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Moc04g21780 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc04g21780
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr4:15857724..15859247
RNA-Seq ExpressionMoc04g21780
SyntenyMoc04g21780
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0016020 - membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022149378.1 uncharacterized protein LOC111017809 [Momordica charantia]4.0e-4064.18Show/hide
Query:  FDISHAIISDNGKQFDNSKINGFCTQLGIKHFSSFPAHPQANGQVEDINKIIKHILKLRLEDIKGRWVEELPEVLWFYRTTMRNSTGKTQFALTVGSEAV
        F I +AI++DNGKQFDN+K   FC +LGI H SS PAHP+ANGQVE INKIIK  LK+RL+  KGRW EELPEVLW YRTT R STG+TQF+LT  SEAV
Subjt:  FDISHAIISDNGKQFDNSKINGFCTQLGIKHFSSFPAHPQANGQVEDINKIIKHILKLRLEDIKGRWVEELPEVLWFYRTTMRNSTGKTQFALTVGSEAV

Query:  VPVEIDLPTTQTEAFDIPTNDEELHLNLYLFKER
        VPVEI +PT + E ++   N+EEL L+L L +E+
Subjt:  VPVEIDLPTTQTEAFDIPTNDEELHLNLYLFKER

XP_022150038.1 uncharacterized protein K02A2.6-like [Momordica charantia]2.1e-4463.09Show/hide
Query:  FDISHAIISDNGKQFDNSKINGFCTQLGIKHFSSFPAHPQANGQVEDINKIIKHILKLRLEDIKGRWVEELPEVLWFYRTTMRNSTGKTQFALTVGSEAV
        F I +AI++DNGKQFDN+K   FC +LGI H +S PAHP+ANGQVE +NKIIK  LKLRL+  KGRWVEELPEVLW YRTT R STG+T F+L  GSE V
Subjt:  FDISHAIISDNGKQFDNSKINGFCTQLGIKHFSSFPAHPQANGQVEDINKIIKHILKLRLEDIKGRWVEELPEVLWFYRTTMRNSTGKTQFALTVGSEAV

Query:  VPVEIDLPTTQTEAFDIPTNDEELHLNLYLFKERRETSQLELAEYQRRM
        VPVEI +PT + E ++   N+EEL LNL   + +RE +QL LAEYQ RM
Subjt:  VPVEIDLPTTQTEAFDIPTNDEELHLNLYLFKERRETSQLELAEYQRRM

XP_022150100.1 uncharacterized protein LOC111018362 [Momordica charantia]4.0e-4062.69Show/hide
Query:  FDISHAIISDNGKQFDNSKINGFCTQLGIKHFSSFPAHPQANGQVEDINKIIKHILKLRLEDIKGRWVEELPEVLWFYRTTMRNSTGKTQFALTVGSEAV
        F I +AI++DNGKQFDN+K   FC+ +GI H SS PAHP+ANGQVE +NKIIK  LKLRL+  KGRW EELPEVLW YRTT+R STG+T F+L  GS+AV
Subjt:  FDISHAIISDNGKQFDNSKINGFCTQLGIKHFSSFPAHPQANGQVEDINKIIKHILKLRLEDIKGRWVEELPEVLWFYRTTMRNSTGKTQFALTVGSEAV

Query:  VPVEIDLPTTQTEAFDIPTNDEELHLNLYLFKER
        VPVEI +PT + E ++   N+EEL LNL L +E+
Subjt:  VPVEIDLPTTQTEAFDIPTNDEELHLNLYLFKER

XP_022154103.1 uncharacterized protein LOC111021439 [Momordica charantia]9.6e-4259.06Show/hide
Query:  FDISHAIISDNGKQFDNSKINGFCTQLGIKHFSSFPAHPQANGQVEDINKIIKHILKLRLEDIKGRWVEELPEVLWFYRTTMRNSTGKTQFALTVGSEAV
        F IS++IISDNGKQFDN+    FC +LGIKH  S P HPQANGQVE +NKIIK  LK ++E +KG W EELP  LW YRTT   STG+T F+L+ GSEAV
Subjt:  FDISHAIISDNGKQFDNSKINGFCTQLGIKHFSSFPAHPQANGQVEDINKIIKHILKLRLEDIKGRWVEELPEVLWFYRTTMRNSTGKTQFALTVGSEAV

Query:  VPVEIDLPTTQTEAFDIPTNDEELHLNLYLFKERRETSQLELAEYQRRM
        VPVEI LP+ + E F +  N+E + LNL L +E RET++L  AEY+ R+
Subjt:  VPVEIDLPTTQTEAFDIPTNDEELHLNLYLFKERRETSQLELAEYQRRM

XP_022158579.1 uncharacterized protein LOC111025033 [Momordica charantia]4.0e-4059.06Show/hide
Query:  FDISHAIISDNGKQFDNSKINGFCTQLGIKHFSSFPAHPQANGQVEDINKIIKHILKLRLEDIKGRWVEELPEVLWFYRTTMRNSTGKTQFALTVGSEAV
        F I +AIISDNGKQFDN+    F  +LGIKH  S PAHPQANGQVE +NK+IK  LK RLE +KG W EELP  LW Y TT   STG+T F+L+ GSEAV
Subjt:  FDISHAIISDNGKQFDNSKINGFCTQLGIKHFSSFPAHPQANGQVEDINKIIKHILKLRLEDIKGRWVEELPEVLWFYRTTMRNSTGKTQFALTVGSEAV

Query:  VPVEIDLPTTQTEAFDIPTNDEELHLNLYLFKERRETSQLELAEYQRRM
        VPVEI LP+ + E F +  N+E + LNL L +E RET++L  AEY+ R+
Subjt:  VPVEIDLPTTQTEAFDIPTNDEELHLNLYLFKERRETSQLELAEYQRRM

TrEMBL top hitse value%identityAlignment
A0A6J1D6M1 Ribonuclease H1.9e-4064.18Show/hide
Query:  FDISHAIISDNGKQFDNSKINGFCTQLGIKHFSSFPAHPQANGQVEDINKIIKHILKLRLEDIKGRWVEELPEVLWFYRTTMRNSTGKTQFALTVGSEAV
        F I +AI++DNGKQFDN+K   FC +LGI H SS PAHP+ANGQVE INKIIK  LK+RL+  KGRW EELPEVLW YRTT R STG+TQF+LT  SEAV
Subjt:  FDISHAIISDNGKQFDNSKINGFCTQLGIKHFSSFPAHPQANGQVEDINKIIKHILKLRLEDIKGRWVEELPEVLWFYRTTMRNSTGKTQFALTVGSEAV

Query:  VPVEIDLPTTQTEAFDIPTNDEELHLNLYLFKER
        VPVEI +PT + E ++   N+EEL L+L L +E+
Subjt:  VPVEIDLPTTQTEAFDIPTNDEELHLNLYLFKER

A0A6J1D7J6 Ribonuclease H1.9e-4062.69Show/hide
Query:  FDISHAIISDNGKQFDNSKINGFCTQLGIKHFSSFPAHPQANGQVEDINKIIKHILKLRLEDIKGRWVEELPEVLWFYRTTMRNSTGKTQFALTVGSEAV
        F I +AI++DNGKQFDN+K   FC+ +GI H SS PAHP+ANGQVE +NKIIK  LKLRL+  KGRW EELPEVLW YRTT+R STG+T F+L  GS+AV
Subjt:  FDISHAIISDNGKQFDNSKINGFCTQLGIKHFSSFPAHPQANGQVEDINKIIKHILKLRLEDIKGRWVEELPEVLWFYRTTMRNSTGKTQFALTVGSEAV

Query:  VPVEIDLPTTQTEAFDIPTNDEELHLNLYLFKER
        VPVEI +PT + E ++   N+EEL LNL L +E+
Subjt:  VPVEIDLPTTQTEAFDIPTNDEELHLNLYLFKER

A0A6J1D8D8 Ribonuclease H1.0e-4463.09Show/hide
Query:  FDISHAIISDNGKQFDNSKINGFCTQLGIKHFSSFPAHPQANGQVEDINKIIKHILKLRLEDIKGRWVEELPEVLWFYRTTMRNSTGKTQFALTVGSEAV
        F I +AI++DNGKQFDN+K   FC +LGI H +S PAHP+ANGQVE +NKIIK  LKLRL+  KGRWVEELPEVLW YRTT R STG+T F+L  GSE V
Subjt:  FDISHAIISDNGKQFDNSKINGFCTQLGIKHFSSFPAHPQANGQVEDINKIIKHILKLRLEDIKGRWVEELPEVLWFYRTTMRNSTGKTQFALTVGSEAV

Query:  VPVEIDLPTTQTEAFDIPTNDEELHLNLYLFKERRETSQLELAEYQRRM
        VPVEI +PT + E ++   N+EEL LNL   + +RE +QL LAEYQ RM
Subjt:  VPVEIDLPTTQTEAFDIPTNDEELHLNLYLFKERRETSQLELAEYQRRM

A0A6J1DJC7 Ribonuclease H2.1e-4260.4Show/hide
Query:  FDISHAIISDNGKQFDNSKINGFCTQLGIKHFSSFPAHPQANGQVEDINKIIKHILKLRLEDIKGRWVEELPEVLWFYRTTMRNSTGKTQFALTVGSEAV
        F IS++IISDNGKQFDN+    FC +LGIKH  S P HPQANGQVE +NKIIK  LK +LE +KG W EELP  LW YRTT   STG+T F+L+ GSEAV
Subjt:  FDISHAIISDNGKQFDNSKINGFCTQLGIKHFSSFPAHPQANGQVEDINKIIKHILKLRLEDIKGRWVEELPEVLWFYRTTMRNSTGKTQFALTVGSEAV

Query:  VPVEIDLPTTQTEAFDIPTNDEELHLNLYLFKERRETSQLELAEYQRRM
        VPVEI LP+ + E F +  NDE + LNL L +E RET++L  AEY+ R+
Subjt:  VPVEIDLPTTQTEAFDIPTNDEELHLNLYLFKERRETSQLELAEYQRRM

A0A6J1DZU0 Ribonuclease H1.9e-4059.06Show/hide
Query:  FDISHAIISDNGKQFDNSKINGFCTQLGIKHFSSFPAHPQANGQVEDINKIIKHILKLRLEDIKGRWVEELPEVLWFYRTTMRNSTGKTQFALTVGSEAV
        F I +AIISDNGKQFDN+    F  +LGIKH  S PAHPQANGQVE +NK+IK  LK RLE +KG W EELP  LW Y TT   STG+T F+L+ GSEAV
Subjt:  FDISHAIISDNGKQFDNSKINGFCTQLGIKHFSSFPAHPQANGQVEDINKIIKHILKLRLEDIKGRWVEELPEVLWFYRTTMRNSTGKTQFALTVGSEAV

Query:  VPVEIDLPTTQTEAFDIPTNDEELHLNLYLFKERRETSQLELAEYQRRM
        VPVEI LP+ + E F +  N+E + LNL L +E RET++L  AEY+ R+
Subjt:  VPVEIDLPTTQTEAFDIPTNDEELHLNLYLFKERRETSQLELAEYQRRM

SwissProt top hitse value%identityAlignment
P03359 Gag-Pol polyprotein5.7e-0541.46Show/hide
Query:  FDISHAIISDNGKQFDNSKINGFCTQLGIKHFSSFPAHPQANGQVEDINKIIKHIL-KLRLEDIKGRWVEELPEVLWFYRTT
        F I   + SDNG  F      G  TQLGI         PQ++GQVE +N+ IK  L KL LE     WV  LP  L   R T
Subjt:  FDISHAIISDNGKQFDNSKINGFCTQLGIKHFSSFPAHPQANGQVEDINKIIKHIL-KLRLEDIKGRWVEELPEVLWFYRTT

P10273 Gag-Pol polyprotein7.5e-0536.73Show/hide
Query:  FDISHAIISDNGKQFDNSKINGFCTQLGIKHFSSFPAHPQANGQVEDINKIIKHIL-KLRLEDIKGRWVEELPEVLWFYRTTMRNSTGKTQFALTVGS
        + I   + SDNG  F +       T LGI         PQ++GQVE +N+ IK  L KL LE     WV  LP VL+  R T     G T F +  G+
Subjt:  FDISHAIISDNGKQFDNSKINGFCTQLGIKHFSSFPAHPQANGQVEDINKIIKHIL-KLRLEDIKGRWVEELPEVLWFYRTTMRNSTGKTQFALTVGS

P21414 Gag-Pol polyprotein7.5e-0541.46Show/hide
Query:  FDISHAIISDNGKQFDNSKINGFCTQLGIKHFSSFPAHPQANGQVEDINKIIKHIL-KLRLEDIKGRWVEELPEVLWFYRTT
        F I   + SDNG  F      G  TQLGI         PQ++GQVE +N+ IK  L KL LE     WV  LP  L   R T
Subjt:  FDISHAIISDNGKQFDNSKINGFCTQLGIKHFSSFPAHPQANGQVEDINKIIKHIL-KLRLEDIKGRWVEELPEVLWFYRTT

P22382 Gag-Pol polyprotein2.2e-0437.5Show/hide
Query:  SDNGKQFDNSKINGFCTQLGIKHFSSFPAHPQANGQVEDINKIIKHILKLRLEDIK
        +DNG  F + ++   C  LGI+H    P +PQ+ G VE+ NK +K +++   ED K
Subjt:  SDNGKQFDNSKINGFCTQLGIKHFSSFPAHPQANGQVEDINKIIKHILKLRLEDIK

Q9TTC1 Gag-Pol polyprotein2.6e-0541.05Show/hide
Query:  FDISHAIISDNGKQFDNSKINGFCTQLGIKHFSSFPAHPQANGQVEDINKIIKHIL-KLRLEDIKGRWVEELPEVLWFYRTTMRNSTGKTQFALT
        F I   + SDNG  F      G  TQLGI         PQ++GQVE +N+ IK  L KL LE     WV  LP  L       RN+ G  QF LT
Subjt:  FDISHAIISDNGKQFDNSKINGFCTQLGIKHFSSFPAHPQANGQVEDINKIIKHIL-KLRLEDIKGRWVEELPEVLWFYRTTMRNSTGKTQFALT

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGTCGGAATGCTGCTGCTCGCGTTGGAATCACAGAACGGGTCACCGAAGCGTTGATTCACGTGCTGGTCGCGGGTTCGTGGGTCGTTGAGGGGTCGTGGGTAGGAGA
GAAGACTACAGCTGCACGTCGTTTGCTAGAAGGACGTCAAAATCGAACGAAAACGCTGCTGGTGTGTCGCAGACGTTCCGGATCTTGTAGGCAGCCGCAGTCGAATGGAA
GTCCGTGGTCACGCCGGAGCTACTCCACGATGCCACAGATCGGTGCGGGAGGGAGGGGCGACGCCGGAATACCGCTGAATCTCGTCGGAGGAAGGCGAATCTCGAGCTGC
AACCGCACCGTTGCTGCGCCGAAGCGCCGTCGGTCGTGGGTTGCCGCTGGTCGTCTAGCTTTTGCAGATCTGACCTTCGCGTGTTTGGGTCGCCGGCGAAGAATCAGTCA
CGCTGCCGTGGAGAATCGAACGTCGTCGCTCGTCGAAGGGGTGCCGTCGCCGGAAAGTGGCTGGAGGAGAAGATTCAGAAAGGAGGGGCGGCTAGGGTTCGACATATCCC
ATGCCATCATATCCGATAATGGGAAACAATTTGACAACTCCAAGATCAACGGCTTCTGCACACAGCTCGGGATAAAGCATTTTAGCTCGTTCCCAGCCCATCCGCAGGCC
AACGGCCAGGTAGAAGACATCAACAAGATCATCAAGCACATCTTGAAGCTAAGGCTAGAGGATATCAAAGGCCGTTGGGTCGAGGAATTACCCGAGGTGTTGTGGTTCTA
TAGAACAACCATGCGGAACTCCACTGGAAAGACCCAGTTCGCACTAACTGTTGGCTCAGAGGCCGTGGTGCCAGTTGAGATCGACCTACCAACAACTCAAACGGAGGCAT
TTGACATACCAACAAATGATGAGGAGCTTCACCTGAACCTCTACCTCTTTAAAGAGAGGAGGGAAACCTCACAGCTTGAACTCGCCGAGTACCAAAGGCGAATGAAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGCGTCGGAATGCTGCTGCTCGCGTTGGAATCACAGAACGGGTCACCGAAGCGTTGATTCACGTGCTGGTCGCGGGTTCGTGGGTCGTTGAGGGGTCGTGGGTAGGAGA
GAAGACTACAGCTGCACGTCGTTTGCTAGAAGGACGTCAAAATCGAACGAAAACGCTGCTGGTGTGTCGCAGACGTTCCGGATCTTGTAGGCAGCCGCAGTCGAATGGAA
GTCCGTGGTCACGCCGGAGCTACTCCACGATGCCACAGATCGGTGCGGGAGGGAGGGGCGACGCCGGAATACCGCTGAATCTCGTCGGAGGAAGGCGAATCTCGAGCTGC
AACCGCACCGTTGCTGCGCCGAAGCGCCGTCGGTCGTGGGTTGCCGCTGGTCGTCTAGCTTTTGCAGATCTGACCTTCGCGTGTTTGGGTCGCCGGCGAAGAATCAGTCA
CGCTGCCGTGGAGAATCGAACGTCGTCGCTCGTCGAAGGGGTGCCGTCGCCGGAAAGTGGCTGGAGGAGAAGATTCAGAAAGGAGGGGCGGCTAGGGTTCGACATATCCC
ATGCCATCATATCCGATAATGGGAAACAATTTGACAACTCCAAGATCAACGGCTTCTGCACACAGCTCGGGATAAAGCATTTTAGCTCGTTCCCAGCCCATCCGCAGGCC
AACGGCCAGGTAGAAGACATCAACAAGATCATCAAGCACATCTTGAAGCTAAGGCTAGAGGATATCAAAGGCCGTTGGGTCGAGGAATTACCCGAGGTGTTGTGGTTCTA
TAGAACAACCATGCGGAACTCCACTGGAAAGACCCAGTTCGCACTAACTGTTGGCTCAGAGGCCGTGGTGCCAGTTGAGATCGACCTACCAACAACTCAAACGGAGGCAT
TTGACATACCAACAAATGATGAGGAGCTTCACCTGAACCTCTACCTCTTTAAAGAGAGGAGGGAAACCTCACAGCTTGAACTCGCCGAGTACCAAAGGCGAATGAAGTAG
Protein sequenceShow/hide protein sequence
MRRNAAARVGITERVTEALIHVLVAGSWVVEGSWVGEKTTAARRLLEGRQNRTKTLLVCRRRSGSCRQPQSNGSPWSRRSYSTMPQIGAGGRGDAGIPLNLVGGRRISSC
NRTVAAPKRRRSWVAAGRLAFADLTFACLGRRRRISHAAVENRTSSLVEGVPSPESGWRRRFRKEGRLGFDISHAIISDNGKQFDNSKINGFCTQLGIKHFSSFPAHPQA
NGQVEDINKIIKHILKLRLEDIKGRWVEELPEVLWFYRTTMRNSTGKTQFALTVGSEAVVPVEIDLPTTQTEAFDIPTNDEELHLNLYLFKERRETSQLELAEYQRRMK