; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc04g17230 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc04g17230
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr4:12713526..12714333
RNA-Seq ExpressionMoc04g17230
SyntenyMoc04g17230
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022135947.1 uncharacterized protein LOC111007781 [Momordica charantia]1.3e-1641.3Show/hide
Query:  GDKIEAHAFTSFRYGIRSLHFVRKMV-LPMKKGVEQEFSFIHQKERVSINQILEEFQAKNEKMARYLRKAKENLAKFKDFITRQVPRLENSNADALARLA
        G++ E   + +FR       +   +  L + KG+      +    ++ +NQI EE+QAK+ +M +YL K + +L +FK +   QVPRLENSNADALA+LA
Subjt:  GDKIEAHAFTSFRYGIRSLHFVRKMV-LPMKKGVEQEFSFIHQKERVSINQILEEFQAKNEKMARYLRKAKENLAKFKDFITRQVPRLENSNADALARLA

Query:  SAYETDLADTVPVEVLYSPSINEEEQCDVVARPHSGWI
        SAYETDLA +V VE+L +PSI E +  ++   P   WI
Subjt:  SAYETDLADTVPVEVLYSPSINEEEQCDVVARPHSGWI

XP_022136647.1 uncharacterized protein LOC111008302 [Momordica charantia]8.5e-1648.98Show/hide
Query:  IHQKERVSINQILEEFQAKNEKMARYLRKAKENLAKFKDFITRQVPRLENSNADALARLASAYETDLADTVPVEVLYSPSINEEEQCDVVARPHSGWI
        +    ++ ++QI EE+QAK+ +M +YL K + +LA+F+ +   +VPR ENSNADALA+LASAYET+LA +VPVE+L +PSI+E +  ++ A P S W+
Subjt:  IHQKERVSINQILEEFQAKNEKMARYLRKAKENLAKFKDFITRQVPRLENSNADALARLASAYETDLADTVPVEVLYSPSINEEEQCDVVARPHSGWI

XP_022149378.1 uncharacterized protein LOC111017809 [Momordica charantia]8.5e-1646.85Show/hide
Query:  LPMKKGVEQEFSFIHQKERVSINQILEEFQAKNEKMARYLRKAKENLAKFKDFITRQVPRLENSNADALARLASAYETDLADTVPVEVLYSPSINEEEQC
        L + KG+      +    ++ +NQI E++QAK+ +M +YL K + +LA+ K +   QVPR ENSNADALA+LASAYETDLA +VPVE+L +PSI E +  
Subjt:  LPMKKGVEQEFSFIHQKERVSINQILEEFQAKNEKMARYLRKAKENLAKFKDFITRQVPRLENSNADALARLASAYETDLADTVPVEVLYSPSINEEEQC

Query:  DVVARPHSGWI
        + V  P   W+
Subjt:  DVVARPHSGWI

XP_022150100.1 uncharacterized protein LOC111018362 [Momordica charantia]8.5e-1651.02Show/hide
Query:  IHQKERVSINQILEEFQAKNEKMARYLRKAKENLAKFKDFITRQVPRLENSNADALARLASAYETDLADTVPVEVLYSPSINEEEQCDVVARPHSGWI
        +    ++ +NQI EE+Q K+ +M +YL K + +LA+F+ +   QVPR ENSNADALA+LASAYETDLA +VPVE+L SPSI E +  + V  P   W+
Subjt:  IHQKERVSINQILEEFQAKNEKMARYLRKAKENLAKFKDFITRQVPRLENSNADALARLASAYETDLADTVPVEVLYSPSINEEEQCDVVARPHSGWI

XP_022157610.1 uncharacterized protein LOC111024267 [Momordica charantia]1.7e-1650Show/hide
Query:  LPMKKGVEQEFSFIHQKERVSINQILEEFQAKNEKMARYLRKAKENLAKFKDFITRQVPRLENSNADALARLASAYETDLADTVPVEVLYSPSINEEEQC
        L + KG+      +    ++ +NQI EE++AK+ +M +YL K + +LA+FK +   QVPRLENSN DALA+LASAYETDLA ++PVE+L +PSI E +  
Subjt:  LPMKKGVEQEFSFIHQKERVSINQILEEFQAKNEKMARYLRKAKENLAKFKDFITRQVPRLENSNADALARLASAYETDLADTVPVEVLYSPSINEEEQC

Query:  DVVA
        DV A
Subjt:  DVVA

TrEMBL top hitse value%identityAlignment
A0A6J1C472 uncharacterized protein LOC1110077816.4e-1741.3Show/hide
Query:  GDKIEAHAFTSFRYGIRSLHFVRKMV-LPMKKGVEQEFSFIHQKERVSINQILEEFQAKNEKMARYLRKAKENLAKFKDFITRQVPRLENSNADALARLA
        G++ E   + +FR       +   +  L + KG+      +    ++ +NQI EE+QAK+ +M +YL K + +L +FK +   QVPRLENSNADALA+LA
Subjt:  GDKIEAHAFTSFRYGIRSLHFVRKMV-LPMKKGVEQEFSFIHQKERVSINQILEEFQAKNEKMARYLRKAKENLAKFKDFITRQVPRLENSNADALARLA

Query:  SAYETDLADTVPVEVLYSPSINEEEQCDVVARPHSGWI
        SAYETDLA +V VE+L +PSI E +  ++   P   WI
Subjt:  SAYETDLADTVPVEVLYSPSINEEEQCDVVARPHSGWI

A0A6J1C617 Ribonuclease H4.1e-1648.98Show/hide
Query:  IHQKERVSINQILEEFQAKNEKMARYLRKAKENLAKFKDFITRQVPRLENSNADALARLASAYETDLADTVPVEVLYSPSINEEEQCDVVARPHSGWI
        +    ++ ++QI EE+QAK+ +M +YL K + +LA+F+ +   +VPR ENSNADALA+LASAYET+LA +VPVE+L +PSI+E +  ++ A P S W+
Subjt:  IHQKERVSINQILEEFQAKNEKMARYLRKAKENLAKFKDFITRQVPRLENSNADALARLASAYETDLADTVPVEVLYSPSINEEEQCDVVARPHSGWI

A0A6J1D6M1 Ribonuclease H4.1e-1646.85Show/hide
Query:  LPMKKGVEQEFSFIHQKERVSINQILEEFQAKNEKMARYLRKAKENLAKFKDFITRQVPRLENSNADALARLASAYETDLADTVPVEVLYSPSINEEEQC
        L + KG+      +    ++ +NQI E++QAK+ +M +YL K + +LA+ K +   QVPR ENSNADALA+LASAYETDLA +VPVE+L +PSI E +  
Subjt:  LPMKKGVEQEFSFIHQKERVSINQILEEFQAKNEKMARYLRKAKENLAKFKDFITRQVPRLENSNADALARLASAYETDLADTVPVEVLYSPSINEEEQC

Query:  DVVARPHSGWI
        + V  P   W+
Subjt:  DVVARPHSGWI

A0A6J1D7J6 Ribonuclease H4.1e-1651.02Show/hide
Query:  IHQKERVSINQILEEFQAKNEKMARYLRKAKENLAKFKDFITRQVPRLENSNADALARLASAYETDLADTVPVEVLYSPSINEEEQCDVVARPHSGWI
        +    ++ +NQI EE+Q K+ +M +YL K + +LA+F+ +   QVPR ENSNADALA+LASAYETDLA +VPVE+L SPSI E +  + V  P   W+
Subjt:  IHQKERVSINQILEEFQAKNEKMARYLRKAKENLAKFKDFITRQVPRLENSNADALARLASAYETDLADTVPVEVLYSPSINEEEQCDVVARPHSGWI

A0A6J1DTK4 uncharacterized protein LOC1110242678.3e-1750Show/hide
Query:  LPMKKGVEQEFSFIHQKERVSINQILEEFQAKNEKMARYLRKAKENLAKFKDFITRQVPRLENSNADALARLASAYETDLADTVPVEVLYSPSINEEEQC
        L + KG+      +    ++ +NQI EE++AK+ +M +YL K + +LA+FK +   QVPRLENSN DALA+LASAYETDLA ++PVE+L +PSI E +  
Subjt:  LPMKKGVEQEFSFIHQKERVSINQILEEFQAKNEKMARYLRKAKENLAKFKDFITRQVPRLENSNADALARLASAYETDLADTVPVEVLYSPSINEEEQC

Query:  DVVA
        DV A
Subjt:  DVVA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGACAAGATCGAAGCACACGCGTTTACAAGCTTTCGCTATGGGATCCGATCCCTTCACTTTGTACGTAAGATGGTTCTTCCAATGAAAAAGGGTGTGGAG
CAGGAATTCTCGTTCATTCACCAGAAGGAACGCGTTTCGATCAACCAGATATTGGAAGAATTCCAGGCGAAAAATGAGAAAATGGCCAGGTATTTACGAAAGGCG
AAAGAAAATCTAGCAAAATTTAAGGACTTTATAACTCGTCAAGTCCCCCGATTAGAGAACTCGAATGCAGACGCTTTAGCAAGATTGGCTTCCGCGTATGAAACC
GATCTCGCCGACACTGTACCCGTTGAAGTGCTGTATTCACCATCAATTAATGAAGAAGAACAGTGTGATGTTGTGGCACGACCCCATTCTGGGTGGATTCGATAG
mRNA sequenceShow/hide mRNA sequence
ATGGGAGACAAGATCGAAGCACACGCGTTTACAAGCTTTCGCTATGGGATCCGATCCCTTCACTTTGTACGTAAGATGGTTCTTCCAATGAAAAAGGGTGTGGAG
CAGGAATTCTCGTTCATTCACCAGAAGGAACGCGTTTCGATCAACCAGATATTGGAAGAATTCCAGGCGAAAAATGAGAAAATGGCCAGGTATTTACGAAAGGCG
AAAGAAAATCTAGCAAAATTTAAGGACTTTATAACTCGTCAAGTCCCCCGATTAGAGAACTCGAATGCAGACGCTTTAGCAAGATTGGCTTCCGCGTATGAAACC
GATCTCGCCGACACTGTACCCGTTGAAGTGCTGTATTCACCATCAATTAATGAAGAAGAACAGTGTGATGTTGTGGCACGACCCCATTCTGGGTGGATTCGATAG
Protein sequenceShow/hide protein sequence
MGDKIEAHAFTSFRYGIRSLHFVRKMVLPMKKGVEQEFSFIHQKERVSINQILEEFQAKNEKMARYLRKAKENLAKFKDFITRQVPRLENSNADALARLASAYET
DLADTVPVEVLYSPSINEEEQCDVVARPHSGWIR