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Moc04g20860 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc04g20860
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionGag/pol protein
Genome locationchr4:15181524..15184274
RNA-Seq ExpressionMoc04g20860
SyntenyMoc04g20860
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]1.0e-2948.95Show/hide
Query:  HFNVEESNGTVIDEQSQVNFILESLLKSFQPFCSNAVMNK---------------KGRQMVSPQKGSTEVQPLEPSLHPLLQKVRLSK---------NKK
        HFNV E NG VIDE SQV+FILESL +SF  F SNAVMNK               +    +  QKG   V       H        S           KK
Subjt:  HFNVEESNGTVIDEQSQVNFILESLLKSFQPFCSNAVMNK---------------KGRQMVSPQKGSTEVQPLEPSLHPLLQKVRLSK---------NKK

Query:  PAGKGSKPNFAAAAAKKGKAKARNI---YNIDRHLKHNCLKYLAKKKRANEGKYDLLVLETCLVENDDSVWILDSRATSYVCSSFQEISS
          G+G+K N AAA   K    A+ I    N + H K NC KYLA+KK+A +GKYDLLVLETCLVENDDS WI+DS AT++VCSSFQ ISS
Subjt:  PAGKGSKPNFAAAAAKKGKAKARNI---YNIDRHLKHNCLKYLAKKKRANEGKYDLLVLETCLVENDDSVWILDSRATSYVCSSFQEISS
KAA0046415.1 gag/pol protein [Cucumis melo var. makuwa]3.5e-3048.95Show/hide
Query:  HFNVEESNGTVIDEQSQVNFILESLLKSFQPFCSNAVMNK---------------KGRQMVSPQKGSTEVQPLEPSLHPLLQKVRLSK---------NKK
        HFN+ E NG VIDE SQV+FILESL +SF  F SNAVMNK               +    +  QKG   V       H  L     S           KK
Subjt:  HFNVEESNGTVIDEQSQVNFILESLLKSFQPFCSNAVMNK---------------KGRQMVSPQKGSTEVQPLEPSLHPLLQKVRLSK---------NKK

Query:  PAGKGSKPNFAAAAAKKGKAKARNI---YNIDRHLKHNCLKYLAKKKRANEGKYDLLVLETCLVENDDSVWILDSRATSYVCSSFQEISS
          G+G+K N AAA   K    A+ I    N + H K NC KYLA+KK+A +GKYDLLVLETCLVENDDS WI+DS AT++VCSSFQ ISS
Subjt:  PAGKGSKPNFAAAAAKKGKAKARNI---YNIDRHLKHNCLKYLAKKKRANEGKYDLLVLETCLVENDDSVWILDSRATSYVCSSFQEISS
KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]1.0e-2948.95Show/hide
Query:  HFNVEESNGTVIDEQSQVNFILESLLKSFQPFCSNAVMNK---------------KGRQMVSPQKGSTEVQPLEPSLHPLLQKVRLSK---------NKK
        HFNV E NG VIDE SQV+FILESL +SF  F SNAVMNK               +    +  QKG   V       H        S           KK
Subjt:  HFNVEESNGTVIDEQSQVNFILESLLKSFQPFCSNAVMNK---------------KGRQMVSPQKGSTEVQPLEPSLHPLLQKVRLSK---------NKK

Query:  PAGKGSKPNFAAAAAKKGKAKARNI---YNIDRHLKHNCLKYLAKKKRANEGKYDLLVLETCLVENDDSVWILDSRATSYVCSSFQEISS
          G+G+K N AAA   K    A+ I    N + H K NC KYLA+KK+A +GKYDLLVLETCLVENDDS WI+DS AT++VCSSFQ ISS
Subjt:  PAGKGSKPNFAAAAAKKGKAKARNI---YNIDRHLKHNCLKYLAKKKRANEGKYDLLVLETCLVENDDSVWILDSRATSYVCSSFQEISS
KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa]1.0e-2948.95Show/hide
Query:  HFNVEESNGTVIDEQSQVNFILESLLKSFQPFCSNAVMNK---------------KGRQMVSPQKGSTEVQPLEPSLHPLLQKVRLSK---------NKK
        HFNV E NG VIDE SQV+FILESL +SF  F SNAVMNK               +    +  QKG   V       H        S           KK
Subjt:  HFNVEESNGTVIDEQSQVNFILESLLKSFQPFCSNAVMNK---------------KGRQMVSPQKGSTEVQPLEPSLHPLLQKVRLSK---------NKK

Query:  PAGKGSKPNFAAAAAKKGKAKARNI---YNIDRHLKHNCLKYLAKKKRANEGKYDLLVLETCLVENDDSVWILDSRATSYVCSSFQEISS
          G+G+K N AAA   K    A+ I    N + H K NC KYLA+KK+A +GKYDLLVLETCLVENDDS WI+DS AT++VCSSFQ ISS
Subjt:  PAGKGSKPNFAAAAAKKGKAKARNI---YNIDRHLKHNCLKYLAKKKRANEGKYDLLVLETCLVENDDSVWILDSRATSYVCSSFQEISS
TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]1.0e-2948.95Show/hide
Query:  HFNVEESNGTVIDEQSQVNFILESLLKSFQPFCSNAVMNK---------------KGRQMVSPQKGSTEVQPLEPSLHPLLQKVRLSK---------NKK
        HFNV E NG VIDE SQV+FILESL +SF  F SNAVMNK               +    +  QKG   V       H        S           KK
Subjt:  HFNVEESNGTVIDEQSQVNFILESLLKSFQPFCSNAVMNK---------------KGRQMVSPQKGSTEVQPLEPSLHPLLQKVRLSK---------NKK

Query:  PAGKGSKPNFAAAAAKKGKAKARNI---YNIDRHLKHNCLKYLAKKKRANEGKYDLLVLETCLVENDDSVWILDSRATSYVCSSFQEISS
          G+G+K N AAA   K    A+ I    N + H K NC KYLA+KK+A +GKYDLLVLETCLVENDDS WI+DS AT++VCSSFQ ISS
Subjt:  PAGKGSKPNFAAAAAKKGKAKARNI---YNIDRHLKHNCLKYLAKKKRANEGKYDLLVLETCLVENDDSVWILDSRATSYVCSSFQEISS
TrEMBL top hitse value%identityAlignment
A0A5A7SMH8 Gag/pol protein5.0e-3048.95Show/hide
Query:  HFNVEESNGTVIDEQSQVNFILESLLKSFQPFCSNAVMNK---------------KGRQMVSPQKGSTEVQPLEPSLHPLLQKVRLSK---------NKK
        HFNV E NG VIDE SQV+FILESL +SF  F SNAVMNK               +    +  QKG   V       H        S           KK
Subjt:  HFNVEESNGTVIDEQSQVNFILESLLKSFQPFCSNAVMNK---------------KGRQMVSPQKGSTEVQPLEPSLHPLLQKVRLSK---------NKK

Query:  PAGKGSKPNFAAAAAKKGKAKARNI---YNIDRHLKHNCLKYLAKKKRANEGKYDLLVLETCLVENDDSVWILDSRATSYVCSSFQEISS
          G+G+K N AAA   K    A+ I    N + H K NC KYLA+KK+A +GKYDLLVLETCLVENDDS WI+DS AT++VCSSFQ ISS
Subjt:  PAGKGSKPNFAAAAAKKGKAKARNI---YNIDRHLKHNCLKYLAKKKRANEGKYDLLVLETCLVENDDSVWILDSRATSYVCSSFQEISS
A0A5A7TU93 Gag/pol protein5.0e-3048.95Show/hide
Query:  HFNVEESNGTVIDEQSQVNFILESLLKSFQPFCSNAVMNK---------------KGRQMVSPQKGSTEVQPLEPSLHPLLQKVRLSK---------NKK
        HFNV E NG VIDE SQV+FILESL +SF  F SNAVMNK               +    +  QKG   V       H        S           KK
Subjt:  HFNVEESNGTVIDEQSQVNFILESLLKSFQPFCSNAVMNK---------------KGRQMVSPQKGSTEVQPLEPSLHPLLQKVRLSK---------NKK

Query:  PAGKGSKPNFAAAAAKKGKAKARNI---YNIDRHLKHNCLKYLAKKKRANEGKYDLLVLETCLVENDDSVWILDSRATSYVCSSFQEISS
          G+G+K N AAA   K    A+ I    N + H K NC KYLA+KK+A +GKYDLLVLETCLVENDDS WI+DS AT++VCSSFQ ISS
Subjt:  PAGKGSKPNFAAAAAKKGKAKARNI---YNIDRHLKHNCLKYLAKKKRANEGKYDLLVLETCLVENDDSVWILDSRATSYVCSSFQEISS
A0A5A7TYF5 Gag/pol protein1.7e-3048.95Show/hide
Query:  HFNVEESNGTVIDEQSQVNFILESLLKSFQPFCSNAVMNK---------------KGRQMVSPQKGSTEVQPLEPSLHPLLQKVRLSK---------NKK
        HFN+ E NG VIDE SQV+FILESL +SF  F SNAVMNK               +    +  QKG   V       H  L     S           KK
Subjt:  HFNVEESNGTVIDEQSQVNFILESLLKSFQPFCSNAVMNK---------------KGRQMVSPQKGSTEVQPLEPSLHPLLQKVRLSK---------NKK

Query:  PAGKGSKPNFAAAAAKKGKAKARNI---YNIDRHLKHNCLKYLAKKKRANEGKYDLLVLETCLVENDDSVWILDSRATSYVCSSFQEISS
          G+G+K N AAA   K    A+ I    N + H K NC KYLA+KK+A +GKYDLLVLETCLVENDDS WI+DS AT++VCSSFQ ISS
Subjt:  PAGKGSKPNFAAAAAKKGKAKARNI---YNIDRHLKHNCLKYLAKKKRANEGKYDLLVLETCLVENDDSVWILDSRATSYVCSSFQEISS
A0A5A7V4M1 Gag/pol protein5.0e-3048.95Show/hide
Query:  HFNVEESNGTVIDEQSQVNFILESLLKSFQPFCSNAVMNK---------------KGRQMVSPQKGSTEVQPLEPSLHPLLQKVRLSK---------NKK
        HFNV E NG VIDE SQV+FILESL +SF  F SNAVMNK               +    +  QKG   V       H        S           KK
Subjt:  HFNVEESNGTVIDEQSQVNFILESLLKSFQPFCSNAVMNK---------------KGRQMVSPQKGSTEVQPLEPSLHPLLQKVRLSK---------NKK

Query:  PAGKGSKPNFAAAAAKKGKAKARNI---YNIDRHLKHNCLKYLAKKKRANEGKYDLLVLETCLVENDDSVWILDSRATSYVCSSFQEISS
          G+G+K N AAA   K    A+ I    N + H K NC KYLA+KK+A +GKYDLLVLETCLVENDDS WI+DS AT++VCSSFQ ISS
Subjt:  PAGKGSKPNFAAAAAKKGKAKARNI---YNIDRHLKHNCLKYLAKKKRANEGKYDLLVLETCLVENDDSVWILDSRATSYVCSSFQEISS
A0A5D3CPJ6 Gag/pol protein5.0e-3048.95Show/hide
Query:  HFNVEESNGTVIDEQSQVNFILESLLKSFQPFCSNAVMNK---------------KGRQMVSPQKGSTEVQPLEPSLHPLLQKVRLSK---------NKK
        HFNV E NG VIDE SQV+FILESL +SF  F SNAVMNK               +    +  QKG   V       H        S           KK
Subjt:  HFNVEESNGTVIDEQSQVNFILESLLKSFQPFCSNAVMNK---------------KGRQMVSPQKGSTEVQPLEPSLHPLLQKVRLSK---------NKK

Query:  PAGKGSKPNFAAAAAKKGKAKARNI---YNIDRHLKHNCLKYLAKKKRANEGKYDLLVLETCLVENDDSVWILDSRATSYVCSSFQEISS
          G+G+K N AAA   K    A+ I    N + H K NC KYLA+KK+A +GKYDLLVLETCLVENDDS WI+DS AT++VCSSFQ ISS
Subjt:  PAGKGSKPNFAAAAAKKGKAKARNI---YNIDRHLKHNCLKYLAKKKRANEGKYDLLVLETCLVENDDSVWILDSRATSYVCSSFQEISS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGCTGCAAAGGACAGCAGACAACGCCACAACATTGCACTGTAGGCCGCGACGCTATGCTGGTGCTGTAGCTGCTGGTTCGTCTTGCAAGAGGATTGTCCTCAAGCT
CCTGCGCCTAATGCCACTGTGGCGGTGCACAACGTCTATGACCGATGGATCAAGGCCACAAGGCCAAGGAGGGCTCCTTAGTGCGAGAACACGTACTCAACCTGATAGCC
ACTTCAACGTGGAAGAGTCGAACGGGACCGTCATAGACGAGCAGAGTCAGGTCAACTTCATTCTGGAATCTCTTCTGAAGAGTTTCCAGCCATTCTGCAGCAATGCGGTT
ATGAATAAGAAGGGGAGGCAAATGGTGTCACCTCAAAAAGGTTCCACCGAGGTTCAACCTCTGGAACCAAGTCTGCACCCTCTTCTTCAGAAAGTAAGACTTTCAAAAAA
TAAGAAGCCTGCTGGTAAGGGGTCTAAACCTAACTTCGCTGCTGCCGCTGCCAAGAAAGGCAAGGCCAAAGCCCGAAATATCTACAACATAGACAGGCATTTGAAGCACA
ATTGCCTGAAATACCTGGCCAAGAAAAAGAGAGCCAACGAAGGTAAATATGATTTACTTGTTTTGGAAACATGTTTAGTGGAGAATGATGACTCCGTCTGGATATTAGAT
TCAAGAGCCACTAGTTACGTTTGTTCTTCATTTCAGGAAATTAGTTCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTGCTGCAAAGGACAGCAGACAACGCCACAACATTGCACTGTAGGCCGCGACGCTATGCTGGTGCTGTAGCTGCTGGTTCGTCTTGCAAGAGGATTGTCCTCAAGCT
CCTGCGCCTAATGCCACTGTGGCGGTGCACAACGTCTATGACCGATGGATCAAGGCCACAAGGCCAAGGAGGGCTCCTTAGTGCGAGAACACGTACTCAACCTGATAGCC
ACTTCAACGTGGAAGAGTCGAACGGGACCGTCATAGACGAGCAGAGTCAGGTCAACTTCATTCTGGAATCTCTTCTGAAGAGTTTCCAGCCATTCTGCAGCAATGCGGTT
ATGAATAAGAAGGGGAGGCAAATGGTGTCACCTCAAAAAGGTTCCACCGAGGTTCAACCTCTGGAACCAAGTCTGCACCCTCTTCTTCAGAAAGTAAGACTTTCAAAAAA
TAAGAAGCCTGCTGGTAAGGGGTCTAAACCTAACTTCGCTGCTGCCGCTGCCAAGAAAGGCAAGGCCAAAGCCCGAAATATCTACAACATAGACAGGCATTTGAAGCACA
ATTGCCTGAAATACCTGGCCAAGAAAAAGAGAGCCAACGAAGGTAAATATGATTTACTTGTTTTGGAAACATGTTTAGTGGAGAATGATGACTCCGTCTGGATATTAGAT
TCAAGAGCCACTAGTTACGTTTGTTCTTCATTTCAGGAAATTAGTTCCTAG
Protein sequenceShow/hide protein sequence
MVLQRTADNATTLHCRPRRYAGAVAAGSSCKRIVLKLLRLMPLWRCTTSMTDGSRPQGQGGLLSARTRTQPDSHFNVEESNGTVIDEQSQVNFILESLLKSFQPFCSNAV
MNKKGRQMVSPQKGSTEVQPLEPSLHPLLQKVRLSKNKKPAGKGSKPNFAAAAAKKGKAKARNIYNIDRHLKHNCLKYLAKKKRANEGKYDLLVLETCLVENDDSVWILD
SRATSYVCSSFQEISS