protein [Momordica charantia]5.8e-2373.03Show/hide
Query:  PLQFAVILPLLALALYASVKYSSQLNDLQLLHGNHNEHAGRTTLDKVVVMALRVQELIYYLEIIGITTRYRILGSNENSIALVVSDYYD
        PL+   ILP L LA+YA VKYSSQLNDLQLL GNH+  AGRTT DKVV +ALRV+ELI YLEIIGITT+ RILGS+ +S+ALV SDYYD
Subjt:  PLQFAVILPLLALALYASVKYSSQLNDLQLLHGNHNEHAGRTTLDKVVVMALRVQELIYYLEIIGITTRYRILGSNENSIALVVSDYYD
TrEMBL top hitse value%identityAlignment
A0A6J1CQG9 (-)-germacrene D synthase-like2.2e-1254.35Show/hide
Query:  PLQFAVILPLLALALYASVKYSSQLNDLQLLHGNHNEHAGRTTLDKVVVMALRVQELIYYLEIIGITTRYRILGSNENSIALVVSDYYDCQD
        PL+   I+P L LALYA VKYSSQLNDLQLLHGNH+EHA         V+ L +                RILGSNE+S+ LVVSDYYDCQ+
Subjt:  PLQFAVILPLLALALYASVKYSSQLNDLQLLHGNHNEHAGRTTLDKVVVMALRVQELIYYLEIIGITTRYRILGSNENSIALVVSDYYDCQD
A0A6J1DFF2 U11/U12 small nuclear ribonucleoprotein 48 kDa protein2.8e-2373.03Show/hide
Query:  PLQFAVILPLLALALYASVKYSSQLNDLQLLHGNHNEHAGRTTLDKVVVMALRVQELIYYLEIIGITTRYRILGSNENSIALVVSDYYD
        PL+   ILP L LA+YA VKYSSQLNDLQLL GNH+  AGRTT DKVV +ALRV+ELI YLEIIGITT+ RILGS+ +S+ALV SDYYD
Subjt:  PLQFAVILPLLALALYASVKYSSQLNDLQLLHGNHNEHAGRTTLDKVVVMALRVQELIYYLEIIGITTRYRILGSNENSIALVVSDYYD
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTGAGTGTCAGGGCCTCGGGTATAAATGGTCGGGGGCTGATACGTCACTAACTGAGTATCGCGGCCTCGGGGTCGATGCACAGTTTAAAGCCTTGGGGATA
AATGGCAAGGTCGAACGCCAAGCCTTTGTAGATGAGTGTCGGGCTTTGGGGATAAATGGCAAGGGCCGATGCAATTCGAAGGATATGCTATTTGTGCGTGACCCT
TCAGATAAGGGCTGCTTACTGAGTACTGTGGTTGTACTCATCCCTCTTTTTCCCCTCCAGTTTGCAGTCATCCTGCCCTTATTAGCACTTGCACTTTATGCTTCA
GTGAAGTATAGTTCTCAGTTGAATGACCTACAGCTCCTGCATGGTAATCACAACGAACATGCGGGTCGTACCACTTTGGATAAGGTGGTTGTAATGGCTCTACGG
GTACAGGAGCTAATATATTACCTTGAAATAATTGGGATAACAACTCGGTATAGGATATTGGGATCGAATGAAAACTCTATCGCTTTAGTTGTCTCCGACTACTAT
GATTGTCAGGATAATGGCCCACAAATCTTCCATATGCTTTGGCAGTATGGTCGACTTGAGTGGAAAATTTCATGCGCCTGCACGGGAACCGAAATTCCACGAAGG
TCACACTACTCAGTCTCTGATCTAATCCTAAAAGAAATTTTTACCACTGAAACTGATGTCGTTTGTCGCCTGAACTCGTGGGTGTTAGAGTGGGTCGCTGGACTC
TTCGTCGTCGTCGGTCTATCACCGGAGGATGGTCTCAAGGCAGCAATGGAGGTCGTGAGAGATTATGTGAGTGTTCCAAAGAAATTGCAAGATTACTTATCTTAC
AATCTCTTCAGACTTTCTTGTATTACATCTAGTCATAGTCTAGCTTTCAATGGGTTTGATGTTCCCCCATTTTCGGGACAGGGGCCGTTTTCTTTAGCAGGTGTG
CCTTTTGGCTACATTATGGGGTATCTGGCTAGAGAGGAATAA
mRNA sequenceShow/hide mRNA sequence
ATGGGTGAGTGTCAGGGCCTCGGGTATAAATGGTCGGGGGCTGATACGTCACTAACTGAGTATCGCGGCCTCGGGGTCGATGCACAGTTTAAAGCCTTGGGGATA
AATGGCAAGGTCGAACGCCAAGCCTTTGTAGATGAGTGTCGGGCTTTGGGGATAAATGGCAAGGGCCGATGCAATTCGAAGGATATGCTATTTGTGCGTGACCCT
TCAGATAAGGGCTGCTTACTGAGTACTGTGGTTGTACTCATCCCTCTTTTTCCCCTCCAGTTTGCAGTCATCCTGCCCTTATTAGCACTTGCACTTTATGCTTCA
GTGAAGTATAGTTCTCAGTTGAATGACCTACAGCTCCTGCATGGTAATCACAACGAACATGCGGGTCGTACCACTTTGGATAAGGTGGTTGTAATGGCTCTACGG
GTACAGGAGCTAATATATTACCTTGAAATAATTGGGATAACAACTCGGTATAGGATATTGGGATCGAATGAAAACTCTATCGCTTTAGTTGTCTCCGACTACTAT
GATTGTCAGGATAATGGCCCACAAATCTTCCATATGCTTTGGCAGTATGGTCGACTTGAGTGGAAAATTTCATGCGCCTGCACGGGAACCGAAATTCCACGAAGG
TCACACTACTCAGTCTCTGATCTAATCCTAAAAGAAATTTTTACCACTGAAACTGATGTCGTTTGTCGCCTGAACTCGTGGGTGTTAGAGTGGGTCGCTGGACTC
TTCGTCGTCGTCGGTCTATCACCGGAGGATGGTCTCAAGGCAGCAATGGAGGTCGTGAGAGATTATGTGAGTGTTCCAAAGAAATTGCAAGATTACTTATCTTAC
AATCTCTTCAGACTTTCTTGTATTACATCTAGTCATAGTCTAGCTTTCAATGGGTTTGATGTTCCCCCATTTTCGGGACAGGGGCCGTTTTCTTTAGCAGGTGTG
CCTTTTGGCTACATTATGGGGTATCTGGCTAGAGAGGAATAA
Protein sequenceShow/hide protein sequence
MGECQGLGYKWSGADTSLTEYRGLGVDAQFKALGINGKVERQAFVDECRALGINGKGRCNSKDMLFVRDPSDKGCLLSTVVVLIPLFPLQFAVILPLLALALYAS
VKYSSQLNDLQLLHGNHNEHAGRTTLDKVVVMALRVQELIYYLEIIGITTRYRILGSNENSIALVVSDYYDCQDNGPQIFHMLWQYGRLEWKISCACTGTEIPRR
SHYSVSDLILKEIFTTETDVVCRLNSWVLEWVAGLFVVVGLSPEDGLKAAMEVVRDYVSVPKKLQDYLSYNLFRLSCITSSHSLAFNGFDVPPFSGQGPFSLAGV
PFGYIMGYLAREE