; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc04g21880 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc04g21880
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionReverse transcriptase
Genome locationchr4:15931655..15934114
RNA-Seq ExpressionMoc04g21880
SyntenyMoc04g21880
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040334.1 uncharacterized protein E6C27_scaffold460G00380 [Cucumis melo var. makuwa]5.1e-3546.77Show/hide
Query:  SEQLNKTHVKRLVEIEEQLLFLREVPDHVRFLENRLEELASKADGIDAANDQLDALPVKELLVRVETLE-------------------------------
        S   NK    RLVE+EEQ+L+L EVPD +R+LE+RL+E++ K + IDA   +++   ++EL+ RV +LE                               
Subjt:  SEQLNKTHVKRLVEIEEQLLFLREVPDHVRFLENRLEELASKADGIDAANDQLDALPVKELLVRVETLE-------------------------------

Query:  NSSQKVIMQMVSDLSDDFRAAIEVVRGRSCQDKHKEPKPFGGAHDAKAFENFIFDVEQYFRATNTTTEEAKITLATMHLAEDAKLW
        +SSQK +++M++ +S+DFRA ++VVR         EPKPF GA DAKA EN+IFD+EQYFRATNT TEEAK+TLATMH++EDAKLW
Subjt:  NSSQKVIMQMVSDLSDDFRAAIEVVRGRSCQDKHKEPKPFGGAHDAKAFENFIFDVEQYFRATNTTTEEAKITLATMHLAEDAKLW

TYK02461.1 uncharacterized protein E5676_scaffold1738G00820 [Cucumis melo var. makuwa]2.5e-3443.9Show/hide
Query:  KTHVKRLVEIEEQLLFLREVPDHVRFLENRLEELASKADGIDAANDQLDALPVKELLVRVETLE-----------------------------NSSQKVI
        KT   RLVE+EEQ+L+L EVPD + +LE+RL+E++ K D IDA    ++ LP++ELL RV+TLE                             +SSQK +
Subjt:  KTHVKRLVEIEEQLLFLREVPDHVRFLENRLEELASKADGIDAANDQLDALPVKELLVRVETLE-----------------------------NSSQKVI

Query:  MQMVSDLSDDFRAAIEVVRGR--------------------------SCQDKHKEPKPFGGAHDAKAFENFIFDVEQYFRATNTTTEEAKITLATMHLAE
        ++M++D+S+DFRA ++V+R                              + K  EPKPF G  DAKA ENFIFD+EQYF+ATNT TEEAK+TL TMHL E
Subjt:  MQMVSDLSDDFRAAIEVVRGR--------------------------SCQDKHKEPKPFGGAHDAKAFENFIFDVEQYFRATNTTTEEAKITLATMHLAE

Query:  DAKLW
        DAKLW
Subjt:  DAKLW

TYK03099.1 reverse transcriptase [Cucumis melo var. makuwa]2.0e-3442.92Show/hide
Query:  SEQLNKTHVKRLVEIEEQLLFLREVPDHVRFLENRLEELASKADGIDAANDQLDALPVKELLVRVETLE-------------------------------
        S  L K    RLVE+EEQ+L+L EVPD +R+LE+RLEE++ K + IDA   +++  P++EL+ RV+ LE                               
Subjt:  SEQLNKTHVKRLVEIEEQLLFLREVPDHVRFLENRLEELASKADGIDAANDQLDALPVKELLVRVETLE-------------------------------

Query:  NSSQKVIMQMVSDLSDDFRAAIEVVRGRSC--------------------------QDKHKEPKPFGGAHDAKAFENFIFDVEQYFRATNTTTEEAKITL
        +SSQK +++M++ +S+DFRA ++VVR                              + K  EPKPF GA DAKA EN+IFD+EQYFRATNT TEEAK+TL
Subjt:  NSSQKVIMQMVSDLSDDFRAAIEVVRGRSC--------------------------QDKHKEPKPFGGAHDAKAFENFIFDVEQYFRATNTTTEEAKITL

Query:  ATMHLAEDAKLW
        ATMHL+EDAKLW
Subjt:  ATMHLAEDAKLW

TYK21576.1 uncharacterized protein E5676_scaffold275G00750 [Cucumis melo var. makuwa]2.5e-3442.92Show/hide
Query:  SEQLNKTHVKRLVEIEEQLLFLREVPDHVRFLENRLEELASKADGIDAANDQLDALPVKELLVRVETLE-------------------------------
        S    K    RLVE+EEQ+L+L EVPD +R+LE+RL+E++ K D IDA   +++ALP++ELL RV+TLE                               
Subjt:  SEQLNKTHVKRLVEIEEQLLFLREVPDHVRFLENRLEELASKADGIDAANDQLDALPVKELLVRVETLE-------------------------------

Query:  NSSQKVIMQMVSDLSDDFRAAIEVVRGRSC--------------------------QDKHKEPKPFGGAHDAKAFENFIFDVEQYFRATNTTTEEAKITL
        +SSQK +++M++D+S+DFRA ++VVR                              + K  EPKPF G  DAKA ENF FD+EQYF+ATNT TEEAK+TL
Subjt:  NSSQKVIMQMVSDLSDDFRAAIEVVRGRSC--------------------------QDKHKEPKPFGGAHDAKAFENFIFDVEQYFRATNTTTEEAKITL

Query:  ATMHLAEDAKLW
        A M+L EDAKLW
Subjt:  ATMHLAEDAKLW

XP_022155185.1 uncharacterized protein LOC111022320 [Momordica charantia]1.4e-4050.54Show/hide
Query:  SEQLNKTHVKRLVEIEEQLLFLREVPDHVRFLENRLEELASKADGIDAANDQLDALPVKELLVRVETLENS-----------------------------
        ++QL K+H+ RLVEIEE+LLFLRE+PD++R++E+RL+E+++KADGID  N ++D L ++EL++RVETLE+                              
Subjt:  SEQLNKTHVKRLVEIEEQLLFLREVPDHVRFLENRLEELASKADGIDAANDQLDALPVKELLVRVETLENS-----------------------------

Query:  SQKVIMQMVSDLSDDFRAAIEVVRGRSCQDKHKEPKPFGGAHDAKAFENFIFDVEQYFRATNTTTEEAKITLATMHLAEDAKLW
        S+K I+QMVS+L+DDF+A ++ +R    +      KPF GA DAKA ENFIFD+EQYF+AT+T TEE+K+TLATMHLA+DAKLW
Subjt:  SQKVIMQMVSDLSDDFRAAIEVVRGRSCQDKHKEPKPFGGAHDAKAFENFIFDVEQYFRATNTTTEEAKITLATMHLAEDAKLW

TrEMBL top hitse value%identityAlignment
A0A5A7SV46 Retrotrans_gag domain-containing protein1.2e-3442.92Show/hide
Query:  SEQLNKTHVKRLVEIEEQLLFLREVPDHVRFLENRLEELASKADGIDAANDQLDALPVKELLVRVETLE-------------------------------
        S    K    RLVE+EEQ+L+L EVPD +R+LE+RL+E++ K D IDA   +++ALP++ELL RV+TLE                               
Subjt:  SEQLNKTHVKRLVEIEEQLLFLREVPDHVRFLENRLEELASKADGIDAANDQLDALPVKELLVRVETLE-------------------------------

Query:  NSSQKVIMQMVSDLSDDFRAAIEVVRGRSC--------------------------QDKHKEPKPFGGAHDAKAFENFIFDVEQYFRATNTTTEEAKITL
        +SSQK +++M++D+S+DFRA ++VVR                              + K  EPKPF G  DAKA ENF FD+EQYF+ATNT TEEAK+TL
Subjt:  NSSQKVIMQMVSDLSDDFRAAIEVVRGRSC--------------------------QDKHKEPKPFGGAHDAKAFENFIFDVEQYFRATNTTTEEAKITL

Query:  ATMHLAEDAKLW
        A M+L EDAKLW
Subjt:  ATMHLAEDAKLW

A0A5D3BYE6 Reverse transcriptase9.4e-3542.92Show/hide
Query:  SEQLNKTHVKRLVEIEEQLLFLREVPDHVRFLENRLEELASKADGIDAANDQLDALPVKELLVRVETLE-------------------------------
        S  L K    RLVE+EEQ+L+L EVPD +R+LE+RLEE++ K + IDA   +++  P++EL+ RV+ LE                               
Subjt:  SEQLNKTHVKRLVEIEEQLLFLREVPDHVRFLENRLEELASKADGIDAANDQLDALPVKELLVRVETLE-------------------------------

Query:  NSSQKVIMQMVSDLSDDFRAAIEVVRGRSC--------------------------QDKHKEPKPFGGAHDAKAFENFIFDVEQYFRATNTTTEEAKITL
        +SSQK +++M++ +S+DFRA ++VVR                              + K  EPKPF GA DAKA EN+IFD+EQYFRATNT TEEAK+TL
Subjt:  NSSQKVIMQMVSDLSDDFRAAIEVVRGRSC--------------------------QDKHKEPKPFGGAHDAKAFENFIFDVEQYFRATNTTTEEAKITL

Query:  ATMHLAEDAKLW
        ATMHL+EDAKLW
Subjt:  ATMHLAEDAKLW

A0A5D3DDD3 Retrotrans_gag domain-containing protein1.2e-3442.92Show/hide
Query:  SEQLNKTHVKRLVEIEEQLLFLREVPDHVRFLENRLEELASKADGIDAANDQLDALPVKELLVRVETLE-------------------------------
        S    K    RLVE+EEQ+L+L EVPD +R+LE+RL+E++ K D IDA   +++ALP++ELL RV+TLE                               
Subjt:  SEQLNKTHVKRLVEIEEQLLFLREVPDHVRFLENRLEELASKADGIDAANDQLDALPVKELLVRVETLE-------------------------------

Query:  NSSQKVIMQMVSDLSDDFRAAIEVVRGRSC--------------------------QDKHKEPKPFGGAHDAKAFENFIFDVEQYFRATNTTTEEAKITL
        +SSQK +++M++D+S+DFRA ++VVR                              + K  EPKPF G  DAKA ENF FD+EQYF+ATNT TEEAK+TL
Subjt:  NSSQKVIMQMVSDLSDDFRAAIEVVRGRSC--------------------------QDKHKEPKPFGGAHDAKAFENFIFDVEQYFRATNTTTEEAKITL

Query:  ATMHLAEDAKLW
        A M+L EDAKLW
Subjt:  ATMHLAEDAKLW

A0A5D3DJ18 Retrotrans_gag domain-containing protein2.5e-3546.77Show/hide
Query:  SEQLNKTHVKRLVEIEEQLLFLREVPDHVRFLENRLEELASKADGIDAANDQLDALPVKELLVRVETLE-------------------------------
        S   NK    RLVE+EEQ+L+L EVPD +R+LE+RL+E++ K + IDA   +++   ++EL+ RV +LE                               
Subjt:  SEQLNKTHVKRLVEIEEQLLFLREVPDHVRFLENRLEELASKADGIDAANDQLDALPVKELLVRVETLE-------------------------------

Query:  NSSQKVIMQMVSDLSDDFRAAIEVVRGRSCQDKHKEPKPFGGAHDAKAFENFIFDVEQYFRATNTTTEEAKITLATMHLAEDAKLW
        +SSQK +++M++ +S+DFRA ++VVR         EPKPF GA DAKA EN+IFD+EQYFRATNT TEEAK+TLATMH++EDAKLW
Subjt:  NSSQKVIMQMVSDLSDDFRAAIEVVRGRSCQDKHKEPKPFGGAHDAKAFENFIFDVEQYFRATNTTTEEAKITLATMHLAEDAKLW

A0A6J1DLQ6 uncharacterized protein LOC1110223206.8e-4150.54Show/hide
Query:  SEQLNKTHVKRLVEIEEQLLFLREVPDHVRFLENRLEELASKADGIDAANDQLDALPVKELLVRVETLENS-----------------------------
        ++QL K+H+ RLVEIEE+LLFLRE+PD++R++E+RL+E+++KADGID  N ++D L ++EL++RVETLE+                              
Subjt:  SEQLNKTHVKRLVEIEEQLLFLREVPDHVRFLENRLEELASKADGIDAANDQLDALPVKELLVRVETLENS-----------------------------

Query:  SQKVIMQMVSDLSDDFRAAIEVVRGRSCQDKHKEPKPFGGAHDAKAFENFIFDVEQYFRATNTTTEEAKITLATMHLAEDAKLW
        S+K I+QMVS+L+DDF+A ++ +R    +      KPF GA DAKA ENFIFD+EQYF+AT+T TEE+K+TLATMHLA+DAKLW
Subjt:  SQKVIMQMVSDLSDDFRAAIEVVRGRSCQDKHKEPKPFGGAHDAKAFENFIFDVEQYFRATNTTTEEAKITLATMHLAEDAKLW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGTGGATTAAGCTCTTCGGTTCCTCTCGAGGTTCGCACCAAGCTTGATTATCAGTCTTATATCCTGTATTTTCCTGCTTTAGTTTTGACCATGCTGAGCCGTTACTG
GCTTTTTGCCTCTTCGGCTTGCTTCCAGCCGTGGTGCCGTCGGCTATCTGATATTCGTTGGCTGACTTGTTCGTGGGCAAGAACAAGTGCCGCACAATCGCTTTGTGAGT
CCTTTGAAAAGTGCGATTGTGACAGTTGGTATCAGAGCCTAGTTGGCTCTCGGATCGAGACTAGTAATCATGTCGGCAGTGAACAGTTGAACAAGACACATGTCAAACGA
CTCGTGGAAATTGAGGAACAGCTGTTGTTCTTGAGAGAAGTCCCTGATCATGTTCGATTCCTAGAAAATCGGCTAGAAGAGTTGGCTAGTAAGGCCGATGGAATTGATGC
GGCAAACGATCAACTTGATGCTTTGCCAGTGAAAGAGTTGTTGGTTAGGGTTGAGACCCTAGAAAATAGCTCCCAGAAAGTGATCATGCAGATGGTCAGTGATCTTTCCG
ACGACTTTCGAGCTGCTATAGAAGTCGTGCGGGGCAGAAGTTGCCAAGATAAACACAAAGAGCCTAAGCCCTTCGGCGGGGCTCACGATGCCAAGGCCTTCGAGAACTTC
ATCTTCGACGTCGAACAATACTTTCGAGCTACAAATACCACGACAGAAGAAGCCAAGATCACTTTGGCAACCATGCATCTAGCTGAAGATGCAAAGCTTTGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGCGTGGATTAAGCTCTTCGGTTCCTCTCGAGGTTCGCACCAAGCTTGATTATCAGTCTTATATCCTGTATTTTCCTGCTTTAGTTTTGACCATGCTGAGCCGTTACTG
GCTTTTTGCCTCTTCGGCTTGCTTCCAGCCGTGGTGCCGTCGGCTATCTGATATTCGTTGGCTGACTTGTTCGTGGGCAAGAACAAGTGCCGCACAATCGCTTTGTGAGT
CCTTTGAAAAGTGCGATTGTGACAGTTGGTATCAGAGCCTAGTTGGCTCTCGGATCGAGACTAGTAATCATGTCGGCAGTGAACAGTTGAACAAGACACATGTCAAACGA
CTCGTGGAAATTGAGGAACAGCTGTTGTTCTTGAGAGAAGTCCCTGATCATGTTCGATTCCTAGAAAATCGGCTAGAAGAGTTGGCTAGTAAGGCCGATGGAATTGATGC
GGCAAACGATCAACTTGATGCTTTGCCAGTGAAAGAGTTGTTGGTTAGGGTTGAGACCCTAGAAAATAGCTCCCAGAAAGTGATCATGCAGATGGTCAGTGATCTTTCCG
ACGACTTTCGAGCTGCTATAGAAGTCGTGCGGGGCAGAAGTTGCCAAGATAAACACAAAGAGCCTAAGCCCTTCGGCGGGGCTCACGATGCCAAGGCCTTCGAGAACTTC
ATCTTCGACGTCGAACAATACTTTCGAGCTACAAATACCACGACAGAAGAAGCCAAGATCACTTTGGCAACCATGCATCTAGCTGAAGATGCAAAGCTTTGGTGA
Protein sequenceShow/hide protein sequence
MRGLSSSVPLEVRTKLDYQSYILYFPALVLTMLSRYWLFASSACFQPWCRRLSDIRWLTCSWARTSAAQSLCESFEKCDCDSWYQSLVGSRIETSNHVGSEQLNKTHVKR
LVEIEEQLLFLREVPDHVRFLENRLEELASKADGIDAANDQLDALPVKELLVRVETLENSSQKVIMQMVSDLSDDFRAAIEVVRGRSCQDKHKEPKPFGGAHDAKAFENF
IFDVEQYFRATNTTTEEAKITLATMHLAEDAKLW