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Moc04g19040 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc04g19040
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrotransposon gag protein
Genome locationchr4:13936376..13951615
RNA-Seq ExpressionMoc04g19040
SyntenyMoc04g19040
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_015387726.1 uncharacterized protein LOC107177802 [Citrus sinensis]4.4e-0871.74Show/hide
Query:  IETFYNGLNEATRMVVDASANGALLSKSYVEAVDILERISFKNYHC
        +ET YNGLN++TR++VDASANGALLSKSY EA ++LERIS  NY C
Subjt:  IETFYNGLNEATRMVVDASANGALLSKSYVEAVDILERISFKNYHC

XP_022153147.1 probable serine/threonine-protein kinase PBL11 [Momordica charantia]1.9e-1948.55Show/hide
Query:  PNPVVEGDNGGKVVVPAAIPPLNAIMLADDGERVIRTYAAPAFHGFH---------------------------------------------SIETFYNG
        PNP+VE      VVVPAA P LN I+LADDGER IR YAA   H FH                                              I+ FYNG
Subjt:  PNPVVEGDNGGKVVVPAAIPPLNAIMLADDGERVIRTYAAPAFHGFH---------------------------------------------SIETFYNG

Query:  LNEATRMVVDASANGALLSKSYVEAVDILERISFKNYH
        L+EATR+VVDASAN ALLSKSYVEA+DILERIS  NYH
Subjt:  LNEATRMVVDASANGALLSKSYVEAVDILERISFKNYH

XP_022158490.1 uncharacterized protein LOC111024970 [Momordica charantia]7.3e-1175.51Show/hide
Query:  PNPVVEGDNGGKVVVPAAIPPLNAIMLADDGERVIRTYAAPAFHGFHSI
        PNPVVEG N G+VVV AA PPLN I+L DDGERVIR YAAPA HGFH +
Subjt:  PNPVVEGDNGGKVVVPAAIPPLNAIMLADDGERVIRTYAAPAFHGFHSI

XP_030505532.1 uncharacterized protein LOC115720524 [Cannabis sativa]1.2e-0841.59Show/hide
Query:  DGERVIRTYAAPAFHGFH-----------SIETFYNGLNEATRMVVDASANGALLSKSYVEAVDILERISFKNYHCLVENMTTATASSASLRT----NKD
        D  R IR YAAP F+  +            +ETFYNGLN A+RMV+DASANGA+LSKSY EA +ILE I+  NY        T+   +  L      N  
Subjt:  DGERVIRTYAAPAFHGFH-----------SIETFYNGLNEATRMVVDASANGALLSKSYVEAVDILERISFKNYHCLVENMTTATASSASLRT----NKD

Query:  DVIPQEEPQAEEV
        ++ P    Q+++V
Subjt:  DVIPQEEPQAEEV

XP_030509265.1 uncharacterized protein LOC115723943 [Cannabis sativa]8.9e-0937.75Show/hide
Query:  LNAIMLADDGERVIRTYAAPAF------------------------------------------HGF-HSI--ETFYNGLNEATRMVVDASANGALLSKS
        +N I+LADD  R IR YAAP F                                          HG  H I  ETFYNGLN A+RMV+DASANGA+LSKS
Subjt:  LNAIMLADDGERVIRTYAAPAF------------------------------------------HGF-HSI--ETFYNGLNEATRMVVDASANGALLSKS

Query:  YVEAVDILERISFKNYH---------------CLVENMTTATASSASLRTN
        Y EA +ILE I+  NY                  V+ +T  TA  AS+  N
Subjt:  YVEAVDILERISFKNYH---------------CLVENMTTATASSASLRTN

TrEMBL top hitse value%identityAlignment
A0A5B6VWJ0 Retroelement pol polyprotein-like3.1e-0775Show/hide
Query:  IETFYNGLNEATRMVVDASANGALLSKSYVEAVDILERISFKNY
        +ETFYNGL   TRMVVDASANGALLSKSY EA +I+ERI+  NY
Subjt:  IETFYNGLNEATRMVVDASANGALLSKSYVEAVDILERISFKNY

A0A5B6X0P0 Retrotransposon gag protein6.9e-0772.73Show/hide
Query:  IETFYNGLNEATRMVVDASANGALLSKSYVEAVDILERISFKNY
        +E FYNGLN  TR+VVDASANGALLSKSY EA +I+ERI+  NY
Subjt:  IETFYNGLNEATRMVVDASANGALLSKSYVEAVDILERISFKNY

A0A6J1DI54 probable serine/threonine-protein kinase PBL119.2e-2048.55Show/hide
Query:  PNPVVEGDNGGKVVVPAAIPPLNAIMLADDGERVIRTYAAPAFHGFH---------------------------------------------SIETFYNG
        PNP+VE      VVVPAA P LN I+LADDGER IR YAA   H FH                                              I+ FYNG
Subjt:  PNPVVEGDNGGKVVVPAAIPPLNAIMLADDGERVIRTYAAPAFHGFH---------------------------------------------SIETFYNG

Query:  LNEATRMVVDASANGALLSKSYVEAVDILERISFKNYH
        L+EATR+VVDASAN ALLSKSYVEA+DILERIS  NYH
Subjt:  LNEATRMVVDASANGALLSKSYVEAVDILERISFKNYH

A0A6J1DVZ9 uncharacterized protein LOC1110249703.5e-1175.51Show/hide
Query:  PNPVVEGDNGGKVVVPAAIPPLNAIMLADDGERVIRTYAAPAFHGFHSI
        PNPVVEG N G+VVV AA PPLN I+L DDGERVIR YAAPA HGFH +
Subjt:  PNPVVEGDNGGKVVVPAAIPPLNAIMLADDGERVIRTYAAPAFHGFHSI

A0A6J1G7Q6 uncharacterized protein LOC1114515986.9e-0754.41Show/hide
Query:  LADDGERVIRTYAAPAFHGFH---SIETFYNGLNEATRMVVDASANGALLSKSYVEAVDILERISFKN
        L++  ER   T      HG      IETFYNGLN AT+ VVDASANG +LSK+Y EA +ILERI+  N
Subjt:  LADDGERVIRTYAAPAFHGFH---SIETFYNGLNEATRMVVDASANGALLSKSYVEAVDILERISFKN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGCTGTCGAAGAACAGTAGGCAATGTTGCAGCACTGTGCTGCAGCGCCGTAGCGCTGTCCCGGGTGTTTTCCGACGTGGTTCCACTGTCCAGGTTTGTAAAGAAAT
GATAAAGTTGAAAGAAAGTGTTGAACCAGAGAAGAGCAGTCAGGGTATTTTCAAGAACAGAGCATGTGAAAGCTGGAGCAAAGCAGTGCTAGAGCATGAAGTTACTGCAC
AGTGGATGCATGATTTGCAGGGGCTGGAATTCCCCAATCCAGTAGTTGAAGGAGATAATGGAGGGAAAGTGGTTGTACCAGCAGCTATTCCTCCCCTCAATGCCATTATG
TTGGCGGATGATGGAGAAAGAGTTATTAGAACCTACGCTGCGCCCGCATTTCATGGTTTTCATTCAATAGAAACCTTTTACAACGGGCTAAATGAAGCAACCAGAATGGT
AGTTGATGCATCAGCGAATGGGGCATTATTGTCCAAGTCATATGTGGAAGCAGTTGATATTCTGGAGAGGATTTCTTTCAAGAACTACCATTGTCTGGTAGAGAACATGA
CTACTGCTACAGCATCATCAGCTAGTCTAAGAACAAATAAGGATGATGTGATACCACAAGAGGAACCTCAAGCAGAAGAAGTTATAGAGAATGTCGTAGAGAATATAACC
GTCGATGAGAACATGGATGCTGCTGGGGTCTTCGTACTGGAACCTAAGCTAGAGCAGGAACAAAAACAGTCACTGCCCGCAAGCGGATGCTGTAGCACAAAACTAGATGA
AAACGAAGAGAGGGGCTCCACGGGCTATATAGAACTGCTCTTGCTCTCTTCGTTTTTCGAGCCACTGTCCGCCTTAGCCTCTGCATTTTCCGAACTGGATGTGTGCTCCA
GCAAATCTTCCATTGTACGGCGTTGTGCAGAGGGGCCTGCAACTTCCGACCTGGCTATTCCTTATAGGAGGCTCTTGAGTTCAGTGTCGCGAGCTCATCTTGCTGAAGCC
TCCAGATTGGAACGGAGGTGGAGAAGCTTTATTGATCTCTTTGGGGCTCTAGACAACCTCTACTTCTTGCACCATTGTTCGTCCAATGCTGTCGGGACGAAGGTTCGCAT
AAAACTCCTTTACCAGATGCGGAATCAATGGGCCAGGGGGAGCACAAAAGTATTCCTACTTGTTTCTGCCTGTGTACTGAACCTCTTGAATGCAGTATCCAGGGGAGCAA
CGACATTAGCTCTTTTGCGCTCCGGTGGAAGCTACAAAGTAGTGACCTGCATAGACAAGACAGAAGGATGCCGCTTCCTCTCAGATGAGGACGCGGTCTTTAGCGTCTTA
CCTTCGATGGGGCCCTTAGATGCAGAAGTAGAGGGGCCATCAGCGGCCTTTGGAGGTTTTACAGCGGTGGCGGCCTTTGCTTTTTTAGAGGCTAGGCTTTTAGAGGCGGA
CTCGCTTGGTCGTTTAGCAGTTCAAGTGCGGGAAGCTAGGCCAGAGAAAGACAGTTGCATGGCGGTTGTTGGTGAGGCGACTGGAATAGGCGAAGGTGGTGGAGCAGTAA
TTGTACGAGATGGCCTGACTGGGGCTAAATACGAATCCTCCATAGTTGGCAGCTTAGCAGGAGATGTGACTAGCTTTTCGACGGTTTCCGCCTCCATCGACTGGTCTCAC
ATGCCGTCGTGGTCTTCCAACGAGCTTTCTGATAGGGGCAGTTCTTCTAACTTCTTGCGGTTGGCCTTTTTGCTTGATACGAGGCATGGTGTCTACTATAGACGGTTGGG
GTTCTCAAATGAGTGGATGCAATGTCTTTTAAGGACAGAGGGACTAGGGCTTCCAGCAGAACGGTTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTGCTGTCGAAGAACAGTAGGCAATGTTGCAGCACTGTGCTGCAGCGCCGTAGCGCTGTCCCGGGTGTTTTCCGACGTGGTTCCACTGTCCAGGTTTGTAAAGAAAT
GATAAAGTTGAAAGAAAGTGTTGAACCAGAGAAGAGCAGTCAGGGTATTTTCAAGAACAGAGCATGTGAAAGCTGGAGCAAAGCAGTGCTAGAGCATGAAGTTACTGCAC
AGTGGATGCATGATTTGCAGGGGCTGGAATTCCCCAATCCAGTAGTTGAAGGAGATAATGGAGGGAAAGTGGTTGTACCAGCAGCTATTCCTCCCCTCAATGCCATTATG
TTGGCGGATGATGGAGAAAGAGTTATTAGAACCTACGCTGCGCCCGCATTTCATGGTTTTCATTCAATAGAAACCTTTTACAACGGGCTAAATGAAGCAACCAGAATGGT
AGTTGATGCATCAGCGAATGGGGCATTATTGTCCAAGTCATATGTGGAAGCAGTTGATATTCTGGAGAGGATTTCTTTCAAGAACTACCATTGTCTGGTAGAGAACATGA
CTACTGCTACAGCATCATCAGCTAGTCTAAGAACAAATAAGGATGATGTGATACCACAAGAGGAACCTCAAGCAGAAGAAGTTATAGAGAATGTCGTAGAGAATATAACC
GTCGATGAGAACATGGATGCTGCTGGGGTCTTCGTACTGGAACCTAAGCTAGAGCAGGAACAAAAACAGTCACTGCCCGCAAGCGGATGCTGTAGCACAAAACTAGATGA
AAACGAAGAGAGGGGCTCCACGGGCTATATAGAACTGCTCTTGCTCTCTTCGTTTTTCGAGCCACTGTCCGCCTTAGCCTCTGCATTTTCCGAACTGGATGTGTGCTCCA
GCAAATCTTCCATTGTACGGCGTTGTGCAGAGGGGCCTGCAACTTCCGACCTGGCTATTCCTTATAGGAGGCTCTTGAGTTCAGTGTCGCGAGCTCATCTTGCTGAAGCC
TCCAGATTGGAACGGAGGTGGAGAAGCTTTATTGATCTCTTTGGGGCTCTAGACAACCTCTACTTCTTGCACCATTGTTCGTCCAATGCTGTCGGGACGAAGGTTCGCAT
AAAACTCCTTTACCAGATGCGGAATCAATGGGCCAGGGGGAGCACAAAAGTATTCCTACTTGTTTCTGCCTGTGTACTGAACCTCTTGAATGCAGTATCCAGGGGAGCAA
CGACATTAGCTCTTTTGCGCTCCGGTGGAAGCTACAAAGTAGTGACCTGCATAGACAAGACAGAAGGATGCCGCTTCCTCTCAGATGAGGACGCGGTCTTTAGCGTCTTA
CCTTCGATGGGGCCCTTAGATGCAGAAGTAGAGGGGCCATCAGCGGCCTTTGGAGGTTTTACAGCGGTGGCGGCCTTTGCTTTTTTAGAGGCTAGGCTTTTAGAGGCGGA
CTCGCTTGGTCGTTTAGCAGTTCAAGTGCGGGAAGCTAGGCCAGAGAAAGACAGTTGCATGGCGGTTGTTGGTGAGGCGACTGGAATAGGCGAAGGTGGTGGAGCAGTAA
TTGTACGAGATGGCCTGACTGGGGCTAAATACGAATCCTCCATAGTTGGCAGCTTAGCAGGAGATGTGACTAGCTTTTCGACGGTTTCCGCCTCCATCGACTGGTCTCAC
ATGCCGTCGTGGTCTTCCAACGAGCTTTCTGATAGGGGCAGTTCTTCTAACTTCTTGCGGTTGGCCTTTTTGCTTGATACGAGGCATGGTGTCTACTATAGACGGTTGGG
GTTCTCAAATGAGTGGATGCAATGTCTTTTAAGGACAGAGGGACTAGGGCTTCCAGCAGAACGGTTTTAA
Protein sequenceShow/hide protein sequence
MVLSKNSRQCCSTVLQRRSAVPGVFRRGSTVQVCKEMIKLKESVEPEKSSQGIFKNRACESWSKAVLEHEVTAQWMHDLQGLEFPNPVVEGDNGGKVVVPAAIPPLNAIM
LADDGERVIRTYAAPAFHGFHSIETFYNGLNEATRMVVDASANGALLSKSYVEAVDILERISFKNYHCLVENMTTATASSASLRTNKDDVIPQEEPQAEEVIENVVENIT
VDENMDAAGVFVLEPKLEQEQKQSLPASGCCSTKLDENEERGSTGYIELLLLSSFFEPLSALASAFSELDVCSSKSSIVRRCAEGPATSDLAIPYRRLLSSVSRAHLAEA
SRLERRWRSFIDLFGALDNLYFLHHCSSNAVGTKVRIKLLYQMRNQWARGSTKVFLLVSACVLNLLNAVSRGATTLALLRSGGSYKVVTCIDKTEGCRFLSDEDAVFSVL
PSMGPLDAEVEGPSAAFGGFTAVAAFAFLEARLLEADSLGRLAVQVREARPEKDSCMAVVGEATGIGEGGGAVIVRDGLTGAKYESSIVGSLAGDVTSFSTVSASIDWSH
MPSWSSNELSDRGSSSNFLRLAFLLDTRHGVYYRRLGFSNEWMQCLLRTEGLGLPAERF