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Moc04g20460 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc04g20460
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionTy1-copia retrotransposon protein
Genome locationchr4:14834725..14839074
RNA-Seq ExpressionMoc04g20460
SyntenyMoc04g20460
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK01594.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]7.3e-2053.04Show/hide
Query:  AIRSGKVLPDLSKLEPLDGSNYRRWDRAQKNKGLQPKNI--------GGRIEKSKLICYVCGKAGHKSYQCTQRKDRKDQRATPQANLTETDDIIAAVVV
        A+R G+   + +K    DG   R  DR ++ KG + KN         GG+I+K KL+CYVCGK GHKSYQC QRK R  Q+ TPQANL E D+ I A +V
Subjt:  AIRSGKVLPDLSKLEPLDGSNYRRWDRAQKNKGLQPKNI--------GGRIEKSKLICYVCGKAGHKSYQCTQRKDRKDQRATPQANLTETDDIIAAVVV

Query:  EANLEENKSDWILDT
        EANL ENK+DWILDT
Subjt:  EANLEENKSDWILDT

TYK11299.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]8.6e-2146.28Show/hide
Query:  VFDQQVESKILLMAAIRSGKVLPDLSKLEPLDGSNYRRWDRAQKNKGLQPKNIGGRIEKSKLICYVCGKAGHKSYQCTQRKDRKDQRATPQANLTETDDI
        V +Q  E + L+   +  G  + ++ +   +D +   +  + + ++  Q K  GG+I+K KL+CYVCGK GHKSYQC QRK R  Q+ TPQANL E D  
Subjt:  VFDQQVESKILLMAAIRSGKVLPDLSKLEPLDGSNYRRWDRAQKNKGLQPKNIGGRIEKSKLICYVCGKAGHKSYQCTQRKDRKDQRATPQANLTETDDI

Query:  IAAVVVEANLEENKSDWILDT
        I A +VEANL ENK+DWILDT
Subjt:  IAAVVVEANLEENKSDWILDT

XP_008445782.1 PREDICTED: uncharacterized protein LOC103488707 [Cucumis melo]8.6e-2146.28Show/hide
Query:  VFDQQVESKILLMAAIRSGKVLPDLSKLEPLDGSNYRRWDRAQKNKGLQPKNIGGRIEKSKLICYVCGKAGHKSYQCTQRKDRKDQRATPQANLTETDDI
        V +Q  E + L+   +  G  + ++ +   +D +   +  + + ++  Q K  GG+I+K KL+CYVCGK GHKSYQC QRK R  Q+ TPQANL E D  
Subjt:  VFDQQVESKILLMAAIRSGKVLPDLSKLEPLDGSNYRRWDRAQKNKGLQPKNIGGRIEKSKLICYVCGKAGHKSYQCTQRKDRKDQRATPQANLTETDDI

Query:  IAAVVVEANLEENKSDWILDT
        I A +VEANL ENK+DWILDT
Subjt:  IAAVVVEANLEENKSDWILDT

XP_022153695.1 uncharacterized protein LOC111021147 [Momordica charantia]4.1e-3186.59Show/hide
Query:  DRAQKNKGLQPKNIGGRIEKSKLICYVCGKAGHKSYQCTQRKDRKDQRATPQANLTETDDIIAAVVVEANLEENKSDWILDT
        DRAQKNKGLQPKN GGRIEKSKL+CYVC K  HKSYQCTQ+KDR DQRATPQANLTETDDII  VVVE NL ENKSDWILDT
Subjt:  DRAQKNKGLQPKNIGGRIEKSKLICYVCGKAGHKSYQCTQRKDRKDQRATPQANLTETDDIIAAVVVEANLEENKSDWILDT

XP_022156023.1 uncharacterized protein LOC111022991 [Momordica charantia]5.0e-2980.49Show/hide
Query:  DRAQKNKGLQPKNIGGRIEKSKLICYVCGKAGHKSYQCTQRKDRKDQRATPQANLTETDDIIAAVVVEANLEENKSDWILDT
        DRAQKNKGL+PKNIGGR+EK KL+CYVC K GHKSYQCTQ+KDRKDQR  PQAN+ ET +IIA VVVEANL ENKS+WILDT
Subjt:  DRAQKNKGLQPKNIGGRIEKSKLICYVCGKAGHKSYQCTQRKDRKDQRATPQANLTETDDIIAAVVVEANLEENKSDWILDT

TrEMBL top hitse value%identityAlignment
A0A1S3BE75 uncharacterized protein LOC1034887074.2e-2146.28Show/hide
Query:  VFDQQVESKILLMAAIRSGKVLPDLSKLEPLDGSNYRRWDRAQKNKGLQPKNIGGRIEKSKLICYVCGKAGHKSYQCTQRKDRKDQRATPQANLTETDDI
        V +Q  E + L+   +  G  + ++ +   +D +   +  + + ++  Q K  GG+I+K KL+CYVCGK GHKSYQC QRK R  Q+ TPQANL E D  
Subjt:  VFDQQVESKILLMAAIRSGKVLPDLSKLEPLDGSNYRRWDRAQKNKGLQPKNIGGRIEKSKLICYVCGKAGHKSYQCTQRKDRKDQRATPQANLTETDDI

Query:  IAAVVVEANLEENKSDWILDT
        I A +VEANL ENK+DWILDT
Subjt:  IAAVVVEANLEENKSDWILDT

A0A5A7U1P8 Ty1-copia retrotransposon protein3.5e-2057.29Show/hide
Query:  SNYRRWDRAQKNKGLQPKN--------IGGRIEKSKLICYVCGKAGHKSYQCTQRKDRKDQRATPQANLTETDDIIAAVVVEANLEENKSDWILDT
        S++   DR ++ KG + KN         GG+I+K KL+CYVCGK GHKSYQC QRK R +Q+ TPQANL E D  I A +VEANL ENK+DWILDT
Subjt:  SNYRRWDRAQKNKGLQPKN--------IGGRIEKSKLICYVCGKAGHKSYQCTQRKDRKDQRATPQANLTETDDIIAAVVVEANLEENKSDWILDT

A0A5D3CM58 Ty1-copia retrotransposon protein4.2e-2146.28Show/hide
Query:  VFDQQVESKILLMAAIRSGKVLPDLSKLEPLDGSNYRRWDRAQKNKGLQPKNIGGRIEKSKLICYVCGKAGHKSYQCTQRKDRKDQRATPQANLTETDDI
        V +Q  E + L+   +  G  + ++ +   +D +   +  + + ++  Q K  GG+I+K KL+CYVCGK GHKSYQC QRK R  Q+ TPQANL E D  
Subjt:  VFDQQVESKILLMAAIRSGKVLPDLSKLEPLDGSNYRRWDRAQKNKGLQPKNIGGRIEKSKLICYVCGKAGHKSYQCTQRKDRKDQRATPQANLTETDDI

Query:  IAAVVVEANLEENKSDWILDT
        I A +VEANL ENK+DWILDT
Subjt:  IAAVVVEANLEENKSDWILDT

A0A6J1DHJ4 uncharacterized protein LOC1110211472.0e-3186.59Show/hide
Query:  DRAQKNKGLQPKNIGGRIEKSKLICYVCGKAGHKSYQCTQRKDRKDQRATPQANLTETDDIIAAVVVEANLEENKSDWILDT
        DRAQKNKGLQPKN GGRIEKSKL+CYVC K  HKSYQCTQ+KDR DQRATPQANLTETDDII  VVVE NL ENKSDWILDT
Subjt:  DRAQKNKGLQPKNIGGRIEKSKLICYVCGKAGHKSYQCTQRKDRKDQRATPQANLTETDDIIAAVVVEANLEENKSDWILDT

A0A6J1DPG7 uncharacterized protein LOC1110229912.4e-2980.49Show/hide
Query:  DRAQKNKGLQPKNIGGRIEKSKLICYVCGKAGHKSYQCTQRKDRKDQRATPQANLTETDDIIAAVVVEANLEENKSDWILDT
        DRAQKNKGL+PKNIGGR+EK KL+CYVC K GHKSYQCTQ+KDRKDQR  PQAN+ ET +IIA VVVEANL ENKS+WILDT
Subjt:  DRAQKNKGLQPKNIGGRIEKSKLICYVCGKAGHKSYQCTQRKDRKDQRATPQANLTETDDIIAAVVVEANLEENKSDWILDT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCAAAGAGGTTTGGGCTTCCAAAACTGAGTTCGAATGTCCTTAGGCTTGCTGTTCCGATGCCAAAAGCGATGGGCAATGCTGGTTTGAGTCTAAATAGGGGTGGGTA
CCGCAAATCGAACTCCGGACAGGGCCGCCGTCGGAACGCCGCAGAAACGACACTGCCACTGCAGAAACACCGGAACCGCCCTGGATTTGGGTTCCAAACCCGTGTGCGAC
GCCGGAAATGGGCTGAAAGCGCGCCGCTGCTGCCATCGACGACTGCCGAAGGAGTTCCGAAGTCGCGCCGTCGTTCGGGATTAAGAGCCGCCGCTGCTGTTCGATCCGAA
GAAACGCCGCCGCTCGTGGGTTGCTATTCCACCGTCGGGTCGTCGTCGGCCGCCGCTGCACCTCGCTGGAAAACGAACTTGTGGCTGCCAAAAATTAACAACAAGAAGGA
AGGGGGTGGGTGTGACGGTTGCAAACTTGAAACATTCAAGAAAGGTTTGATTAACCTCTCTTGTGGAGTGTTCAACGTCGAGTATGGAACCAGTTCTCCTTGTCTCGTGG
TCTTTGATCAACAAGTTGAAAGCAAAATCCTACTAATGGCTGCTATCCGATCTGGGAAGGTCCTACCGGACTTGTCAAAATTGGAACCACTCGACGGATCCAACTATCGC
CGATGGGATAGAGCTCAAAAGAACAAAGGTCTCCAACCTAAAAATATTGGTGGAAGAATCGAGAAATCCAAACTGATCTGCTATGTCTGTGGAAAAGCCGGGCACAAATC
CTATCAGTGCACTCAGAGGAAAGATAGGAAAGATCAAAGGGCTACTCCACAAGCCAACCTTACAGAGACGGATGACATCATTGCCGCTGTGGTTGTGGAAGCGAATCTAG
AAGAGAACAAATCCGACTGGATTCTTGACACATGA
mRNA sequenceShow/hide mRNA sequence
ATGCCAAAGAGGTTTGGGCTTCCAAAACTGAGTTCGAATGTCCTTAGGCTTGCTGTTCCGATGCCAAAAGCGATGGGCAATGCTGGTTTGAGTCTAAATAGGGGTGGGTA
CCGCAAATCGAACTCCGGACAGGGCCGCCGTCGGAACGCCGCAGAAACGACACTGCCACTGCAGAAACACCGGAACCGCCCTGGATTTGGGTTCCAAACCCGTGTGCGAC
GCCGGAAATGGGCTGAAAGCGCGCCGCTGCTGCCATCGACGACTGCCGAAGGAGTTCCGAAGTCGCGCCGTCGTTCGGGATTAAGAGCCGCCGCTGCTGTTCGATCCGAA
GAAACGCCGCCGCTCGTGGGTTGCTATTCCACCGTCGGGTCGTCGTCGGCCGCCGCTGCACCTCGCTGGAAAACGAACTTGTGGCTGCCAAAAATTAACAACAAGAAGGA
AGGGGGTGGGTGTGACGGTTGCAAACTTGAAACATTCAAGAAAGGTTTGATTAACCTCTCTTGTGGAGTGTTCAACGTCGAGTATGGAACCAGTTCTCCTTGTCTCGTGG
TCTTTGATCAACAAGTTGAAAGCAAAATCCTACTAATGGCTGCTATCCGATCTGGGAAGGTCCTACCGGACTTGTCAAAATTGGAACCACTCGACGGATCCAACTATCGC
CGATGGGATAGAGCTCAAAAGAACAAAGGTCTCCAACCTAAAAATATTGGTGGAAGAATCGAGAAATCCAAACTGATCTGCTATGTCTGTGGAAAAGCCGGGCACAAATC
CTATCAGTGCACTCAGAGGAAAGATAGGAAAGATCAAAGGGCTACTCCACAAGCCAACCTTACAGAGACGGATGACATCATTGCCGCTGTGGTTGTGGAAGCGAATCTAG
AAGAGAACAAATCCGACTGGATTCTTGACACATGA
Protein sequenceShow/hide protein sequence
MPKRFGLPKLSSNVLRLAVPMPKAMGNAGLSLNRGGYRKSNSGQGRRRNAAETTLPLQKHRNRPGFGFQTRVRRRKWAESAPLLPSTTAEGVPKSRRRSGLRAAAAVRSE
ETPPLVGCYSTVGSSSAAAAPRWKTNLWLPKINNKKEGGGCDGCKLETFKKGLINLSCGVFNVEYGTSSPCLVVFDQQVESKILLMAAIRSGKVLPDLSKLEPLDGSNYR
RWDRAQKNKGLQPKNIGGRIEKSKLICYVCGKAGHKSYQCTQRKDRKDQRATPQANLTETDDIIAAVVVEANLEENKSDWILDT