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Moc04g22310 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc04g22310
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRNase H domain-containing protein
Genome locationchr4:16186686..16191408
RNA-Seq ExpressionMoc04g22310
SyntenyMoc04g22310
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PKI31543.1 hypothetical protein CRG98_048066, partial [Punica granatum]1.1e-1240.62Show/hide
Query:  IRRTVDSFIKSWKLVAPLSSKANRCWADISWKPLQINLWKLNIDGSAHGNLGRVGVRGLIRNSDGNWIKAFQQNLGYTTSIVAELWVILPGLKLAW
        I +T  SF + W LV  +    ++ W +ISW     + +KLN DGS+ GN G     GL+R++DG WI  F QN+G     +AELW +L G ++AW
Subjt:  IRRTVDSFIKSWKLVAPLSSKANRCWADISWKPLQINLWKLNIDGSAHGNLGRVGVRGLIRNSDGNWIKAFQQNLGYTTSIVAELWVILPGLKLAW

PKI42247.1 hypothetical protein CRG98_037363 [Punica granatum]3.9e-1343.12Show/hide
Query:  SFIKSWKLVAPLSSKANRCWADISW-KPLQINLWKLNIDGSAHGNLGRVGVRGLIRNSDGNWIKAFQQNLGYTTSIVAELWVILPGLKLAWSLSAECLLL
        SF + W L + +   + R W  I W KPL+ +  KLN DG   G+ G  G  G++RNS G WI  F Q+LG +T  VAELW +L GL+LAW  +A C  L
Subjt:  SFIKSWKLVAPLSSKANRCWADISW-KPLQINLWKLNIDGSAHGNLGRVGVRGLIRNSDGNWIKAFQQNLGYTTSIVAELWVILPGLKLAWSLSAECLLL

Query:  NLNQKSPVI
         +   S V+
Subjt:  NLNQKSPVI

PKI61873.1 hypothetical protein CRG98_017771 [Punica granatum]1.7e-1341.75Show/hide
Query:  DSVIIIRRTVDSFIKSWKLVAPLSSKANRCWADISWKPLQINLWKLNIDGSAHGNLGRVGVRGLIRNSDGNWIKAFQQNLGYTTSIVAELWVILPGLKLA
        +S+ +IR+ VDSF    ++   + S+  R W  I W     +  KLN DG++ GN G  G  GLIR+ +G W++ F QN+GY T+ +AELW I  GL+L 
Subjt:  DSVIIIRRTVDSFIKSWKLVAPLSSKANRCWADISWKPLQINLWKLNIDGSAHGNLGRVGVRGLIRNSDGNWIKAFQQNLGYTTSIVAELWVILPGLKLA

Query:  WSL
        W+L
Subjt:  WSL

XP_023893189.1 uncharacterized protein LOC112005172 [Quercus suber]3.3e-1242.42Show/hide
Query:  VAPLSSKANRCWADISWKPLQINLWKLNIDGSAHGNLGRVGVRGLIRNSDGNWIKAFQQNLGYTTSIVAELWVILPGLKLAWSLSAECLLLNLNQKSPV
        V+      +R    I W     N +KLN DG++ GN GR G  GLIRNSDG WI+ + +++GYTTS++ ELW +  GL LA  L    L + L+ K+ V
Subjt:  VAPLSSKANRCWADISWKPLQINLWKLNIDGSAHGNLGRVGVRGLIRNSDGNWIKAFQQNLGYTTSIVAELWVILPGLKLAWSLSAECLLLNLNQKSPV

XP_031402735.1 uncharacterized protein LOC116212324 [Punica granatum]1.1e-1227.14Show/hide
Query:  VVDVVERLGVVHHEADLDADDHLHVAREGSPHSGEDFLWGSFHMNSSSRAPMVVISRGRHFSQIGPRYCPNCELEASEEGEV-----PLCQVWKELLILV
        V D V+  G  +     D  DH  + +   P     FLW + H    +    V   R    S +    C +C +       V       C VWK+   L+
Subjt:  VVDVVERLGVVHHEADLDADDHLHVAREGSPHSGEDFLWGSFHMNSSSRAPMVVISRGRHFSQIGPRYCPNCELEASEEGEV-----PLCQVWKELLILV

Query:  LVTCWILVPRQVKWSRLPHNKLTIDNWT----TSKGVIFKSV-----TLMSLTHTCNHRGTTSCEAVDSVIIIRRTVDSFIKSWKLVAPLSSKANRCWAD
        L + W        +S +P N   + N +      KG+ +  V      LM      +    T     D+ + I R  +SF   W+    +  +  R W  
Subjt:  LVTCWILVPRQVKWSRLPHNKLTIDNWT----TSKGVIFKSV-----TLMSLTHTCNHRGTTSCEAVDSVIIIRRTVDSFIKSWKLVAPLSSKANRCWAD

Query:  ISWKPLQINLWKLNIDGSAHGNLGRVGVRGLIRNSDGNWIKAFQQNLGYTTSIVAELWVILPGLKLAWSLSAECLLLNLN
        + W        KLN DG++ GN G  G  G++R  DG W  +F +N+G  T++VAELW +L GL+LAW L    +LL ++
Subjt:  ISWKPLQINLWKLNIDGSAHGNLGRVGVRGLIRNSDGNWIKAFQQNLGYTTSIVAELWVILPGLKLAWSLSAECLLLNLN

TrEMBL top hitse value%identityAlignment
A0A2I0HIV6 Uncharacterized protein (Fragment)5.5e-1340.62Show/hide
Query:  IRRTVDSFIKSWKLVAPLSSKANRCWADISWKPLQINLWKLNIDGSAHGNLGRVGVRGLIRNSDGNWIKAFQQNLGYTTSIVAELWVILPGLKLAW
        I +T  SF + W LV  +    ++ W +ISW     + +KLN DGS+ GN G     GL+R++DG WI  F QN+G     +AELW +L G ++AW
Subjt:  IRRTVDSFIKSWKLVAPLSSKANRCWADISWKPLQINLWKLNIDGSAHGNLGRVGVRGLIRNSDGNWIKAFQQNLGYTTSIVAELWVILPGLKLAW

A0A2I0IE25 RNase H domain-containing protein1.9e-1343.12Show/hide
Query:  SFIKSWKLVAPLSSKANRCWADISW-KPLQINLWKLNIDGSAHGNLGRVGVRGLIRNSDGNWIKAFQQNLGYTTSIVAELWVILPGLKLAWSLSAECLLL
        SF + W L + +   + R W  I W KPL+ +  KLN DG   G+ G  G  G++RNS G WI  F Q+LG +T  VAELW +L GL+LAW  +A C  L
Subjt:  SFIKSWKLVAPLSSKANRCWADISW-KPLQINLWKLNIDGSAHGNLGRVGVRGLIRNSDGNWIKAFQQNLGYTTSIVAELWVILPGLKLAWSLSAECLLL

Query:  NLNQKSPVI
         +   S V+
Subjt:  NLNQKSPVI

A0A2I0IZF3 RNase H domain-containing protein3.6e-1246.84Show/hide
Query:  KPLQINLWKLNIDGSAHGNLGRVGVRGLIRNSDGNWIKAFQQNLGYTTSIVAELWVILPGLKLAWSLSAECLLLNLNQK
        K L  +   LN DG+A GN G+ G RGLIR+  G W+  F QN+G TTS++AELW +  GL+LAW L    L+L ++ +
Subjt:  KPLQINLWKLNIDGSAHGNLGRVGVRGLIRNSDGNWIKAFQQNLGYTTSIVAELWVILPGLKLAWSLSAECLLLNLNQK

A0A2I0K1C2 RNase H domain-containing protein8.5e-1441.75Show/hide
Query:  DSVIIIRRTVDSFIKSWKLVAPLSSKANRCWADISWKPLQINLWKLNIDGSAHGNLGRVGVRGLIRNSDGNWIKAFQQNLGYTTSIVAELWVILPGLKLA
        +S+ +IR+ VDSF    ++   + S+  R W  I W     +  KLN DG++ GN G  G  GLIR+ +G W++ F QN+GY T+ +AELW I  GL+L 
Subjt:  DSVIIIRRTVDSFIKSWKLVAPLSSKANRCWADISWKPLQINLWKLNIDGSAHGNLGRVGVRGLIRNSDGNWIKAFQQNLGYTTSIVAELWVILPGLKLA

Query:  WSL
        W+L
Subjt:  WSL

A0A6P8E5K3 uncharacterized protein LOC1162123245.5e-1327.14Show/hide
Query:  VVDVVERLGVVHHEADLDADDHLHVAREGSPHSGEDFLWGSFHMNSSSRAPMVVISRGRHFSQIGPRYCPNCELEASEEGEV-----PLCQVWKELLILV
        V D V+  G  +     D  DH  + +   P     FLW + H    +    V   R    S +    C +C +       V       C VWK+   L+
Subjt:  VVDVVERLGVVHHEADLDADDHLHVAREGSPHSGEDFLWGSFHMNSSSRAPMVVISRGRHFSQIGPRYCPNCELEASEEGEV-----PLCQVWKELLILV

Query:  LVTCWILVPRQVKWSRLPHNKLTIDNWT----TSKGVIFKSV-----TLMSLTHTCNHRGTTSCEAVDSVIIIRRTVDSFIKSWKLVAPLSSKANRCWAD
        L + W        +S +P N   + N +      KG+ +  V      LM      +    T     D+ + I R  +SF   W+    +  +  R W  
Subjt:  LVTCWILVPRQVKWSRLPHNKLTIDNWT----TSKGVIFKSV-----TLMSLTHTCNHRGTTSCEAVDSVIIIRRTVDSFIKSWKLVAPLSSKANRCWAD

Query:  ISWKPLQINLWKLNIDGSAHGNLGRVGVRGLIRNSDGNWIKAFQQNLGYTTSIVAELWVILPGLKLAWSLSAECLLLNLN
        + W        KLN DG++ GN G  G  G++R  DG W  +F +N+G  T++VAELW +L GL+LAW L    +LL ++
Subjt:  ISWKPLQINLWKLNIDGSAHGNLGRVGVRGLIRNSDGNWIKAFQQNLGYTTSIVAELWVILPGLKLAWSLSAECLLLNLN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGACCATCAAGTATAGCTTATGAAAATGAGGTTTCTCTTGCTCGACTATTCAGAGTGGATCTAAAGGCTGATTTTTGTTGCCTGCTGCTGTTACTTGTCGTC
GATGTCGTCGAACGTTTGGGCGTTGTTCATCACGAGGCCGATCTAGATGCTGACGATCACCTTCATGTGGCTCGGGAAGGATCTCCACACTCGGGTGAAGATTTC
TTGTGGGGGAGTTTTCATATGAACTCCTCTAGTCGCGCGCCGATGGTGGTCATCTCTCGAGGTCGACACTTCTCCCAGATCGGGCCTCGATACTGCCCCAATTGC
GAACTAGAGGCATCGGAGGAGGGAGAGGTTCCTCTATGCCAAGTGTGGAAGGAACTGCTAATCCTTGTTCTTGTCACTTGCTGGATTCTGGTCCCGAGGCAGGTC
AAGTGGAGTAGGTTGCCCCATAACAAGCTGACCATTGACAATTGGACCACAAGCAAGGGAGTGATCTTCAAGTCGGTCACCCTCATGTCGTTGACCCATACTTGC
AACCACAGAGGTACCACCAGTTGTGAGGCAGTGGACTCAGTCATAATAATTCGAAGAACTGTGGATAGCTTTATCAAGTCTTGGAAGTTGGTAGCACCTCTCTCA
AGCAAAGCAAATCGATGCTGGGCCGATATTAGTTGGAAGCCACTACAAATTAATTTATGGAAGCTTAACATAGATGGGTCAGCGCATGGCAACCTGGGAAGGGTA
GGAGTTAGAGGCTTAATTAGGAATTCTGATGGAAATTGGATAAAGGCCTTTCAGCAAAACCTGGGCTACACGACGTCAATTGTAGCAGAATTATGGGTTATCCTA
CCTGGTCTAAAATTGGCTTGGAGCCTGAGTGCAGAATGCTTGTTATTGAATCTGAATCAGAAGTCGCCTGTAATTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGACCATCAAGTATAGCTTATGAAAATGAGGTTTCTCTTGCTCGACTATTCAGAGTGGATCTAAAGGCTGATTTTTGTTGCCTGCTGCTGTTACTTGTCGTC
GATGTCGTCGAACGTTTGGGCGTTGTTCATCACGAGGCCGATCTAGATGCTGACGATCACCTTCATGTGGCTCGGGAAGGATCTCCACACTCGGGTGAAGATTTC
TTGTGGGGGAGTTTTCATATGAACTCCTCTAGTCGCGCGCCGATGGTGGTCATCTCTCGAGGTCGACACTTCTCCCAGATCGGGCCTCGATACTGCCCCAATTGC
GAACTAGAGGCATCGGAGGAGGGAGAGGTTCCTCTATGCCAAGTGTGGAAGGAACTGCTAATCCTTGTTCTTGTCACTTGCTGGATTCTGGTCCCGAGGCAGGTC
AAGTGGAGTAGGTTGCCCCATAACAAGCTGACCATTGACAATTGGACCACAAGCAAGGGAGTGATCTTCAAGTCGGTCACCCTCATGTCGTTGACCCATACTTGC
AACCACAGAGGTACCACCAGTTGTGAGGCAGTGGACTCAGTCATAATAATTCGAAGAACTGTGGATAGCTTTATCAAGTCTTGGAAGTTGGTAGCACCTCTCTCA
AGCAAAGCAAATCGATGCTGGGCCGATATTAGTTGGAAGCCACTACAAATTAATTTATGGAAGCTTAACATAGATGGGTCAGCGCATGGCAACCTGGGAAGGGTA
GGAGTTAGAGGCTTAATTAGGAATTCTGATGGAAATTGGATAAAGGCCTTTCAGCAAAACCTGGGCTACACGACGTCAATTGTAGCAGAATTATGGGTTATCCTA
CCTGGTCTAAAATTGGCTTGGAGCCTGAGTGCAGAATGCTTGTTATTGAATCTGAATCAGAAGTCGCCTGTAATTTAG
Protein sequenceShow/hide protein sequence
MGPSSIAYENEVSLARLFRVDLKADFCCLLLLLVVDVVERLGVVHHEADLDADDHLHVAREGSPHSGEDFLWGSFHMNSSSRAPMVVISRGRHFSQIGPRYCPNC
ELEASEEGEVPLCQVWKELLILVLVTCWILVPRQVKWSRLPHNKLTIDNWTTSKGVIFKSVTLMSLTHTCNHRGTTSCEAVDSVIIIRRTVDSFIKSWKLVAPLS
SKANRCWADISWKPLQINLWKLNIDGSAHGNLGRVGVRGLIRNSDGNWIKAFQQNLGYTTSIVAELWVILPGLKLAWSLSAECLLLNLNQKSPVI