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Moc04g21370 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc04g21370
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionReverse transcriptase
Genome locationchr4:15570806..15571324
RNA-Seq ExpressionMoc04g21370
SyntenyMoc04g21370
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032849.1 reverse transcriptase [Cucumis melo var. makuwa]4.1e-6874.27Show/hide
Query:  CSAEMTAQLFFINFVKLWGVLESIVSDRDGHFTGTFGTELSRLLGSNLNMSSIYHLQTDGQTERFNSMLEEYLRHFIDAQQKNWIQMLDVAQFCLNCQKS
        CSAE TAQLFF + VKLWGV  SIVSDRDG F G+F TEL   LG++LN+SS YH QTDGQTERFNSMLEEYLRHF++A+QKNW+Q+LDVAQFC N Q S
Subjt:  CSAEMTAQLFFINFVKLWGVLESIVSDRDGHFTGTFGTELSRLLGSNLNMSSIYHLQTDGQTERFNSMLEEYLRHFIDAQQKNWIQMLDVAQFCLNCQKS

Query:  TTTGRTPFKIVCGRQLMLPHVVDHLYVGKSPQAYNFTKEWRQSTEVARAYLEKASKHMKKWADKKRRPLEF
        ++TGR+PF+IV GRQ +LPH+VDH + GK+PQA NFTKEWRQ+ ++ARAYLEKASK MKKWADKKRRPLEF
Subjt:  TTTGRTPFKIVCGRQLMLPHVVDHLYVGKSPQAYNFTKEWRQSTEVARAYLEKASKHMKKWADKKRRPLEF

KAA0037220.1 reverse transcriptase [Cucumis melo var. makuwa]4.1e-6874.27Show/hide
Query:  CSAEMTAQLFFINFVKLWGVLESIVSDRDGHFTGTFGTELSRLLGSNLNMSSIYHLQTDGQTERFNSMLEEYLRHFIDAQQKNWIQMLDVAQFCLNCQKS
        CSAE TAQLFF + VKLWGV  SIVSDRDG F G+F TEL   LG++LN+SS YH QTDGQTERFNSMLEEYLRHF++A+QKNW+Q+LDVAQFC N Q S
Subjt:  CSAEMTAQLFFINFVKLWGVLESIVSDRDGHFTGTFGTELSRLLGSNLNMSSIYHLQTDGQTERFNSMLEEYLRHFIDAQQKNWIQMLDVAQFCLNCQKS

Query:  TTTGRTPFKIVCGRQLMLPHVVDHLYVGKSPQAYNFTKEWRQSTEVARAYLEKASKHMKKWADKKRRPLEF
        ++TGR+PF+IV GRQ +LPH+VDH + GK+PQA NFTKEWRQ+ ++ARAYLEKASK MKKWADKKRRPLEF
Subjt:  TTTGRTPFKIVCGRQLMLPHVVDHLYVGKSPQAYNFTKEWRQSTEVARAYLEKASKHMKKWADKKRRPLEF

KAA0063412.1 reverse transcriptase [Cucumis melo var. makuwa]4.1e-6874.27Show/hide
Query:  CSAEMTAQLFFINFVKLWGVLESIVSDRDGHFTGTFGTELSRLLGSNLNMSSIYHLQTDGQTERFNSMLEEYLRHFIDAQQKNWIQMLDVAQFCLNCQKS
        CSAE TAQLFF + VKLWGV  SIVSDRDG F G+F TEL   LG++LN+SS YH QTDGQTERFNSMLEEYLRHF++A+QKNW+Q+LDVAQFC N Q S
Subjt:  CSAEMTAQLFFINFVKLWGVLESIVSDRDGHFTGTFGTELSRLLGSNLNMSSIYHLQTDGQTERFNSMLEEYLRHFIDAQQKNWIQMLDVAQFCLNCQKS

Query:  TTTGRTPFKIVCGRQLMLPHVVDHLYVGKSPQAYNFTKEWRQSTEVARAYLEKASKHMKKWADKKRRPLEF
        ++TGR+PF+IV GRQ +LPH+VDH + GK+PQA NFTKEWRQ+ ++ARAYLEKASK MKKWADKKRRPLEF
Subjt:  TTTGRTPFKIVCGRQLMLPHVVDHLYVGKSPQAYNFTKEWRQSTEVARAYLEKASKHMKKWADKKRRPLEF

KAA0067557.1 reverse transcriptase [Cucumis melo var. makuwa]4.1e-6874.27Show/hide
Query:  CSAEMTAQLFFINFVKLWGVLESIVSDRDGHFTGTFGTELSRLLGSNLNMSSIYHLQTDGQTERFNSMLEEYLRHFIDAQQKNWIQMLDVAQFCLNCQKS
        CSAE TAQLFF + VKLWGV  SIVSDRDG F G+F TEL   LG++LN+SS YH QTDGQTERFNSMLEEYLRHF++A+QKNW+Q+LDVAQFC N Q S
Subjt:  CSAEMTAQLFFINFVKLWGVLESIVSDRDGHFTGTFGTELSRLLGSNLNMSSIYHLQTDGQTERFNSMLEEYLRHFIDAQQKNWIQMLDVAQFCLNCQKS

Query:  TTTGRTPFKIVCGRQLMLPHVVDHLYVGKSPQAYNFTKEWRQSTEVARAYLEKASKHMKKWADKKRRPLEF
        ++TGR+PF+IV GRQ +LPH+VDH + GK+PQA NFTKEWRQ+ ++ARAYLEKASK MKKWADKKRRPLEF
Subjt:  TTTGRTPFKIVCGRQLMLPHVVDHLYVGKSPQAYNFTKEWRQSTEVARAYLEKASKHMKKWADKKRRPLEF

TYK28713.1 reverse transcriptase [Cucumis melo var. makuwa]4.1e-6874.27Show/hide
Query:  CSAEMTAQLFFINFVKLWGVLESIVSDRDGHFTGTFGTELSRLLGSNLNMSSIYHLQTDGQTERFNSMLEEYLRHFIDAQQKNWIQMLDVAQFCLNCQKS
        CSAE TAQLFF + VKLWGV  SIVSDRDG F G+F TEL   LG++LN+SS YH QTDGQTERFNSMLEEYLRHF++A+QKNW+Q+LDVAQFC N Q S
Subjt:  CSAEMTAQLFFINFVKLWGVLESIVSDRDGHFTGTFGTELSRLLGSNLNMSSIYHLQTDGQTERFNSMLEEYLRHFIDAQQKNWIQMLDVAQFCLNCQKS

Query:  TTTGRTPFKIVCGRQLMLPHVVDHLYVGKSPQAYNFTKEWRQSTEVARAYLEKASKHMKKWADKKRRPLEF
        ++TGR+PF+IV GRQ +LPH+VDH + GK+PQA NFTKEWRQ+ ++ARAYLEKASK MKKWADKKRRPLEF
Subjt:  TTTGRTPFKIVCGRQLMLPHVVDHLYVGKSPQAYNFTKEWRQSTEVARAYLEKASKHMKKWADKKRRPLEF

TrEMBL top hitse value%identityAlignment
A0A5A7T0E2 Reverse transcriptase2.0e-6874.27Show/hide
Query:  CSAEMTAQLFFINFVKLWGVLESIVSDRDGHFTGTFGTELSRLLGSNLNMSSIYHLQTDGQTERFNSMLEEYLRHFIDAQQKNWIQMLDVAQFCLNCQKS
        CSAE TAQLFF + VKLWGV  SIVSDRDG F G+F TEL   LG++LN+SS YH QTDGQTERFNSMLEEYLRHF++A+QKNW+Q+LDVAQFC N Q S
Subjt:  CSAEMTAQLFFINFVKLWGVLESIVSDRDGHFTGTFGTELSRLLGSNLNMSSIYHLQTDGQTERFNSMLEEYLRHFIDAQQKNWIQMLDVAQFCLNCQKS

Query:  TTTGRTPFKIVCGRQLMLPHVVDHLYVGKSPQAYNFTKEWRQSTEVARAYLEKASKHMKKWADKKRRPLEF
        ++TGR+PF+IV GRQ +LPH+VDH + GK+PQA NFTKEWRQ+ ++ARAYLEKASK MKKWADKKRRPLEF
Subjt:  TTTGRTPFKIVCGRQLMLPHVVDHLYVGKSPQAYNFTKEWRQSTEVARAYLEKASKHMKKWADKKRRPLEF

A0A5A7UXR6 Reverse transcriptase2.0e-6874.27Show/hide
Query:  CSAEMTAQLFFINFVKLWGVLESIVSDRDGHFTGTFGTELSRLLGSNLNMSSIYHLQTDGQTERFNSMLEEYLRHFIDAQQKNWIQMLDVAQFCLNCQKS
        CSAE TAQLFF + VKLWGV  SIVSDRDG F G+F TEL   LG++LN+SS YH QTDGQTERFNSMLEEYLRHF++A+QKNW+Q+LDVAQFC N Q S
Subjt:  CSAEMTAQLFFINFVKLWGVLESIVSDRDGHFTGTFGTELSRLLGSNLNMSSIYHLQTDGQTERFNSMLEEYLRHFIDAQQKNWIQMLDVAQFCLNCQKS

Query:  TTTGRTPFKIVCGRQLMLPHVVDHLYVGKSPQAYNFTKEWRQSTEVARAYLEKASKHMKKWADKKRRPLEF
        ++TGR+PF+IV GRQ +LPH+VDH + GK+PQA NFTKEWRQ+ ++ARAYLEKASK MKKWADKKRRPLEF
Subjt:  TTTGRTPFKIVCGRQLMLPHVVDHLYVGKSPQAYNFTKEWRQSTEVARAYLEKASKHMKKWADKKRRPLEF

A0A5D3BRZ6 Reverse transcriptase2.0e-6874.27Show/hide
Query:  CSAEMTAQLFFINFVKLWGVLESIVSDRDGHFTGTFGTELSRLLGSNLNMSSIYHLQTDGQTERFNSMLEEYLRHFIDAQQKNWIQMLDVAQFCLNCQKS
        CSAE TAQLFF + VKLWGV  SIVSDRDG F G+F TEL   LG++LN+SS YH QTDGQTERFNSMLEEYLRHF++A+QKNW+Q+LDVAQFC N Q S
Subjt:  CSAEMTAQLFFINFVKLWGVLESIVSDRDGHFTGTFGTELSRLLGSNLNMSSIYHLQTDGQTERFNSMLEEYLRHFIDAQQKNWIQMLDVAQFCLNCQKS

Query:  TTTGRTPFKIVCGRQLMLPHVVDHLYVGKSPQAYNFTKEWRQSTEVARAYLEKASKHMKKWADKKRRPLEF
        ++TGR+PF+IV GRQ +LPH+VDH + GK+PQA NFTKEWRQ+ ++ARAYLEKASK MKKWADKKRRPLEF
Subjt:  TTTGRTPFKIVCGRQLMLPHVVDHLYVGKSPQAYNFTKEWRQSTEVARAYLEKASKHMKKWADKKRRPLEF

A0A5D3C4R1 Reverse transcriptase2.0e-6874.27Show/hide
Query:  CSAEMTAQLFFINFVKLWGVLESIVSDRDGHFTGTFGTELSRLLGSNLNMSSIYHLQTDGQTERFNSMLEEYLRHFIDAQQKNWIQMLDVAQFCLNCQKS
        CSAE TAQLFF + VKLWGV  SIVSDRDG F G+F TEL   LG++LN+SS YH QTDGQTERFNSMLEEYLRHF++A+QKNW+Q+LDVAQFC N Q S
Subjt:  CSAEMTAQLFFINFVKLWGVLESIVSDRDGHFTGTFGTELSRLLGSNLNMSSIYHLQTDGQTERFNSMLEEYLRHFIDAQQKNWIQMLDVAQFCLNCQKS

Query:  TTTGRTPFKIVCGRQLMLPHVVDHLYVGKSPQAYNFTKEWRQSTEVARAYLEKASKHMKKWADKKRRPLEF
        ++TGR+PF+IV GRQ +LPH+VDH + GK+PQA NFTKEWRQ+ ++ARAYLEKASK MKKWADKKRRPLEF
Subjt:  TTTGRTPFKIVCGRQLMLPHVVDHLYVGKSPQAYNFTKEWRQSTEVARAYLEKASKHMKKWADKKRRPLEF

A0A5D3CS04 Reverse transcriptase2.0e-6873.68Show/hide
Query:  CSAEMTAQLFFINFVKLWGVLESIVSDRDGHFTGTFGTELSRLLGSNLNMSSIYHLQTDGQTERFNSMLEEYLRHFIDAQQKNWIQMLDVAQFCLNCQKS
        CSAEMTAQLFF + VKLWGVL SIVSDRDG F G+F TEL   LG++LN+SS YH QTDGQT+RFN MLEEYLRHF++A+QKNW+Q+LDVAQFC N Q S
Subjt:  CSAEMTAQLFFINFVKLWGVLESIVSDRDGHFTGTFGTELSRLLGSNLNMSSIYHLQTDGQTERFNSMLEEYLRHFIDAQQKNWIQMLDVAQFCLNCQKS

Query:  TTTGRTPFKIVCGRQLMLPHVVDHLYVGKSPQAYNFTKEWRQSTEVARAYLEKASKHMKKWADKKRRPLEF
        ++TGR+PF+IV GRQ +LPH+VDH + GK+PQA NFTKEW+Q+ ++ARAYLEKASK MKKWADKKRRPLEF
Subjt:  TTTGRTPFKIVCGRQLMLPHVVDHLYVGKSPQAYNFTKEWRQSTEVARAYLEKASKHMKKWADKKRRPLEF

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein2.2e-0826.63Show/hide
Query:  SAEMTAQLFFINFVKLWGVLESIVSDRDGHFTGTFGTELSRLLGSNLNMSSIYHLQTDGQTERFNSMLEEYLRHFIDAQQKNWIQMLDVAQFCLNCQKST
        +AE TA++F    +  +G  + I++D D  FT     + +      +  S  Y  QTDGQTER N  +E+ LR         W+  + + Q   N    +
Subjt:  SAEMTAQLFFINFVKLWGVLESIVSDRDGHFTGTFGTELSRLLGSNLNMSSIYHLQTDGQTERFNSMLEEYLRHFIDAQQKNWIQMLDVAQFCLNCQKST

Query:  TTGRTPFKIVCGRQLMLPHVVDHLYVGKSPQAYNFTKEWRQSTEVARAYLEKASKHMKKWADKKRRPLE
         T  TPF+IV      L  +    +  K+ +    ++E  Q  +  + +L   +  MKK+ D K + +E
Subjt:  TTGRTPFKIVCGRQLMLPHVVDHLYVGKSPQAYNFTKEWRQSTEVARAYLEKASKHMKKWADKKRRPLE

P0CT41 Transposon Tf2-12 polyprotein2.2e-0826.63Show/hide
Query:  SAEMTAQLFFINFVKLWGVLESIVSDRDGHFTGTFGTELSRLLGSNLNMSSIYHLQTDGQTERFNSMLEEYLRHFIDAQQKNWIQMLDVAQFCLNCQKST
        +AE TA++F    +  +G  + I++D D  FT     + +      +  S  Y  QTDGQTER N  +E+ LR         W+  + + Q   N    +
Subjt:  SAEMTAQLFFINFVKLWGVLESIVSDRDGHFTGTFGTELSRLLGSNLNMSSIYHLQTDGQTERFNSMLEEYLRHFIDAQQKNWIQMLDVAQFCLNCQKST

Query:  TTGRTPFKIVCGRQLMLPHVVDHLYVGKSPQAYNFTKEWRQSTEVARAYLEKASKHMKKWADKKRRPLE
         T  TPF+IV      L  +    +  K+ +    ++E  Q  +  + +L   +  MKK+ D K + +E
Subjt:  TTGRTPFKIVCGRQLMLPHVVDHLYVGKSPQAYNFTKEWRQSTEVARAYLEKASKHMKKWADKKRRPLE

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein3.6e-1130.95Show/hide
Query:  AEMTAQLFFINFVKLWGVLESIVSDRDGHFTGTFGTELSRLLGSNLNMSSIYHLQTDGQTERFNSMLEEYLRHFIDAQQKNWIQMLDVAQFCLNCQKSTT
        A     L F       G   +I SDRD   T     EL++ LG    MSS  H QTDGQ+ER    L   LR ++    +NW   L   +F  N   + T
Subjt:  AEMTAQLFFINFVKLWGVLESIVSDRDGHFTGTFGTELSRLLGSNLNMSSIYHLQTDGQTERFNSMLEEYLRHFIDAQQKNWIQMLDVAQFCLNCQKSTT

Query:  TGRTPFKIVCGRQLMLPHV-VDHLYVGKSPQAYNFTKEWRQSTEVARAYLEKASKHMKKWADKKRRPL
         G++PF+I  G     P +  D     +S  A    K  +  T   +  LE A   M+   +++R+PL
Subjt:  TGRTPFKIVCGRQLMLPHV-VDHLYVGKSPQAYNFTKEWRQSTEVARAYLEKASKHMKKWADKKRRPL

Q99315 Transposon Ty3-G Gag-Pol polyprotein1.1e-1030.95Show/hide
Query:  AEMTAQLFFINFVKLWGVLESIVSDRDGHFTGTFGTELSRLLGSNLNMSSIYHLQTDGQTERFNSMLEEYLRHFIDAQQKNWIQMLDVAQFCLNCQKSTT
        A     L F       G   +I SDRD   T     EL++ LG    MSS  H QTDGQ+ER    L   LR +     +NW   L   +F  N   + T
Subjt:  AEMTAQLFFINFVKLWGVLESIVSDRDGHFTGTFGTELSRLLGSNLNMSSIYHLQTDGQTERFNSMLEEYLRHFIDAQQKNWIQMLDVAQFCLNCQKSTT

Query:  TGRTPFKIVCGRQLMLPHV-VDHLYVGKSPQAYNFTKEWRQSTEVARAYLEKASKHMKKWADKKRRPL
         G++PF+I  G     P +  D     +S  A    K  +  T   +  LE A   M+   +++R+PL
Subjt:  TGRTPFKIVCGRQLMLPHV-VDHLYVGKSPQAYNFTKEWRQSTEVARAYLEKASKHMKKWADKKRRPL

Q9UR07 Transposon Tf2-11 polyprotein2.2e-0826.63Show/hide
Query:  SAEMTAQLFFINFVKLWGVLESIVSDRDGHFTGTFGTELSRLLGSNLNMSSIYHLQTDGQTERFNSMLEEYLRHFIDAQQKNWIQMLDVAQFCLNCQKST
        +AE TA++F    +  +G  + I++D D  FT     + +      +  S  Y  QTDGQTER N  +E+ LR         W+  + + Q   N    +
Subjt:  SAEMTAQLFFINFVKLWGVLESIVSDRDGHFTGTFGTELSRLLGSNLNMSSIYHLQTDGQTERFNSMLEEYLRHFIDAQQKNWIQMLDVAQFCLNCQKST

Query:  TTGRTPFKIVCGRQLMLPHVVDHLYVGKSPQAYNFTKEWRQSTEVARAYLEKASKHMKKWADKKRRPLE
         T  TPF+IV      L  +    +  K+ +    ++E  Q  +  + +L   +  MKK+ D K + +E
Subjt:  TTGRTPFKIVCGRQLMLPHVVDHLYVGKSPQAYNFTKEWRQSTEVARAYLEKASKHMKKWADKKRRPLE

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGCTCGGCCGAAATGACTGCACAGTTATTTTTCATAAATTTTGTGAAACTATGGGGTGTCCTGGAGAGCATTGTGAGCGACAGAGACGGACACTTCACAGGG
ACATTCGGGACAGAACTTTCCCGCCTATTGGGATCCAATTTGAACATGTCTTCGATTTATCACCTACAGACAGACGGACAGACGGAACGCTTCAACAGTATGCTA
GAAGAGTACCTCCGCCACTTTATTGATGCTCAGCAAAAGAACTGGATCCAGATGCTCGATGTAGCTCAATTCTGTTTGAATTGCCAAAAGAGCACCACCACAGGA
AGAACCCCTTTCAAAATCGTGTGTGGGCGACAACTTATGTTACCTCATGTTGTCGACCATCTTTATGTGGGAAAGAGCCCTCAAGCCTACAATTTCACTAAGGAA
TGGCGTCAATCCACCGAAGTGGCCCGAGCATACCTGGAGAAGGCGTCTAAACACATGAAAAAGTGGGCAGACAAAAAGCGAAGACCATTAGAATTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTGCTCGGCCGAAATGACTGCACAGTTATTTTTCATAAATTTTGTGAAACTATGGGGTGTCCTGGAGAGCATTGTGAGCGACAGAGACGGACACTTCACAGGG
ACATTCGGGACAGAACTTTCCCGCCTATTGGGATCCAATTTGAACATGTCTTCGATTTATCACCTACAGACAGACGGACAGACGGAACGCTTCAACAGTATGCTA
GAAGAGTACCTCCGCCACTTTATTGATGCTCAGCAAAAGAACTGGATCCAGATGCTCGATGTAGCTCAATTCTGTTTGAATTGCCAAAAGAGCACCACCACAGGA
AGAACCCCTTTCAAAATCGTGTGTGGGCGACAACTTATGTTACCTCATGTTGTCGACCATCTTTATGTGGGAAAGAGCCCTCAAGCCTACAATTTCACTAAGGAA
TGGCGTCAATCCACCGAAGTGGCCCGAGCATACCTGGAGAAGGCGTCTAAACACATGAAAAAGTGGGCAGACAAAAAGCGAAGACCATTAGAATTCTAG
Protein sequenceShow/hide protein sequence
MCSAEMTAQLFFINFVKLWGVLESIVSDRDGHFTGTFGTELSRLLGSNLNMSSIYHLQTDGQTERFNSMLEEYLRHFIDAQQKNWIQMLDVAQFCLNCQKSTTTG
RTPFKIVCGRQLMLPHVVDHLYVGKSPQAYNFTKEWRQSTEVARAYLEKASKHMKKWADKKRRPLEF