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Moc04g20170 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc04g20170
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionReverse transcriptase
Genome locationchr4:14694923..14695983
RNA-Seq ExpressionMoc04g20170
SyntenyMoc04g20170
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143639.1 uncharacterized protein LOC111013500 [Momordica charantia]4.1e-1570.27Show/hide
Query:  MKVIDEQVTFNVLDVMRLPDEVEDCSAIGAIIEELQEMIVEGLEAD--------------FEHFEFLQPTIAYL
        MKV DEQ+TFNVLDV RLPDEVEDCSAIGAI+EELQEMIVE LEAD              FEHFE  QPTIA L
Subjt:  MKVIDEQVTFNVLDVMRLPDEVEDCSAIGAIIEELQEMIVEGLEAD--------------FEHFEFLQPTIAYL

XP_024024961.1 uncharacterized protein LOC112092618 [Morus notabilis]3.5e-1438.18Show/hide
Query:  MKVIDEQVTFNVLDVMRLPDEVEDCSAIGAI------------------IEELQEMIV------------EGLEADFE---HFEFLQPTIAYLNALEPSI
        M+V D+QVTFNV  VMR  DEVE+CSAI  +                   E+L +  V            EG +A      HFE L+ +   L   +PS+
Subjt:  MKVIDEQVTFNVLDVMRLPDEVEDCSAIGAI------------------IEELQEMIV------------EGLEADFE---HFEFLQPTIAYLNALEPSI

Query:  IEPPELEKKPLPSHLKYTYLGLDDTLPVIISSYLSNEPECHRLLLNLDRK-----GWGVPDVEAV
         EPP LE +PLP HL+Y YLG  DTLPVII+S L+   E    LL + +K     GW + D++ +
Subjt:  IEPPELEKKPLPSHLKYTYLGLDDTLPVIISSYLSNEPECHRLLLNLDRK-----GWGVPDVEAV

XP_030504461.1 uncharacterized protein LOC115719521 [Cannabis sativa]4.8e-1638.79Show/hide
Query:  MKVIDEQVTFNVLDVMRLPDEVEDCSAIGAIIEELQEMI-------------VEGLEADFEH--------------------FEFLQPTIAYLNALEPSI
        M+V D++VTFNV + MR PDE+E+CS +  I   + E               +E LEA  E                     FE L+   +    L+PSI
Subjt:  MKVIDEQVTFNVLDVMRLPDEVEDCSAIGAIIEELQEMI-------------VEGLEADFEH--------------------FEFLQPTIAYLNALEPSI

Query:  IEPPELEKKPLPSHLKYTYLGLDDTLPVIISSYLSNEPECHRLLLNLDRK-----GWGVPDVEAV
         EPP+LE KPLPSHLKY YLG ++TLPVIIS++L  E E   LLL + +K     GW + D++ +
Subjt:  IEPPELEKKPLPSHLKYTYLGLDDTLPVIISSYLSNEPECHRLLLNLDRK-----GWGVPDVEAV

XP_030506603.1 uncharacterized protein LOC115721515 [Cannabis sativa]5.2e-1846.67Show/hide
Query:  MKVIDEQVTFNVLDVMRLPDEVEDCSAIGAIIEELQEMIVEGLE--ADFEH-FEFLQPTIAYLNALEPSIIEPPELEKKPLPSHLKYTYLGLDDTLPVII
        M+V D+QVTFNV + MR PDE+E+CS I    EE +   VE  +    F   FE L+ +       +PSI EPPELE KPLPSHLKY YLG  +TLPVII
Subjt:  MKVIDEQVTFNVLDVMRLPDEVEDCSAIGAIIEELQEMIVEGLE--ADFEH-FEFLQPTIAYLNALEPSIIEPPELEKKPLPSHLKYTYLGLDDTLPVII

Query:  SSYLSNEPECHRLLLNLDRK-----GWGVPDVEAV
        S+ L  + EC  LL+++ +K     GW + D++ +
Subjt:  SSYLSNEPECHRLLLNLDRK-----GWGVPDVEAV

XP_030508913.1 uncharacterized protein LOC115723563 [Cannabis sativa]6.8e-1845.71Show/hide
Query:  MKVIDEQVTFNVLDVMRLPDEVEDCSAIGAIIEELQEMIVEGLE---ADFEHFEFLQPTIAYLNALEPSIIEPPELEKKPLPSHLKYTYLGLDDTLPVII
        M+V D+QVTFNV + MR PDE+E+CS I    EE +   VE  +        FE L+ +       +PSI +PPELE KPLPSHLKY YLG  +TLPVII
Subjt:  MKVIDEQVTFNVLDVMRLPDEVEDCSAIGAIIEELQEMIVEGLE---ADFEHFEFLQPTIAYLNALEPSIIEPPELEKKPLPSHLKYTYLGLDDTLPVII

Query:  SSYLSNEPECHRLLLNLDRK-----GWGVPDVEAVLVPGA
        S+ L  + EC  LL+++ +K     GW + D++   V GA
Subjt:  SSYLSNEPECHRLLLNLDRK-----GWGVPDVEAVLVPGA

TrEMBL top hitse value%identityAlignment
A0A2G9GK35 Reverse transcriptase3.2e-1337.27Show/hide
Query:  MKVIDEQVTFNVLDVMRLPDEVEDCSAIG---------AIIEE--------LQEMIVEGLEADFEHFEFLQPT-------------IAYLNALEPSIIEP
        M+V D+Q+TFNV   M+ P+E ++C A+          +I E+        L +++ E  E D+E  + L  +             IA    L+PSI EP
Subjt:  MKVIDEQVTFNVLDVMRLPDEVEDCSAIG---------AIIEE--------LQEMIVEGLEADFEHFEFLQPT-------------IAYLNALEPSIIEP

Query:  PELEKKPLPSHLKYTYLGLDDTLPVIISSYLSNEPECHRLLLNLDRK----GWGVPDVEAV
        P LE KPLPSHL Y YLG  DTLPVIISS LS + +  +LL  L       GW + D++ +
Subjt:  PELEKKPLPSHLKYTYLGLDDTLPVIISSYLSNEPECHRLLLNLDRK----GWGVPDVEAV

A0A2G9HWC5 DNA-directed DNA polymerase1.4e-1337.5Show/hide
Query:  MKVIDEQVTFNVLDVMRLPDEVEDCSAIG---------AIIEE--------LQEMIVEGLEADFEHFEFLQPTIAYLN-------------ALEPSIIEP
        M+V D+Q+TFNV   M+ P+E ++C A+          +I E+        L ++I EG E D E  + L  +  + +              L+PSI EP
Subjt:  MKVIDEQVTFNVLDVMRLPDEVEDCSAIG---------AIIEE--------LQEMIVEGLEADFEHFEFLQPTIAYLN-------------ALEPSIIEP

Query:  PELEKKPLPSHLKYTYLGLDDTLPVIISSYLSN--EPECHRLLLNLDRK-GWGVPDVEAV
        P LE KPLPSHL Y YLG  DTLPVIISS LS+    +  R+L N +   GW + D++ +
Subjt:  PELEKKPLPSHLKYTYLGLDDTLPVIISSYLSN--EPECHRLLLNLDRK-GWGVPDVEAV

A0A2G9HYD8 Reverse transcriptase1.6e-1235.4Show/hide
Query:  MKVIDEQVTFNVLDVMRLPDEVEDCSAIG---------AIIEE--------LQEMIVEGLEADFEHFEFLQPTIAYLN-------------ALEPSIIEP
        M+V D+Q+TFNV   M+ P+E ++C ++          +I E+        L ++I EG E D E  + L  +  + +              L+PSI +P
Subjt:  MKVIDEQVTFNVLDVMRLPDEVEDCSAIG---------AIIEE--------LQEMIVEGLEADFEHFEFLQPTIAYLN-------------ALEPSIIEP

Query:  PELEKKPLPSHLKYTYLGLDDTLPVIISSYLSNEPECHRLLLNLDRK----GWGVPDVEAV
        P LE KPLP+HL Y YLG  DTLPVIISS LS + +  +LL  L       GW + D++ +
Subjt:  PELEKKPLPSHLKYTYLGLDDTLPVIISSYLSNEPECHRLLLNLDRK----GWGVPDVEAV

A0A2G9IA86 DNA-directed DNA polymerase1.6e-1235.26Show/hide
Query:  MKVIDEQVTFNVLDVMRLPDEVEDCSAIG---------AIIEELQEMIVEGLEADFEHFEFLQPTI-----------------AYLNALEPSIIEPPELE
        M+V D+Q+TFNV   M+ P+E ++C  +          +I + L+  +++ L+ D E    +  T+                 A    L+PSI E P LE
Subjt:  MKVIDEQVTFNVLDVMRLPDEVEDCSAIG---------AIIEELQEMIVEGLEADFEHFEFLQPTI-----------------AYLNALEPSIIEPPELE

Query:  KKPLPSHLKYTYLGLDDTLPVIISSYLSNEPECHRLLLNLDRK---GWGVPDVEAV
         KPLPSHL YTYLG  DTLPVIISS LS+      L +  + K   GW + D++ +
Subjt:  KKPLPSHLKYTYLGLDDTLPVIISSYLSNEPECHRLLLNLDRK---GWGVPDVEAV

A0A6J1CPX1 uncharacterized protein LOC1110135002.0e-1570.27Show/hide
Query:  MKVIDEQVTFNVLDVMRLPDEVEDCSAIGAIIEELQEMIVEGLEAD--------------FEHFEFLQPTIAYL
        MKV DEQ+TFNVLDV RLPDEVEDCSAIGAI+EELQEMIVE LEAD              FEHFE  QPTIA L
Subjt:  MKVIDEQVTFNVLDVMRLPDEVEDCSAIGAIIEELQEMIVEGLEAD--------------FEHFEFLQPTIAYL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGTCATTGATGAACAAGTCACCTTCAACGTCCTTGATGTGATGCGGCTCCCAGATGAAGTCGAGGACTGCTCTGCAATAGGGGCAATCATAGAAGAACTCCAGGA
GATGATTGTGGAAGGCTTAGAAGCAGATTTTGAGCACTTTGAGTTTTTACAACCGACAATAGCTTATTTGAATGCCTTGGAACCTTCCATCATTGAACCTCCAGAACTGG
AGAAGAAACCCCTACCTTCTCATTTAAAATATACTTACTTGGGTTTAGACGATACTTTGCCAGTTATCATTTCTTCGTATTTGTCTAATGAACCTGAATGTCACAGACTA
CTTCTAAATCTCGATAGAAAAGGTTGGGGAGTGCCAGATGTAGAAGCAGTTCTAGTCCCAGGTGCTGAGCTGGCGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAGGTCATTGATGAACAAGTCACCTTCAACGTCCTTGATGTGATGCGGCTCCCAGATGAAGTCGAGGACTGCTCTGCAATAGGGGCAATCATAGAAGAACTCCAGGA
GATGATTGTGGAAGGCTTAGAAGCAGATTTTGAGCACTTTGAGTTTTTACAACCGACAATAGCTTATTTGAATGCCTTGGAACCTTCCATCATTGAACCTCCAGAACTGG
AGAAGAAACCCCTACCTTCTCATTTAAAATATACTTACTTGGGTTTAGACGATACTTTGCCAGTTATCATTTCTTCGTATTTGTCTAATGAACCTGAATGTCACAGACTA
CTTCTAAATCTCGATAGAAAAGGTTGGGGAGTGCCAGATGTAGAAGCAGTTCTAGTCCCAGGTGCTGAGCTGGCGTAG
Protein sequenceShow/hide protein sequence
MKVIDEQVTFNVLDVMRLPDEVEDCSAIGAIIEELQEMIVEGLEADFEHFEFLQPTIAYLNALEPSIIEPPELEKKPLPSHLKYTYLGLDDTLPVIISSYLSNEPECHRL
LLNLDRKGWGVPDVEAVLVPGAELA