CuGenDBv2

Gene ID	Moc04g17770
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Gag/pol protein
Genome location	chr4:13065840..13066541
RNA-Seq Expression	Moc04g17770
Synteny	Moc04g17770
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]

2.9e-43

45.9

Show/hide

Query:  MVDDLRFILTEKYPQAPTPN------DAYDSWIKANDKAKVYILENIFDVLAKKHESVV----IIDSLQDMFGQPYILARHDALKFIYNFHMNEGTLVRE
        ++DDLRF+L E+ PQ P  N      + Y+ W KAN+KA+ YIL ++ +VLAKKHES++    I+DSLQ+MFGQ     +HDALK+IYN  MNEG  VRE
Subjt:  MVDDLRFILTEKYPQAPTPN------DAYDSWIKANDKAKVYILENIFDVLAKKHESVV----IIDSLQDMFGQPYILARHDALKFIYNFHMNEGTLVRE

Query:  HVLNLMVSFNVAEVNDTGIDEKSQVCFILESLLKSFLQFCSN------------------------------------------------GTKPVPSYSG
        HVLN+MV FNVAE+N   IDE SQV FILESL +SFLQF SN                                                GTK +PS SG
Subjt:  HVLNLMVSFNVAEVNDTGIDEKSQVCFILESLLKSFLQFCSN------------------------------------------------GTKPVPSYSG

Query:  RKTFKKKNSGKGVKADPTPIAATKKGKLKVAEKEKCFHCNVDGH
         K +KKK  G+G KA+      TKK K   A K  CFHCN +GH
Subjt:  RKTFKKKNSGKGVKADPTPIAATKKGKLKVAEKEKCFHCNVDGH

KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]

2.9e-43

45.9

Show/hide

Query:  MVDDLRFILTEKYPQAPTPN------DAYDSWIKANDKAKVYILENIFDVLAKKHESVV----IIDSLQDMFGQPYILARHDALKFIYNFHMNEGTLVRE
        ++DDLRF+L E+ PQ P  N      + Y+ W KAN+KA+ YIL ++ +VLAKKHES++    I+DSLQ+MFGQ     +HDALK+IYN  MNEG  VRE
Subjt:  MVDDLRFILTEKYPQAPTPN------DAYDSWIKANDKAKVYILENIFDVLAKKHESVV----IIDSLQDMFGQPYILARHDALKFIYNFHMNEGTLVRE

Query:  HVLNLMVSFNVAEVNDTGIDEKSQVCFILESLLKSFLQFCSN------------------------------------------------GTKPVPSYSG
        HVLN+MV FNVAE+N   IDE SQV FILESL +SFLQF SN                                                GTK +PS SG
Subjt:  HVLNLMVSFNVAEVNDTGIDEKSQVCFILESLLKSFLQFCSN------------------------------------------------GTKPVPSYSG

Query:  RKTFKKKNSGKGVKADPTPIAATKKGKLKVAEKEKCFHCNVDGH
         K +KKK  G+G KA+      TKK K   A K  CFHCN +GH
Subjt:  RKTFKKKNSGKGVKADPTPIAATKKGKLKVAEKEKCFHCNVDGH

KAA0050670.1 gag/pol protein [Cucumis melo var. makuwa]

2.9e-43

45.9

Show/hide

Query:  MVDDLRFILTEKYPQAPTPN------DAYDSWIKANDKAKVYILENIFDVLAKKHESVV----IIDSLQDMFGQPYILARHDALKFIYNFHMNEGTLVRE
        ++DDLRF+L E+ PQ P  N      + Y+ W KAN+KA+ YIL +  +VLAKKHES++    I+DSLQ+MFGQ     +HDAL +IYN  MNEG  VRE
Subjt:  MVDDLRFILTEKYPQAPTPN------DAYDSWIKANDKAKVYILENIFDVLAKKHESVV----IIDSLQDMFGQPYILARHDALKFIYNFHMNEGTLVRE

Query:  HVLNLMVSFNVAEVNDTGIDEKSQVCFILESLLKSFLQFCSN------------------------------------------------GTKPVPSYSG
        HVLN+MV FNVAE+N   IDE SQV FILESLL+SFLQF SN                                                GTK +PS SG
Subjt:  HVLNLMVSFNVAEVNDTGIDEKSQVCFILESLLKSFLQFCSN------------------------------------------------GTKPVPSYSG

Query:  RKTFKKKNSGKGVKADPTPIAATKKGKLKVAEKEKCFHCNVDGH
         K +KKK  G+G KA+      TKK K   A K  CFHCN +GH
Subjt:  RKTFKKKNSGKGVKADPTPIAATKKGKLKVAEKEKCFHCNVDGH

KAA0051952.1 gag/pol protein [Cucumis melo var. makuwa]

2.9e-43

45.9

Show/hide

Query:  MVDDLRFILTEKYPQAPTPN------DAYDSWIKANDKAKVYILENIFDVLAKKHESVV----IIDSLQDMFGQPYILARHDALKFIYNFHMNEGTLVRE
        ++DDLRF+L E+ PQ P  N      + Y+ W KAN+KA+ YIL ++ +VLAKKHES++    I+DSLQ+MFGQ     +HDALK+IYN  MNEG  VRE
Subjt:  MVDDLRFILTEKYPQAPTPN------DAYDSWIKANDKAKVYILENIFDVLAKKHESVV----IIDSLQDMFGQPYILARHDALKFIYNFHMNEGTLVRE

Query:  HVLNLMVSFNVAEVNDTGIDEKSQVCFILESLLKSFLQFCSN------------------------------------------------GTKPVPSYSG
        HVLN+MV FNVAE+N   IDE SQV FILESL +SFLQF SN                                                GTK +PS SG
Subjt:  HVLNLMVSFNVAEVNDTGIDEKSQVCFILESLLKSFLQFCSN------------------------------------------------GTKPVPSYSG

Query:  RKTFKKKNSGKGVKADPTPIAATKKGKLKVAEKEKCFHCNVDGH
         K +KKK  G+G KA+      TKK K   A K  CFHCN +GH
Subjt:  RKTFKKKNSGKGVKADPTPIAATKKGKLKVAEKEKCFHCNVDGH

KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa]

2.9e-43

45.9

Show/hide

Query:  MVDDLRFILTEKYPQAPTPN------DAYDSWIKANDKAKVYILENIFDVLAKKHESVV----IIDSLQDMFGQPYILARHDALKFIYNFHMNEGTLVRE
        ++DDLRF+L E+ PQ P  N      + Y+ W KAN+KA+ YIL ++ +VLAKKHES++    I+DSLQ+MFGQ     +HDALK+IYN  MNEG  VRE
Subjt:  MVDDLRFILTEKYPQAPTPN------DAYDSWIKANDKAKVYILENIFDVLAKKHESVV----IIDSLQDMFGQPYILARHDALKFIYNFHMNEGTLVRE

Query:  HVLNLMVSFNVAEVNDTGIDEKSQVCFILESLLKSFLQFCSN------------------------------------------------GTKPVPSYSG
        HVLN+MV FNVAE+N   IDE SQV FILESL +SFLQF SN                                                GTK +PS SG
Subjt:  HVLNLMVSFNVAEVNDTGIDEKSQVCFILESLLKSFLQFCSN------------------------------------------------GTKPVPSYSG

Query:  RKTFKKKNSGKGVKADPTPIAATKKGKLKVAEKEKCFHCNVDGH
         K +KKK  G+G KA+      TKK K   A K  CFHCN +GH
Subjt:  RKTFKKKNSGKGVKADPTPIAATKKGKLKVAEKEKCFHCNVDGH

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SMH8 Gag/pol protein

1.4e-43

45.9

Show/hide

Query:  MVDDLRFILTEKYPQAPTPN------DAYDSWIKANDKAKVYILENIFDVLAKKHESVV----IIDSLQDMFGQPYILARHDALKFIYNFHMNEGTLVRE
        ++DDLRF+L E+ PQ P  N      + Y+ W KAN+KA+ YIL ++ +VLAKKHES++    I+DSLQ+MFGQ     +HDALK+IYN  MNEG  VRE
Subjt:  MVDDLRFILTEKYPQAPTPN------DAYDSWIKANDKAKVYILENIFDVLAKKHESVV----IIDSLQDMFGQPYILARHDALKFIYNFHMNEGTLVRE

Query:  HVLNLMVSFNVAEVNDTGIDEKSQVCFILESLLKSFLQFCSN------------------------------------------------GTKPVPSYSG
        HVLN+MV FNVAE+N   IDE SQV FILESL +SFLQF SN                                                GTK +PS SG
Subjt:  HVLNLMVSFNVAEVNDTGIDEKSQVCFILESLLKSFLQFCSN------------------------------------------------GTKPVPSYSG

Query:  RKTFKKKNSGKGVKADPTPIAATKKGKLKVAEKEKCFHCNVDGH
         K +KKK  G+G KA+      TKK K   A K  CFHCN +GH
Subjt:  RKTFKKKNSGKGVKADPTPIAATKKGKLKVAEKEKCFHCNVDGH

A0A5A7TU93 Gag/pol protein

1.4e-43

45.9

Show/hide

Query:  MVDDLRFILTEKYPQAPTPN------DAYDSWIKANDKAKVYILENIFDVLAKKHESVV----IIDSLQDMFGQPYILARHDALKFIYNFHMNEGTLVRE
        ++DDLRF+L E+ PQ P  N      + Y+ W KAN+KA+ YIL ++ +VLAKKHES++    I+DSLQ+MFGQ     +HDALK+IYN  MNEG  VRE
Subjt:  MVDDLRFILTEKYPQAPTPN------DAYDSWIKANDKAKVYILENIFDVLAKKHESVV----IIDSLQDMFGQPYILARHDALKFIYNFHMNEGTLVRE

Query:  HVLNLMVSFNVAEVNDTGIDEKSQVCFILESLLKSFLQFCSN------------------------------------------------GTKPVPSYSG
        HVLN+MV FNVAE+N   IDE SQV FILESL +SFLQF SN                                                GTK +PS SG
Subjt:  HVLNLMVSFNVAEVNDTGIDEKSQVCFILESLLKSFLQFCSN------------------------------------------------GTKPVPSYSG

Query:  RKTFKKKNSGKGVKADPTPIAATKKGKLKVAEKEKCFHCNVDGH
         K +KKK  G+G KA+      TKK K   A K  CFHCN +GH
Subjt:  RKTFKKKNSGKGVKADPTPIAATKKGKLKVAEKEKCFHCNVDGH

A0A5A7TWB9 Gag/pol protein

1.4e-43

45.9

Show/hide

Query:  MVDDLRFILTEKYPQAPTPN------DAYDSWIKANDKAKVYILENIFDVLAKKHESVV----IIDSLQDMFGQPYILARHDALKFIYNFHMNEGTLVRE
        ++DDLRF+L E+ PQ P  N      + Y+ W KAN+KA+ YIL ++ +VLAKKHES++    I+DSLQ+MFGQ     +HDALK+IYN  MNEG  VRE
Subjt:  MVDDLRFILTEKYPQAPTPN------DAYDSWIKANDKAKVYILENIFDVLAKKHESVV----IIDSLQDMFGQPYILARHDALKFIYNFHMNEGTLVRE

Query:  HVLNLMVSFNVAEVNDTGIDEKSQVCFILESLLKSFLQFCSN------------------------------------------------GTKPVPSYSG
        HVLN+MV FNVAE+N   IDE SQV FILESL +SFLQF SN                                                GTK +PS SG
Subjt:  HVLNLMVSFNVAEVNDTGIDEKSQVCFILESLLKSFLQFCSN------------------------------------------------GTKPVPSYSG

Query:  RKTFKKKNSGKGVKADPTPIAATKKGKLKVAEKEKCFHCNVDGH
         K +KKK  G+G KA+      TKK K   A K  CFHCN +GH
Subjt:  RKTFKKKNSGKGVKADPTPIAATKKGKLKVAEKEKCFHCNVDGH

A0A5A7TZD7 Gag/pol protein

1.4e-43

45.9

Show/hide

Query:  MVDDLRFILTEKYPQAPTPN------DAYDSWIKANDKAKVYILENIFDVLAKKHESVV----IIDSLQDMFGQPYILARHDALKFIYNFHMNEGTLVRE
        ++DDLRF+L E+ PQ P  N      + Y+ W KAN+KA+ YIL ++ +VLAKKHES++    I+DSLQ+MFGQ     +HDALK+IYN  MNEG  VRE
Subjt:  MVDDLRFILTEKYPQAPTPN------DAYDSWIKANDKAKVYILENIFDVLAKKHESVV----IIDSLQDMFGQPYILARHDALKFIYNFHMNEGTLVRE

Query:  HVLNLMVSFNVAEVNDTGIDEKSQVCFILESLLKSFLQFCSN------------------------------------------------GTKPVPSYSG
        HVLN+MV FNVAE+N   IDE SQV FILESL +SFLQF SN                                                GTK +PS SG
Subjt:  HVLNLMVSFNVAEVNDTGIDEKSQVCFILESLLKSFLQFCSN------------------------------------------------GTKPVPSYSG

Query:  RKTFKKKNSGKGVKADPTPIAATKKGKLKVAEKEKCFHCNVDGH
         K +KKK  G+G KA+      TKK K   A K  CFHCN +GH
Subjt:  RKTFKKKNSGKGVKADPTPIAATKKGKLKVAEKEKCFHCNVDGH

A0A5A7U869 Gag/pol protein

1.4e-43

45.9

Show/hide

Query:  MVDDLRFILTEKYPQAPTPN------DAYDSWIKANDKAKVYILENIFDVLAKKHESVV----IIDSLQDMFGQPYILARHDALKFIYNFHMNEGTLVRE
        ++DDLRF+L E+ PQ P  N      + Y+ W KAN+KA+ YIL ++ +VLAKKHES++    I+DSLQ+MFGQ     +HDALK+IYN  MNEG  VRE
Subjt:  MVDDLRFILTEKYPQAPTPN------DAYDSWIKANDKAKVYILENIFDVLAKKHESVV----IIDSLQDMFGQPYILARHDALKFIYNFHMNEGTLVRE

Query:  HVLNLMVSFNVAEVNDTGIDEKSQVCFILESLLKSFLQFCSN------------------------------------------------GTKPVPSYSG
        HVLN+MV FNVAE+N   IDE SQV FILESL +SFLQF SN                                                GTK +PS SG
Subjt:  HVLNLMVSFNVAEVNDTGIDEKSQVCFILESLLKSFLQFCSN------------------------------------------------GTKPVPSYSG

Query:  RKTFKKKNSGKGVKADPTPIAATKKGKLKVAEKEKCFHCNVDGH
         K +KKK  G+G KA+      TKK K   A K  CFHCN +GH
Subjt:  RKTFKKKNSGKGVKADPTPIAATKKGKLKVAEKEKCFHCNVDGH

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGTAGATGATCTTAGGTTCATCTTAACTGAGAAGTATCCTCAGGCTCCCACGCCTAATGATGCCTATGACAGTTGGATCAAGGCCAATGACAAGGCCAAGGTCTACAT
CTTGGAAAACATATTTGATGTGCTGGCAAAGAAGCATGAGAGCGTGGTGATCATTGACTCTTTGCAGGACATGTTTGGACAACCGTACATTCTAGCCCGGCACGATGCCC
TCAAGTTCATTTACAATTTCCACATGAACGAGGGAACATTAGTGCGAGAACATGTTCTTAATTTGATGGTCAGCTTTAATGTGGCTGAAGTGAACGACACTGGCATAGAC
GAGAAAAGCCAAGTCTGCTTTATCTTGGAATCTCTTCTGAAGAGTTTTCTACAGTTTTGCAGCAATGGAACCAAACCTGTACCTTCTTATTCTGGAAGAAAGACTTTCAA
GAAGAAGAACAGTGGTAAGGGGGTGAAAGCTGACCCTACTCCTATTGCTGCAACCAAGAAAGGCAAGCTCAAAGTTGCAGAAAAAGAAAAATGTTTCCATTGCAACGTGG
ATGGGCACTGA

mRNA sequence

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Protein sequence

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MVDDLRFILTEKYPQAPTPNDAYDSWIKANDKAKVYILENIFDVLAKKHESVVIIDSLQDMFGQPYILARHDALKFIYNFHMNEGTLVREHVLNLMVSFNVAEVNDTGID
EKSQVCFILESLLKSFLQFCSNGTKPVPSYSGRKTFKKKNSGKGVKADPTPIAATKKGKLKVAEKEKCFHCNVDGH

Moc04g17770 (gene) of Bitter gourd (OHB3-1) v2 genome