CuGenDBv2

Gene ID	Moc04g17140
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Ribonuclease H
Genome location	chr4:12631973..12639550
RNA-Seq Expression	Moc04g17140
Synteny	Moc04g17140
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006310 - DNA recombination (biological process) GO:0015074 - DNA integration (biological process) GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process) GO:0005634 - nucleus (cellular component) GO:0030430 - host cell cytoplasm (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003887 - DNA-directed DNA polymerase activity (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

EOY05656.1 Gag-pro-like protein [Theobroma cacao]

6.8e-16

68.42

Show/hide

Query:  QGNLLAPVPVEPLQPPYPKWYDPHVHCDYHVGAVGHSTENCTSLKHKVQVLMKTGLV
        +  LLA  P+EPL+PP+PKWYDP+ HCDYH G  GHSTENCT+LKHKVQ L+K GL+
Subjt:  QGNLLAPVPVEPLQPPYPKWYDPHVHCDYHVGAVGHSTENCTSLKHKVQVLMKTGLV

XP_017976382.1 PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC18598048 [Theobroma cacao]

4.0e-16

68.42

Show/hide

Query:  QGNLLAPVPVEPLQPPYPKWYDPHVHCDYHVGAVGHSTENCTSLKHKVQVLMKTGLV
        +  LLA  P+EPL+PP+PKWYDP+ HCDYH G  GHSTENCT++KHKVQVL+K GL+
Subjt:  QGNLLAPVPVEPLQPPYPKWYDPHVHCDYHVGAVGHSTENCTSLKHKVQVLMKTGLV

XP_017979843.1 PREDICTED: uncharacterized protein LOC108662779 [Theobroma cacao]

6.8e-16

68.42

Show/hide

Query:  QGNLLAPVPVEPLQPPYPKWYDPHVHCDYHVGAVGHSTENCTSLKHKVQVLMKTGLV
        +  LLA  P+EPL+PP+PKWYDP+ HCDYH G  GHSTENCT+LKHKVQ L+K GL+
Subjt:  QGNLLAPVPVEPLQPPYPKWYDPHVHCDYHVGAVGHSTENCTSLKHKVQVLMKTGLV

XP_017982275.1 PREDICTED: uncharacterized protein LOC108663211 [Theobroma cacao]

6.8e-16

68.42

Show/hide

Query:  QGNLLAPVPVEPLQPPYPKWYDPHVHCDYHVGAVGHSTENCTSLKHKVQVLMKTGLV
        +  LLA  P+EPL+PP+PKWYDP+ HCDYH G  GHSTENCT+LKHKVQ L+K GL+
Subjt:  QGNLLAPVPVEPLQPPYPKWYDPHVHCDYHVGAVGHSTENCTSLKHKVQVLMKTGLV

XP_022158986.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia]

5.2e-16

69.09

Show/hide

Query:  QGNLLAPVPVEPLQPPYPKWYDPHVHCDYHVGAVGHSTENCTSLKHKVQVLMKTG
        Q N LAPVPV+P+QPPYP+WYD +  CDYH GA+GHSTENCT+LK++VQ L+K G
Subjt:  QGNLLAPVPVEPLQPPYPKWYDPHVHCDYHVGAVGHSTENCTSLKHKVQVLMKTG

TrEMBL top hits

e value

%identity

Alignment

A0A061DPM2 Uncharacterized protein

9.6e-16

68.42

Show/hide

Query:  QGNLLAPVPVEPLQPPYPKWYDPHVHCDYHVGAVGHSTENCTSLKHKVQVLMKTGLV
        +  LLA  P+EPL+P +PKWYDP+ HCDYH G  GHSTENCT+LKHKVQVL+K GL+
Subjt:  QGNLLAPVPVEPLQPPYPKWYDPHVHCDYHVGAVGHSTENCTSLKHKVQVLMKTGLV

A0A061E2I6 RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein

3.3e-16

68.42

Show/hide

Query:  QGNLLAPVPVEPLQPPYPKWYDPHVHCDYHVGAVGHSTENCTSLKHKVQVLMKTGLV
        +  LLA  P+EPL+PP+PKWYDP+ HCDYH G  GHSTENCT+LKHKVQ L+K GL+
Subjt:  QGNLLAPVPVEPLQPPYPKWYDPHVHCDYHVGAVGHSTENCTSLKHKVQVLMKTGLV

A0A061ELG5 Gag-pro-like protein

3.3e-16

68.42

Show/hide

Query:  QGNLLAPVPVEPLQPPYPKWYDPHVHCDYHVGAVGHSTENCTSLKHKVQVLMKTGLV
        +  LLA  P+EPL+PP+PKWYDP+ HCDYH G  GHSTENCT+LKHKVQ L+K GL+
Subjt:  QGNLLAPVPVEPLQPPYPKWYDPHVHCDYHVGAVGHSTENCTSLKHKVQVLMKTGLV

A0A061FBD9 Uncharacterized protein

3.3e-16

68.42

Show/hide

Query:  QGNLLAPVPVEPLQPPYPKWYDPHVHCDYHVGAVGHSTENCTSLKHKVQVLMKTGLV
        +  LLA  P+EPL+PP+PKWYDP+ HCDYH G  GHSTENCT+LKHKVQ L+K GL+
Subjt:  QGNLLAPVPVEPLQPPYPKWYDPHVHCDYHVGAVGHSTENCTSLKHKVQVLMKTGLV

A0A6J1E2J7 Ribonuclease H

2.5e-16

69.09

Show/hide

Query:  QGNLLAPVPVEPLQPPYPKWYDPHVHCDYHVGAVGHSTENCTSLKHKVQVLMKTG
        Q N LAPVPV+P+QPPYP+WYD +  CDYH GA+GHSTENCT+LK++VQ L+K G
Subjt:  QGNLLAPVPVEPLQPPYPKWYDPHVHCDYHVGAVGHSTENCTSLKHKVQVLMKTG

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGAAGAATTTAATGCTGAGCTAAAGAAAATTAGAGACGAAATTCCCAAACGGGTCGTGGTGGAAGAATTGAATGTTGAGCTAAAGAAAATAAGAGACAAGATT
CAAGAACAGGTCATGGAGGTGCATAATGTAGAGCTAGAGAAGATGAGACAAGACATCAAGGGCTTCCCCAAGAATAATTTGTCACATAAAGCTCAGCTTTCCAAG
AAAGACCAACAAGCTCCTATAAACTGTCAGGGTAATCTATTAGCTCCCGTACCCGTAGAGCCATTACAACCACCTTATCCAAAGTGGTACGATCCACATGTTCAT
TGTGATTACCATGTAGGAGCTGTAGGTCATTCAACTGAGAACTGTACTTCACTGAAGCATAAAGTGCAAGTTCTAATGAAGACAGGGTTAGTGCTGCAACGGGTG
GCCTCGTGGGTGATTGGCATGCGTGCTGGGGCGTTGACCGTTGACATCAGGCGGACGCGCATTCTGGCAGGGCCGATGGCCTCTTGTGAGGATTACCACTGCTTG
TCTACTAGTAATTCTCTCCCAAGTGTTAAAGGTCATTACATTCGATACATCAAAAGATGTTATTCACTTTTGGCGGTAATTAGTTTGTTTGAATGGGCAATGAAG
CAAGCTGTTAATGCCATGCAGGATACCGATAAGAGAAAACACTCCGACGCCAAGTCAAGAAGAATCCGAGTTGTACTAGATAGAAAATACAGTGTTTGCGTACCT
TTGATAGAGGCAAATGGTTTCTATATATACGCAGGGTCTCTGACAGGATTCCTGATAAGGCCTCAACGGCCATTTAAGGTAAGCTTGAATCACGACATGCTATCG
TGGAGTTTGTCGGAATATGAGACTAAGCGAGACACATCTAGGTCAGTTCAAACAAAGAATGGGAACGGGACCAAAGGAAATCTTGGTCGGATCGGTCATAACGGC
ACCGGCTCGGAAGATAGTCGAAATACCTAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MEEFNAELKKIRDEIPKRVVVEELNVELKKIRDKIQEQVMEVHNVELEKMRQDIKGFPKNNLSHKAQLSKKDQQAPINCQGNLLAPVPVEPLQPPYPKWYDPHVH
CDYHVGAVGHSTENCTSLKHKVQVLMKTGLVLQRVASWVIGMRAGALTVDIRRTRILAGPMASCEDYHCLSTSNSLPSVKGHYIRYIKRCYSLLAVISLFEWAMK
QAVNAMQDTDKRKHSDAKSRRIRVVLDRKYSVCVPLIEANGFYIYAGSLTGFLIRPQRPFKVSLNHDMLSWSLSEYETKRDTSRSVQTKNGNGTKGNLGRIGHNG
TGSEDSRNT

Moc04g17140 (gene) of Bitter gourd (OHB3-1) v2 genome