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Moc04g17680 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc04g17680
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr4:13027711..13030601
RNA-Seq ExpressionMoc04g17680
SyntenyMoc04g17680
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022157920.1 uncharacterized protein LOC111024530 [Momordica charantia]2.5e-1253.42Show/hide
Query:  SSSKWVLNVVGSSNEKGSGARVLLQVPNGDSFEYAVRFNFPALNNEVEYETLVAGLCMVEAMRARHLDIRSDS
        S   W + V GSSNE+G GA +LL  P G+ FEYA+RFNF   NNE EYE L+AGL + + +RA H+ + SDS
Subjt:  SSSKWVLNVVGSSNEKGSGARVLLQVPNGDSFEYAVRFNFPALNNEVEYETLVAGLCMVEAMRARHLDIRSDS

XP_022158215.1 uncharacterized protein LOC111024751 [Momordica charantia]1.8e-1344.36Show/hide
Query:  REVLGGRASASLSGAVASESWGWSPGNPGVRPLVCSGEGTSSSKWVLNVVGSSNEKGSGARVLLQVPNGDSFEYAVRFNFPALNNEVEYETLVAGLCMVE
        R  L G+A+A     +       +P  PG         G    +W L V GSSNEKG GA +LL  P    FEYA+RF+F A NNE EYE L+ GL +  
Subjt:  REVLGGRASASLSGAVASESWGWSPGNPGVRPLVCSGEGTSSSKWVLNVVGSSNEKGSGARVLLQVPNGDSFEYAVRFNFPALNNEVEYETLVAGLCMVE

Query:  AMRARHLDIRSDS-LSQPGYREIPSQGQHDGEV
         M  R L I SDS L Q GYR +PS+G   GEV
Subjt:  AMRARHLDIRSDS-LSQPGYREIPSQGQHDGEV

XP_024027555.1 uncharacterized protein LOC112093419 [Morus notabilis]4.3e-1239.37Show/hide
Query:  KWVLNVVGSSNEKGSGARVLLQVPNGDSFEYAVRFNFPALNNEVEYETLVAGLCMVEAMRARHLDIRSDSLSQPGYREIPSQGQHDGEVLTQSARAIVSV
        +W L V GSSNE GSGAR++LQ P G      +RF FPA NNE EYETL+AGL + E ++  ++DI SD  SQ    ++  Q +   E +    + +   
Subjt:  KWVLNVVGSSNEKGSGARVLLQVPNGDSFEYAVRFNFPALNNEVEYETLVAGLCMVEAMRARHLDIRSDSLSQPGYREIPSQGQHDGEVLTQSARAIVSV

Query:  LRIGPSLDIRGSLHSRVGGNEYRNYDA
        L    + DI+     +V   E  N DA
Subjt:  LRIGPSLDIRGSLHSRVGGNEYRNYDA

XP_027166062.1 uncharacterized protein LOC113766031 [Coffea eugenioides]4.3e-1233.91Show/hide
Query:  EGTSSSKWVLNVVGSSNEKGSGARVLLQVPNGDSFEYAVRFNFPALNNEVEYETLVAGLCMVEAMRARHLDIRSDSLSQPGYREIPSQGQHDGEVLTQSA
        E ++S  W L V GSSN  GSGA +LL+ P G+   YA+RF FPA NNE EYE L+AGL +   + A+ + +RSD  SQ    ++  + +   E++ +  
Subjt:  EGTSSSKWVLNVVGSSNEKGSGARVLLQVPNGDSFEYAVRFNFPALNNEVEYETLVAGLCMVEAMRARHLDIRSDSLSQPGYREIPSQGQHDGEVLTQSA

Query:  RAIVSVLRIGPSLDIRGSLHSRVGGNEYRNYDA-------DLDGPHKAFLRGEEPPE-HADLKKTRRKATGYVL
          +  +     S +I+     R+  ++ R  DA            +K  L  E  PE  A+ +K +RKA  Y L
Subjt:  RAIVSVLRIGPSLDIRGSLHSRVGGNEYRNYDA-------DLDGPHKAFLRGEEPPE-HADLKKTRRKATGYVL

XP_027182223.1 uncharacterized protein LOC113780640 [Coffea eugenioides]8.8e-1349.41Show/hide
Query:  GVRPLVCSGEGTSSSKWVLNVVGSSNEKGSGARVLLQVPNGDSFEYAVRFNFPALNNEVEYETLVAGLCMVEAMRARHLDIRSDS
        G  P   + E ++S  W L V GSSN  GSGA +LL+ P G+ F YA+RF+FPA NNE EYE L+AGL +   + A+ + +RSDS
Subjt:  GVRPLVCSGEGTSSSKWVLNVVGSSNEKGSGARVLLQVPNGDSFEYAVRFNFPALNNEVEYETLVAGLCMVEAMRARHLDIRSDS

TrEMBL top hitse value%identityAlignment
A0A6J1DUD2 uncharacterized protein LOC1110245301.2e-1253.42Show/hide
Query:  SSSKWVLNVVGSSNEKGSGARVLLQVPNGDSFEYAVRFNFPALNNEVEYETLVAGLCMVEAMRARHLDIRSDS
        S   W + V GSSNE+G GA +LL  P G+ FEYA+RFNF   NNE EYE L+AGL + + +RA H+ + SDS
Subjt:  SSSKWVLNVVGSSNEKGSGARVLLQVPNGDSFEYAVRFNFPALNNEVEYETLVAGLCMVEAMRARHLDIRSDS

A0A6J1DV78 Ribonuclease H8.5e-1444.36Show/hide
Query:  REVLGGRASASLSGAVASESWGWSPGNPGVRPLVCSGEGTSSSKWVLNVVGSSNEKGSGARVLLQVPNGDSFEYAVRFNFPALNNEVEYETLVAGLCMVE
        R  L G+A+A     +       +P  PG         G    +W L V GSSNEKG GA +LL  P    FEYA+RF+F A NNE EYE L+ GL +  
Subjt:  REVLGGRASASLSGAVASESWGWSPGNPGVRPLVCSGEGTSSSKWVLNVVGSSNEKGSGARVLLQVPNGDSFEYAVRFNFPALNNEVEYETLVAGLCMVE

Query:  AMRARHLDIRSDS-LSQPGYREIPSQGQHDGEV
         M  R L I SDS L Q GYR +PS+G   GEV
Subjt:  AMRARHLDIRSDS-LSQPGYREIPSQGQHDGEV

A0A6P6SN45 Ribonuclease H6.1e-1252.63Show/hide
Query:  EGTSSSKWVLNVVGSSNEKGSGARVLLQVPNGDSFEYAVRFNFPALNNEVEYETLVAGLCMVEAMRARHLDIRSDS
        E +SS +W L V GSSN +GSGA +LL+ P G+   YA+RF FPA NNE EYE L+AGL +   + A+ + +RSDS
Subjt:  EGTSSSKWVLNVVGSSNEKGSGARVLLQVPNGDSFEYAVRFNFPALNNEVEYETLVAGLCMVEAMRARHLDIRSDS

A0A6P6TDJ2 Ribonuclease H4.7e-1252.63Show/hide
Query:  EGTSSSKWVLNVVGSSNEKGSGARVLLQVPNGDSFEYAVRFNFPALNNEVEYETLVAGLCMVEAMRARHLDIRSDS
        E ++ S W L V GSSN +GSGA +LL+ P G+   YA+RF FPA NNE EYETL+AGL +   + A+ + +RSDS
Subjt:  EGTSSSKWVLNVVGSSNEKGSGARVLLQVPNGDSFEYAVRFNFPALNNEVEYETLVAGLCMVEAMRARHLDIRSDS

A0A6P6XL93 Ribonuclease H3.6e-1233.51Show/hide
Query:  KWVLNVVGSSNEKGSGARVLLQVPNGDSFEYAVRFNFPALNNEVEYETLVAGLCMVEAMRARHLDIRSDSLSQPGYREIPSQGQHDGEVLTQSARAIVSV
        +W L+V GSSN +GSGA +LL+ P G+   YA+RF+F A NNEVEYE ++AGL +   + A H+ + SD  SQ    +I  + +   EV+ +    ++ +
Subjt:  KWVLNVVGSSNEKGSGARVLLQVPNGDSFEYAVRFNFPALNNEVEYETLVAGLCMVEAMRARHLDIRSDSLSQPGYREIPSQGQHDGEVLTQSARAIVSV

Query:  L---------RIGPSLDIRGSLHSRV-----------------------GGNEYRNYDADL-DGPHKAFL-RGEEPPEHADLKKTRRKATGYVL
        +         RI  S + R    SR+                       G   Y  Y  D   GP   FL RGE P + A+ +K +RKA  Y L
Subjt:  L---------RIGPSLDIRGSLHSRV-----------------------GGNEYRNYDADL-DGPHKAFL-RGEEPPEHADLKKTRRKATGYVL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTACTATTTTCATTGTTAGACATTATAAAAATGCATGACTTGTTATCGTTGGAGGGGACTGGTCTTTGGAACTATTGTGTTAGTGATTTTGTTTGGTATAATGAAAA
GCATGCTGGCAAATTGTGCTGTGAATTTAAGGGTGGAAGACGTGCTTATGGGATTGTCTTGGGAGGGTTAGTGGAAATTGCCAGGTGTGATGTGCTGGGACCAATACGCC
GGGCAGTCATCGGTACCTTGGGAATAAATGTCAAGGACTGGTGCACAGTTCAAGGCCTTGGGGATAAATGGCAAGGCCGAACGTCAAGCTTCTGTAGAGAAGTATTGGGG
GGTAGAGCGAGTGCTAGCTTAAGTGGGGCAGTGGCTAGTGAGTCGTGGGGTTGGAGTCCCGGAAATCCCGGCGTTAGGCCGCTTGTATGCTCGGGAGAAGGGACCTCCTC
AAGCAAGTGGGTCCTCAATGTTGTTGGTTCCTCTAACGAAAAAGGTAGTGGGGCAAGGGTCCTACTCCAGGTGCCCAACGGAGATAGCTTTGAATATGCGGTGAGATTCA
ACTTCCCAGCCTTGAATAATGAGGTCGAGTATGAGACGCTGGTGGCAGGTTTGTGTATGGTCGAAGCCATGAGAGCCAGACACTTGGACATAAGAAGCGACTCGCTTAGT
CAACCAGGTTACCGGGAAATACCAAGCCAAGGACAACATGATGGAGAGGTACTTACACAAAGTGCGCGAGCTATTGTCTCTGTTCTAAGGATCGGTCCCAGTCTAGATAT
TAGAGGCTCCCTCCATTCAAGGGTCGGAGGCAATGAATATCGAAACTACGACGCCGACCTGGATGGACCACATAAAGCCTTCCTCCGCGGAGAGGAGCCACCAGAACATG
CCGACCTCAAGAAGACGCGGCGCAAAGCAACAGGGTATGTCCTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTACTATTTTCATTGTTAGACATTATAAAAATGCATGACTTGTTATCGTTGGAGGGGACTGGTCTTTGGAACTATTGTGTTAGTGATTTTGTTTGGTATAATGAAAA
GCATGCTGGCAAATTGTGCTGTGAATTTAAGGGTGGAAGACGTGCTTATGGGATTGTCTTGGGAGGGTTAGTGGAAATTGCCAGGTGTGATGTGCTGGGACCAATACGCC
GGGCAGTCATCGGTACCTTGGGAATAAATGTCAAGGACTGGTGCACAGTTCAAGGCCTTGGGGATAAATGGCAAGGCCGAACGTCAAGCTTCTGTAGAGAAGTATTGGGG
GGTAGAGCGAGTGCTAGCTTAAGTGGGGCAGTGGCTAGTGAGTCGTGGGGTTGGAGTCCCGGAAATCCCGGCGTTAGGCCGCTTGTATGCTCGGGAGAAGGGACCTCCTC
AAGCAAGTGGGTCCTCAATGTTGTTGGTTCCTCTAACGAAAAAGGTAGTGGGGCAAGGGTCCTACTCCAGGTGCCCAACGGAGATAGCTTTGAATATGCGGTGAGATTCA
ACTTCCCAGCCTTGAATAATGAGGTCGAGTATGAGACGCTGGTGGCAGGTTTGTGTATGGTCGAAGCCATGAGAGCCAGACACTTGGACATAAGAAGCGACTCGCTTAGT
CAACCAGGTTACCGGGAAATACCAAGCCAAGGACAACATGATGGAGAGGTACTTACACAAAGTGCGCGAGCTATTGTCTCTGTTCTAAGGATCGGTCCCAGTCTAGATAT
TAGAGGCTCCCTCCATTCAAGGGTCGGAGGCAATGAATATCGAAACTACGACGCCGACCTGGATGGACCACATAAAGCCTTCCTCCGCGGAGAGGAGCCACCAGAACATG
CCGACCTCAAGAAGACGCGGCGCAAAGCAACAGGGTATGTCCTTTGA
Protein sequenceShow/hide protein sequence
MLLFSLLDIIKMHDLLSLEGTGLWNYCVSDFVWYNEKHAGKLCCEFKGGRRAYGIVLGGLVEIARCDVLGPIRRAVIGTLGINVKDWCTVQGLGDKWQGRTSSFCREVLG
GRASASLSGAVASESWGWSPGNPGVRPLVCSGEGTSSSKWVLNVVGSSNEKGSGARVLLQVPNGDSFEYAVRFNFPALNNEVEYETLVAGLCMVEAMRARHLDIRSDSLS
QPGYREIPSQGQHDGEVLTQSARAIVSVLRIGPSLDIRGSLHSRVGGNEYRNYDADLDGPHKAFLRGEEPPEHADLKKTRRKATGYVL