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Moc04g21590 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc04g21590
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr4:15710981..15711475
RNA-Seq ExpressionMoc04g21590
SyntenyMoc04g21590
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022155016.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111022160 [Momordica charantia]3.0e-5264.63Show/hide
Query:  MADIPPPDPVDPPAVNGNMRDHARNNEFNHIQMADNRDVAMREYAAMAFQNFDSGIVNPIPAHANFELKPMMFQMLQTIRHFGWQEHEDPHDHLKSFIQI
        M +IPP +P DPP VNGNM                            AFQN DS I+NPIP  ANFELKP+MFQMLQT+  FG +EH+DPHDHLK+F QI
Subjt:  MADIPPPDPVDPPAVNGNMRDHARNNEFNHIQMADNRDVAMREYAAMAFQNFDSGIVNPIPAHANFELKPMMFQMLQTIRHFGWQEHEDPHDHLKSFIQI

Query:  ANAFRLPGITDNALRLTLFPFSLKDQARAWLNAFPPGSITTWGSLVEKFLTKFFPPTRHADIRE
        A AFR P ITD+ALRLTLFPFSLKD+AR WLN FPPGSITTW SLVEKFLTK+FPPTRHADI E
Subjt:  ANAFRLPGITDNALRLTLFPFSLKDQARAWLNAFPPGSITTWGSLVEKFLTKFFPPTRHADIRE

XP_022157400.1 uncharacterized protein LOC111024107 [Momordica charantia]4.6e-4562.68Show/hide
Query:  ARNNEFNHIQMADNRDVAMREYAAMAFQNFDSGIVNPIPAHANFELKPMMFQMLQTIRHFGWQEHEDPHDHLKSFIQIANAFRLPGITDNALRLTLFPFS
        A N   N I +AD +D AMR+YAA   ++ +S ++NP+PA A FE KPMM QML  I  FG  EHEDP  HLKSFI++AN  RLPGI+D+ALRLTLFPFS
Subjt:  ARNNEFNHIQMADNRDVAMREYAAMAFQNFDSGIVNPIPAHANFELKPMMFQMLQTIRHFGWQEHEDPHDHLKSFIQIANAFRLPGITDNALRLTLFPFS

Query:  LKDQARAWLNAFPPGSITTWGSLVEKFLTKFFPPTRHADIRE
        L  QA AWLNAFP G+ITTW  +V+KFL K+FPPTR+AD+RE
Subjt:  LKDQARAWLNAFPPGSITTWGSLVEKFLTKFFPPTRHADIRE

XP_022158408.1 uncharacterized protein LOC111024897, partial [Momordica charantia]1.1e-8192.07Show/hide
Query:  MADIPPPDPVDPPAVNGNMRDHARNNEFNHIQMADNRDVAMREYAAMAFQNFDSGIVNPIPAHANFELKPMMFQMLQTIRHFGWQEHEDPHDHLKSFIQI
        MADIPP DPVDPPAVNGNMRDHARN+EFN+IQMADNRDVAMREYAA AFQNFDSGIVNPIPAH NFELKPMMFQMLQTI HFG QEHEDPHDHLKSFIQI
Subjt:  MADIPPPDPVDPPAVNGNMRDHARNNEFNHIQMADNRDVAMREYAAMAFQNFDSGIVNPIPAHANFELKPMMFQMLQTIRHFGWQEHEDPHDHLKSFIQI

Query:  ANAFRLPGITDNALRLTLFPFSLKDQARAWLNAFPPGSITTWGSLVEKFLTKFFPPTRHADIRE
        ANAFRLPGITD+A  LTLFPFSLKDQAR  LNAFP GSITTWGSLVEKFLTKFFPPTRHADIRE
Subjt:  ANAFRLPGITDNALRLTLFPFSLKDQARAWLNAFPPGSITTWGSLVEKFLTKFFPPTRHADIRE

XP_022159074.1 uncharacterized protein LOC111025516 [Momordica charantia]8.7e-4462.68Show/hide
Query:  ARNNEFNHIQMADNRDVAMREYAAMAFQNFDSGIVNPIPAHANFELKPMMFQMLQTIRHFGWQEHEDPHDHLKSFIQIANAFRLPGITDNALRLTLFPFS
        A N   N I MAD RD AMR+YAA   ++ +S ++NP+P  A FE KPMM QML TI  FG  EHEDP  HLKSFI++AN FRLPGI+D+ALRLTLF FS
Subjt:  ARNNEFNHIQMADNRDVAMREYAAMAFQNFDSGIVNPIPAHANFELKPMMFQMLQTIRHFGWQEHEDPHDHLKSFIQIANAFRLPGITDNALRLTLFPFS

Query:  LKDQARAWLNAFPPGSITTWGSLVEKFLTKFFPPTRHADIRE
        L  QA AWLNAF   +ITTW  +V+KFL K+FPPTR+AD+RE
Subjt:  LKDQARAWLNAFPPGSITTWGSLVEKFLTKFFPPTRHADIRE

XP_022159235.1 uncharacterized protein LOC111025653 [Momordica charantia]1.8e-4461.97Show/hide
Query:  ARNNEFNHIQMADNRDVAMREYAAMAFQNFDSGIVNPIPAHANFELKPMMFQMLQTIRHFGWQEHEDPHDHLKSFIQIANAFRLPGITDNALRLTLFPFS
        A N   N I +AD RD AMR+YAA   ++ +S ++N  PA A FE KPMM QML  I  FG  EHEDP  HLKSFI++AN FRLPGI+D+ALRLTLFPFS
Subjt:  ARNNEFNHIQMADNRDVAMREYAAMAFQNFDSGIVNPIPAHANFELKPMMFQMLQTIRHFGWQEHEDPHDHLKSFIQIANAFRLPGITDNALRLTLFPFS

Query:  LKDQARAWLNAFPPGSITTWGSLVEKFLTKFFPPTRHADIRE
        +  QA AWLNAFP  +ITTW  +V+KFL K+FPPTR+AD+RE
Subjt:  LKDQARAWLNAFPPGSITTWGSLVEKFLTKFFPPTRHADIRE

TrEMBL top hitse value%identityAlignment
A0A6J1DQF5 LOW QUALITY PROTEIN: uncharacterized protein LOC1110221601.4e-5264.63Show/hide
Query:  MADIPPPDPVDPPAVNGNMRDHARNNEFNHIQMADNRDVAMREYAAMAFQNFDSGIVNPIPAHANFELKPMMFQMLQTIRHFGWQEHEDPHDHLKSFIQI
        M +IPP +P DPP VNGNM                            AFQN DS I+NPIP  ANFELKP+MFQMLQT+  FG +EH+DPHDHLK+F QI
Subjt:  MADIPPPDPVDPPAVNGNMRDHARNNEFNHIQMADNRDVAMREYAAMAFQNFDSGIVNPIPAHANFELKPMMFQMLQTIRHFGWQEHEDPHDHLKSFIQI

Query:  ANAFRLPGITDNALRLTLFPFSLKDQARAWLNAFPPGSITTWGSLVEKFLTKFFPPTRHADIRE
        A AFR P ITD+ALRLTLFPFSLKD+AR WLN FPPGSITTW SLVEKFLTK+FPPTRHADI E
Subjt:  ANAFRLPGITDNALRLTLFPFSLKDQARAWLNAFPPGSITTWGSLVEKFLTKFFPPTRHADIRE

A0A6J1DSZ5 uncharacterized protein LOC1110241072.2e-4562.68Show/hide
Query:  ARNNEFNHIQMADNRDVAMREYAAMAFQNFDSGIVNPIPAHANFELKPMMFQMLQTIRHFGWQEHEDPHDHLKSFIQIANAFRLPGITDNALRLTLFPFS
        A N   N I +AD +D AMR+YAA   ++ +S ++NP+PA A FE KPMM QML  I  FG  EHEDP  HLKSFI++AN  RLPGI+D+ALRLTLFPFS
Subjt:  ARNNEFNHIQMADNRDVAMREYAAMAFQNFDSGIVNPIPAHANFELKPMMFQMLQTIRHFGWQEHEDPHDHLKSFIQIANAFRLPGITDNALRLTLFPFS

Query:  LKDQARAWLNAFPPGSITTWGSLVEKFLTKFFPPTRHADIRE
        L  QA AWLNAFP G+ITTW  +V+KFL K+FPPTR+AD+RE
Subjt:  LKDQARAWLNAFPPGSITTWGSLVEKFLTKFFPPTRHADIRE

A0A6J1DW02 uncharacterized protein LOC1110248975.1e-8292.07Show/hide
Query:  MADIPPPDPVDPPAVNGNMRDHARNNEFNHIQMADNRDVAMREYAAMAFQNFDSGIVNPIPAHANFELKPMMFQMLQTIRHFGWQEHEDPHDHLKSFIQI
        MADIPP DPVDPPAVNGNMRDHARN+EFN+IQMADNRDVAMREYAA AFQNFDSGIVNPIPAH NFELKPMMFQMLQTI HFG QEHEDPHDHLKSFIQI
Subjt:  MADIPPPDPVDPPAVNGNMRDHARNNEFNHIQMADNRDVAMREYAAMAFQNFDSGIVNPIPAHANFELKPMMFQMLQTIRHFGWQEHEDPHDHLKSFIQI

Query:  ANAFRLPGITDNALRLTLFPFSLKDQARAWLNAFPPGSITTWGSLVEKFLTKFFPPTRHADIRE
        ANAFRLPGITD+A  LTLFPFSLKDQAR  LNAFP GSITTWGSLVEKFLTKFFPPTRHADIRE
Subjt:  ANAFRLPGITDNALRLTLFPFSLKDQARAWLNAFPPGSITTWGSLVEKFLTKFFPPTRHADIRE

A0A6J1DY39 uncharacterized protein LOC1110256538.5e-4561.97Show/hide
Query:  ARNNEFNHIQMADNRDVAMREYAAMAFQNFDSGIVNPIPAHANFELKPMMFQMLQTIRHFGWQEHEDPHDHLKSFIQIANAFRLPGITDNALRLTLFPFS
        A N   N I +AD RD AMR+YAA   ++ +S ++N  PA A FE KPMM QML  I  FG  EHEDP  HLKSFI++AN FRLPGI+D+ALRLTLFPFS
Subjt:  ARNNEFNHIQMADNRDVAMREYAAMAFQNFDSGIVNPIPAHANFELKPMMFQMLQTIRHFGWQEHEDPHDHLKSFIQIANAFRLPGITDNALRLTLFPFS

Query:  LKDQARAWLNAFPPGSITTWGSLVEKFLTKFFPPTRHADIRE
        +  QA AWLNAFP  +ITTW  +V+KFL K+FPPTR+AD+RE
Subjt:  LKDQARAWLNAFPPGSITTWGSLVEKFLTKFFPPTRHADIRE

A0A6J1E1A9 uncharacterized protein LOC1110255164.2e-4462.68Show/hide
Query:  ARNNEFNHIQMADNRDVAMREYAAMAFQNFDSGIVNPIPAHANFELKPMMFQMLQTIRHFGWQEHEDPHDHLKSFIQIANAFRLPGITDNALRLTLFPFS
        A N   N I MAD RD AMR+YAA   ++ +S ++NP+P  A FE KPMM QML TI  FG  EHEDP  HLKSFI++AN FRLPGI+D+ALRLTLF FS
Subjt:  ARNNEFNHIQMADNRDVAMREYAAMAFQNFDSGIVNPIPAHANFELKPMMFQMLQTIRHFGWQEHEDPHDHLKSFIQIANAFRLPGITDNALRLTLFPFS

Query:  LKDQARAWLNAFPPGSITTWGSLVEKFLTKFFPPTRHADIRE
        L  QA AWLNAF   +ITTW  +V+KFL K+FPPTR+AD+RE
Subjt:  LKDQARAWLNAFPPGSITTWGSLVEKFLTKFFPPTRHADIRE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGATATTCCACCTCCTGATCCGGTTGATCCACCTGCTGTTAACGGTAATATGAGGGATCACGCAAGAAATAATGAATTCAACCATATCCAGATGGCGGACAACAG
AGACGTGGCAATGCGAGAATATGCCGCCATGGCTTTTCAGAACTTTGATTCAGGGATAGTCAATCCTATTCCAGCCCACGCAAACTTTGAGCTTAAACCAATGATGTTCC
AAATGTTGCAGACAATTAGACATTTTGGATGGCAGGAACATGAGGATCCACATGATCATCTAAAATCATTCATTCAAATTGCAAATGCATTTCGATTACCTGGTATAACA
GACAATGCTCTTAGACTAACACTTTTTCCATTTTCTTTGAAGGACCAAGCTAGAGCATGGCTCAATGCATTTCCACCGGGATCCATCACCACATGGGGGTCGTTAGTGGA
GAAGTTCTTAACAAAATTCTTCCCACCTACTCGCCACGCTGATATCAGAGAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCAGATATTCCACCTCCTGATCCGGTTGATCCACCTGCTGTTAACGGTAATATGAGGGATCACGCAAGAAATAATGAATTCAACCATATCCAGATGGCGGACAACAG
AGACGTGGCAATGCGAGAATATGCCGCCATGGCTTTTCAGAACTTTGATTCAGGGATAGTCAATCCTATTCCAGCCCACGCAAACTTTGAGCTTAAACCAATGATGTTCC
AAATGTTGCAGACAATTAGACATTTTGGATGGCAGGAACATGAGGATCCACATGATCATCTAAAATCATTCATTCAAATTGCAAATGCATTTCGATTACCTGGTATAACA
GACAATGCTCTTAGACTAACACTTTTTCCATTTTCTTTGAAGGACCAAGCTAGAGCATGGCTCAATGCATTTCCACCGGGATCCATCACCACATGGGGGTCGTTAGTGGA
GAAGTTCTTAACAAAATTCTTCCCACCTACTCGCCACGCTGATATCAGAGAGTAG
Protein sequenceShow/hide protein sequence
MADIPPPDPVDPPAVNGNMRDHARNNEFNHIQMADNRDVAMREYAAMAFQNFDSGIVNPIPAHANFELKPMMFQMLQTIRHFGWQEHEDPHDHLKSFIQIANAFRLPGIT
DNALRLTLFPFSLKDQARAWLNAFPPGSITTWGSLVEKFLTKFFPPTRHADIRE