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Moc04g20950 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc04g20950
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein
Genome locationchr4:15298959..15299974
RNA-Seq ExpressionMoc04g20950
SyntenyMoc04g20950
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0067953.1 RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein [Cucumis melo var. makuwa]6.7e-0530.81Show/hide
Query:  KEYAQRWGEATEQLPVPLINKEPHPETNRSSIKRKNKVEAVVSKRKG-----KYQQGFVAY--SPSTVSINSLTLQNDSQTLP---DNHSSGRQLKRKS-
        KEYAQRW +   ++  PL +KE    +   +  R    E ++ K K      KY+Q F +Y  + S +  NS  L +     P   +++S    +KR+  
Subjt:  KEYAQRWGEATEQLPVPLINKEPHPETNRSSIKRKNKVEAVVSKRKG-----KYQQGFVAY--SPSTVSINSLTLQNDSQTLP---DNHSSGRQLKRKS-

Query:  --------FHLIPISYIELLSQLFQ---------------------------------GHSTENYTSLKHKVQVLMKAGWLKFSK
                F  IP++YIELL QL Q                                 GHSTEN  +LK KVQ L+ AGWL F K
Subjt:  --------FHLIPISYIELLSQLFQ---------------------------------GHSTENYTSLKHKVQVLMKAGWLKFSK

XP_022143515.1 uncharacterized protein LOC111013388 [Momordica charantia]9.9e-2572.55Show/hide
Query:  MEEFNAELKNIGDEIHERVMEELNIELKKIRDKIQEQVMKVQNVELKKMRQDIDNIQEQVMEILNVLKNIVTARDISQPNNLVESHNNSPPREDSPLCQS
        MEEFNAELK I DEIHERV+EELN ELK+IRD+IQE V +V NVELKKMRQDID IQ QV  ILNVLK IVT  DISQPNNLVE HNNS  R    L + 
Subjt:  MEEFNAELKNIGDEIHERVMEELNIELKKIRDKIQEQVMKVQNVELKKMRQDIDNIQEQVMEILNVLKNIVTARDISQPNNLVESHNNSPPREDSPLCQS

Query:  KK
        +K
Subjt:  KK

XP_022153553.1 uncharacterized protein LOC111021029 [Momordica charantia]4.9e-10980.51Show/hide
Query:  MEEFNAELKNIGDEIHERVMEELNIELKKIRDKIQEQVMKVQNVELKKMRQDIDNIQEQVMEILNVLKNIVTARDISQPNNLVESHNNSPPREDSPLCQS
        MEEFNAELKNI DEIHERV+EELNIELKKIRD+IQEQVM+VQNVELKKMRQDIDNIQ+QVM+ILNVLKNIVT    SQPNNLVE +NNS PR D PLCQS
Subjt:  MEEFNAELKNIGDEIHERVMEELNIELKKIRDKIQEQVMKVQNVELKKMRQDIDNIQEQVMEILNVLKNIVTARDISQPNNLVESHNNSPPREDSPLCQS

Query:  KKGFPQHSSSHDAQLSKKGQEVPTNCQVELTFKDGQTSKVNYSDNLKGKGKENVTNGNAEGTAGKEYAQRWGEATEQLPVPLINKEPHPETNRSSIKRKN
        K+GFPQHSSSHDAQLSKKGQ+VPTNCQVE TFKD QT KVNYSDNLKG+ KENVT             QRWG+A EQLPVPLINKEPHP+ N+SSIKRKN
Subjt:  KKGFPQHSSSHDAQLSKKGQEVPTNCQVELTFKDGQTSKVNYSDNLKGKGKENVTNGNAEGTAGKEYAQRWGEATEQLPVPLINKEPHPETNRSSIKRKN

Query:  KVEAVVSKRKGKYQQGFVAYSPSTVSINSLTLQNDSQTLPDNHSSGRQLKRKSFHLIPISYIELLSQLFQGH
        KV AVVSKRK KYQQGFVAYSPSTV INS+TLQ+D QTLP+NHSS RQLKR+SFH IP SY ELLSQLFQG+
Subjt:  KVEAVVSKRKGKYQQGFVAYSPSTVSINSLTLQNDSQTLPDNHSSGRQLKRKSFHLIPISYIELLSQLFQGH

TrEMBL top hitse value%identityAlignment
A0A5A7VIM6 RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein3.2e-0530.81Show/hide
Query:  KEYAQRWGEATEQLPVPLINKEPHPETNRSSIKRKNKVEAVVSKRKG-----KYQQGFVAY--SPSTVSINSLTLQNDSQTLP---DNHSSGRQLKRKS-
        KEYAQRW +   ++  PL +KE    +   +  R    E ++ K K      KY+Q F +Y  + S +  NS  L +     P   +++S    +KR+  
Subjt:  KEYAQRWGEATEQLPVPLINKEPHPETNRSSIKRKNKVEAVVSKRKG-----KYQQGFVAY--SPSTVSINSLTLQNDSQTLP---DNHSSGRQLKRKS-

Query:  --------FHLIPISYIELLSQLFQ---------------------------------GHSTENYTSLKHKVQVLMKAGWLKFSK
                F  IP++YIELL QL Q                                 GHSTEN  +LK KVQ L+ AGWL F K
Subjt:  --------FHLIPISYIELLSQLFQ---------------------------------GHSTENYTSLKHKVQVLMKAGWLKFSK

A0A6J1CP05 uncharacterized protein LOC1110133884.8e-2572.55Show/hide
Query:  MEEFNAELKNIGDEIHERVMEELNIELKKIRDKIQEQVMKVQNVELKKMRQDIDNIQEQVMEILNVLKNIVTARDISQPNNLVESHNNSPPREDSPLCQS
        MEEFNAELK I DEIHERV+EELN ELK+IRD+IQE V +V NVELKKMRQDID IQ QV  ILNVLK IVT  DISQPNNLVE HNNS  R    L + 
Subjt:  MEEFNAELKNIGDEIHERVMEELNIELKKIRDKIQEQVMKVQNVELKKMRQDIDNIQEQVMEILNVLKNIVTARDISQPNNLVESHNNSPPREDSPLCQS

Query:  KK
        +K
Subjt:  KK

A0A6J1DHS7 uncharacterized protein LOC1110210292.4e-10980.51Show/hide
Query:  MEEFNAELKNIGDEIHERVMEELNIELKKIRDKIQEQVMKVQNVELKKMRQDIDNIQEQVMEILNVLKNIVTARDISQPNNLVESHNNSPPREDSPLCQS
        MEEFNAELKNI DEIHERV+EELNIELKKIRD+IQEQVM+VQNVELKKMRQDIDNIQ+QVM+ILNVLKNIVT    SQPNNLVE +NNS PR D PLCQS
Subjt:  MEEFNAELKNIGDEIHERVMEELNIELKKIRDKIQEQVMKVQNVELKKMRQDIDNIQEQVMEILNVLKNIVTARDISQPNNLVESHNNSPPREDSPLCQS

Query:  KKGFPQHSSSHDAQLSKKGQEVPTNCQVELTFKDGQTSKVNYSDNLKGKGKENVTNGNAEGTAGKEYAQRWGEATEQLPVPLINKEPHPETNRSSIKRKN
        K+GFPQHSSSHDAQLSKKGQ+VPTNCQVE TFKD QT KVNYSDNLKG+ KENVT             QRWG+A EQLPVPLINKEPHP+ N+SSIKRKN
Subjt:  KKGFPQHSSSHDAQLSKKGQEVPTNCQVELTFKDGQTSKVNYSDNLKGKGKENVTNGNAEGTAGKEYAQRWGEATEQLPVPLINKEPHPETNRSSIKRKN

Query:  KVEAVVSKRKGKYQQGFVAYSPSTVSINSLTLQNDSQTLPDNHSSGRQLKRKSFHLIPISYIELLSQLFQGH
        KV AVVSKRK KYQQGFVAYSPSTV INS+TLQ+D QTLP+NHSS RQLKR+SFH IP SY ELLSQLFQG+
Subjt:  KVEAVVSKRKGKYQQGFVAYSPSTVSINSLTLQNDSQTLPDNHSSGRQLKRKSFHLIPISYIELLSQLFQGH

A0A6J1E2J7 Ribonuclease H6.1e-0430.97Show/hide
Query:  SPSTVSINSLTLQNDSQTLPDNHSSGRQLKRKSFHLIPISYIELLSQLFQ---------------------------------GHSTENYTSLKHKVQVL
        +P++ +      Q+++    +  ++    K+  F  IP++Y ELL QLFQ                                 GHSTEN T+LK++VQ L
Subjt:  SPSTVSINSLTLQNDSQTLPDNHSSGRQLKRKSFHLIPISYIELLSQLFQ---------------------------------GHSTENYTSLKHKVQVL

Query:  MKAGWLKFSKEDG
        +KAGWL F KE+G
Subjt:  MKAGWLKFSKEDG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGAATTTAATGCTGAGCTAAAGAATATTGGAGACGAAATCCACGAACGGGTCATGGAAGAATTGAATATTGAGCTAAAGAAAATAAGAGACAAGATTCAAGAACA
AGTCATGAAGGTGCAGAATGTAGAGCTAAAGAAGATGAGACAAGACATCGATAATATTCAGGAGCAAGTCATGGAAATTTTAAATGTCTTAAAGAATATTGTTACAGCTA
GAGATATTTCTCAACCTAACAATTTAGTCGAATCTCATAATAATTCACCACCTAGGGAGGACTCACCTCTTTGTCAATCAAAAAAGGGCTTCCCTCAGCACAGTTCCTCA
CATGACGCTCAGCTTTCCAAGAAAGGCCAAGAAGTTCCTACAAACTGCCAGGTTGAATTGACATTCAAAGATGGACAAACATCAAAGGTCAATTACTCAGATAATTTAAA
AGGTAAAGGAAAAGAAAATGTTACCAATGGAAATGCTGAAGGAACTGCAGGGAAAGAATATGCTCAAAGATGGGGAGAAGCAACAGAACAGTTGCCGGTGCCTTTAATTA
ATAAAGAGCCGCATCCTGAAACGAATAGAAGCTCTATTAAAAGGAAAAATAAAGTCGAGGCAGTAGTTTCGAAGCGCAAGGGGAAGTACCAACAAGGATTTGTGGCATAC
AGTCCTTCTACGGTATCCATAAACTCATTGACTCTGCAGAATGATTCACAAACATTACCTGACAATCATAGTAGTGGGAGACAACTAAAGCGAAAGAGCTTTCATTTGAT
CCCAATATCCTATATCGAGTTGTTATCCCAATTATTCCAAGGTCATTCAACTGAGAACTATACTTCACTGAAGCATAAAGTGCAAGTGCTGATGAAGGCAGGATGGCTAA
AGTTTTCAAAGGAAGATGGTCAACACATGAAGCACTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAAGAATTTAATGCTGAGCTAAAGAATATTGGAGACGAAATCCACGAACGGGTCATGGAAGAATTGAATATTGAGCTAAAGAAAATAAGAGACAAGATTCAAGAACA
AGTCATGAAGGTGCAGAATGTAGAGCTAAAGAAGATGAGACAAGACATCGATAATATTCAGGAGCAAGTCATGGAAATTTTAAATGTCTTAAAGAATATTGTTACAGCTA
GAGATATTTCTCAACCTAACAATTTAGTCGAATCTCATAATAATTCACCACCTAGGGAGGACTCACCTCTTTGTCAATCAAAAAAGGGCTTCCCTCAGCACAGTTCCTCA
CATGACGCTCAGCTTTCCAAGAAAGGCCAAGAAGTTCCTACAAACTGCCAGGTTGAATTGACATTCAAAGATGGACAAACATCAAAGGTCAATTACTCAGATAATTTAAA
AGGTAAAGGAAAAGAAAATGTTACCAATGGAAATGCTGAAGGAACTGCAGGGAAAGAATATGCTCAAAGATGGGGAGAAGCAACAGAACAGTTGCCGGTGCCTTTAATTA
ATAAAGAGCCGCATCCTGAAACGAATAGAAGCTCTATTAAAAGGAAAAATAAAGTCGAGGCAGTAGTTTCGAAGCGCAAGGGGAAGTACCAACAAGGATTTGTGGCATAC
AGTCCTTCTACGGTATCCATAAACTCATTGACTCTGCAGAATGATTCACAAACATTACCTGACAATCATAGTAGTGGGAGACAACTAAAGCGAAAGAGCTTTCATTTGAT
CCCAATATCCTATATCGAGTTGTTATCCCAATTATTCCAAGGTCATTCAACTGAGAACTATACTTCACTGAAGCATAAAGTGCAAGTGCTGATGAAGGCAGGATGGCTAA
AGTTTTCAAAGGAAGATGGTCAACACATGAAGCACTAG
Protein sequenceShow/hide protein sequence
MEEFNAELKNIGDEIHERVMEELNIELKKIRDKIQEQVMKVQNVELKKMRQDIDNIQEQVMEILNVLKNIVTARDISQPNNLVESHNNSPPREDSPLCQSKKGFPQHSSS
HDAQLSKKGQEVPTNCQVELTFKDGQTSKVNYSDNLKGKGKENVTNGNAEGTAGKEYAQRWGEATEQLPVPLINKEPHPETNRSSIKRKNKVEAVVSKRKGKYQQGFVAY
SPSTVSINSLTLQNDSQTLPDNHSSGRQLKRKSFHLIPISYIELLSQLFQGHSTENYTSLKHKVQVLMKAGWLKFSKEDGQHMKH