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Moc04g22580 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc04g22580
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr4:16408288..16410284
RNA-Seq ExpressionMoc04g22580
SyntenyMoc04g22580
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TXG57779.1 hypothetical protein EZV62_015608 [Acer yangbiense]2.8e-0934.75Show/hide
Query:  PAHPSSSSQFELRLHEAEKLKKPK-----------YLFARIIDCKIAKEAWDKLQEEFEGSARIRLAGEDFPDQRVVEKIM-------------------
        PA  ++ +  +++ +E EK+KK K            +F  I+  + +KE WD+L+E +EGS R+RL GE   D +VVEK++                   
Subjt:  PAHPSSSSQFELRLHEAEKLKKPK-----------YLFARIIDCKIAKEAWDKLQEEFEGSARIRLAGEDFPDQRVVEKIM-------------------

Query:  --------LISKLQAQEQRDKMRNEKDVEAAFNAKFKGKKP
                ++SKLQAQEQR  MRN    E AF A+ KGK+P
Subjt:  --------LISKLQAQEQRDKMRNEKDVEAAFNAKFKGKKP

XP_015167177.1 PREDICTED: uncharacterized protein LOC107061811 [Solanum tuberosum]1.8e-0832.74Show/hide
Query:  ELRLHEAEKLKKPKYL-----------FARIIDCKIAKEAWDKLQEEFEGSAR-------------------------------------IRLAGEDFPD
        +++++E  K +KPK L           F RI+ C+  KE W+KL+EEF+GS R                                     +RL GE FPD
Subjt:  ELRLHEAEKLKKPKYL-----------FARIIDCKIAKEAWDKLQEEFEGSAR-------------------------------------IRLAGEDFPD

Query:  QRVVEKIM---------------------------LISKLQAQEQRDKMRNEKDVEAAFNAKFKGKKP
         RVVEK+M                           LISKLQAQEQ   +R+E+  EAAF A+ KGK+P
Subjt:  QRVVEKIM---------------------------LISKLQAQEQRDKMRNEKDVEAAFNAKFKGKKP

XP_015169132.1 PREDICTED: uncharacterized protein LOC107062702 [Solanum tuberosum]4.0e-0831.55Show/hide
Query:  ELRLHEAEKLKKPKYL-----------FARIIDCKIAKEAWDKLQEEFEGSARIRLA-------------------------------------GEDFPD
        +++++E  K +KPK L           F +I+ C+  KE W+KL+EEF+GS R++                                       GE FPD
Subjt:  ELRLHEAEKLKKPKYL-----------FARIIDCKIAKEAWDKLQEEFEGSARIRLA-------------------------------------GEDFPD

Query:  QRVVEKIM---------------------------LISKLQAQEQRDKMRNEKDVEAAFNAKFKGKKP
         RVVEK+M                           LISKLQAQEQR  +R+E+  EAAF A+ KGK+P
Subjt:  QRVVEKIM---------------------------LISKLQAQEQRDKMRNEKDVEAAFNAKFKGKKP

XP_021678896.1 uncharacterized protein LOC110663790 [Hevea brasiliensis]1.0e-0833.33Show/hide
Query:  PSSSSQFELRLHEAEKLKKPKYL-----------FARIIDCKIAKEAWDKLQEEFEGSARIRLAGEDFPDQRVVEKIML---------------------
        P + S  ++++H  E++KK K L           F RII C+ AK+AWDKL+EE++G+ R RL G++  D+R+++K+++                     
Subjt:  PSSSSQFELRLHEAEKLKKPKYL-----------FARIIDCKIAKEAWDKLQEEFEGSARIRLAGEDFPDQRVVEKIML---------------------

Query:  -----ISKLQAQEQRDKMRNEKDVEAAFNAKFKGK
             I+  QA+EQR  +R E   E AF AK K K
Subjt:  -----ISKLQAQEQRDKMRNEKDVEAAFNAKFKGK

XP_034928651.1 uncharacterized protein LOC118059786 [Populus alba]3.1e-0832.34Show/hide
Query:  ELRLHEAEKLKKPK-----------YLFARIIDCKIAKEAWDKLQEEFEGSARI-------------------------------------RLAGEDFPD
        ++R HE EKLKK K           ++F +I++ +  K+ WDKLQ EFEG+ R+                                     RL GE F D
Subjt:  ELRLHEAEKLKKPK-----------YLFARIIDCKIAKEAWDKLQEEFEGSARI-------------------------------------RLAGEDFPD

Query:  QRVVEKIM---------------------------LISKLQAQEQRDKMRNEKDVEAAFNAKFKGKK
         ++VEK+M                           LISKLQ QEQR +MR+++ VE AF A FKGKK
Subjt:  QRVVEKIM---------------------------LISKLQAQEQRDKMRNEKDVEAAFNAKFKGKK

TrEMBL top hitse value%identityAlignment
A0A2G2YUL7 C3H1-type domain-containing protein7.3e-0837.7Show/hide
Query:  ELRLHEAEKLKKPKYL-----------FARIIDCKIAKEAWDKLQEEFEGSARIRL------------------AGEDFPDQRVVEKIMLISKLQAQEQR
        +++ +E  K KKPK L           F RI+ C+  KE W+KL EEF+GS R++                   A E+  D + +    LISKLQAQEQR
Subjt:  ELRLHEAEKLKKPKYL-----------FARIIDCKIAKEAWDKLQEEFEGSARIRL------------------AGEDFPDQRVVEKIMLISKLQAQEQR

Query:  DKMRNEKDVEAAFNAKFKGKKP
          +R+E+  E AF AK K K+P
Subjt:  DKMRNEKDVEAAFNAKFKGKKP

A0A438HRY4 Retrovirus-related Pol polyprotein from transposon TNT 1-942.8e-0730.77Show/hide
Query:  MFEVTRPAHPSSSSQFELRLHEAEKLKKPK-----------YLFARIIDCKIAKEAWDKLQEEFEGSARI------------------------------
        M EV  P   ++ +  +++ +E EKLKK K           ++F +I++ +  K+ WDKLQ EFEGS R+                              
Subjt:  MFEVTRPAHPSSSSQFELRLHEAEKLKKPK-----------YLFARIIDCKIAKEAWDKLQEEFEGSARI------------------------------

Query:  -------RLAGEDFPDQRVVEKIM---------------------------LISKLQAQEQRDKMRNEKDVEAAFNAKFKGK
               RL GE F DQ+VVEKIM                           L SKL AQEQR  MR ++  E AF A  KGK
Subjt:  -------RLAGEDFPDQRVVEKIM---------------------------LISKLQAQEQRDKMRNEKDVEAAFNAKFKGK

A0A5C7HLW5 DUF4219 domain-containing protein1.3e-0934.75Show/hide
Query:  PAHPSSSSQFELRLHEAEKLKKPK-----------YLFARIIDCKIAKEAWDKLQEEFEGSARIRLAGEDFPDQRVVEKIM-------------------
        PA  ++ +  +++ +E EK+KK K            +F  I+  + +KE WD+L+E +EGS R+RL GE   D +VVEK++                   
Subjt:  PAHPSSSSQFELRLHEAEKLKKPK-----------YLFARIIDCKIAKEAWDKLQEEFEGSARIRLAGEDFPDQRVVEKIM-------------------

Query:  --------LISKLQAQEQRDKMRNEKDVEAAFNAKFKGKKP
                ++SKLQAQEQR  MRN    E AF A+ KGK+P
Subjt:  --------LISKLQAQEQRDKMRNEKDVEAAFNAKFKGKKP

A0A6J1DVL9 uncharacterized protein LOC1110235106.2e-0747.87Show/hide
Query:  LHEAEKLKKPKYL-----------FARIIDCKIAKEAWDKLQEEFEGSA-------------------------RIRLAGEDFPDQRVVEKIML
        LHE +KL KPK L           FA+IIDCK AKEA DKLQEEFEGS                          +IRL GE+F DQRVVEKIM+
Subjt:  LHEAEKLKKPKYL-----------FARIIDCKIAKEAWDKLQEEFEGSA-------------------------RIRLAGEDFPDQRVVEKIML

Q2QLK1 Retrotransposon protein, putative, unclassified1.6e-0740.4Show/hide
Query:  LFARIIDCKIAKEAWDKLQEEFEGSARIRLAGEDFPDQRVVEKIM---------------------------LISKLQAQEQRDKMRNEKDVEAAFNAK
        LF RII  K +KEAWDKL+EEF+GS ++RL GED  DQ+VVEKI+                           L+S L++ E+R   R    +E AF +K
Subjt:  LFARIIDCKIAKEAWDKLQEEFEGSARIRLAGEDFPDQRVVEKIM---------------------------LISKLQAQEQRDKMRNEKDVEAAFNAK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTGAGGTCACCCGTCCAGCTCATCCTTCGAGCAGTTCTCAATTTGAGCTAAGATTACATGAAGCGGAGAAGTTAAAGAAGCCTAAGTATTTATTTGCTAGA
ATTATTGATTGTAAAATAGCAAAAGAAGCTTGGGATAAATTACAAGAGGAATTTGAAGGAAGTGCAAGGATCAGACTAGCTGGTGAAGATTTTCCAGATCAAAGA
GTTGTGGAGAAAATAATGTTAATTAGCAAGTTACAAGCCCAGGAACAGAGGGATAAAATGCGTAACGAGAAGGATGTTGAAGCTGCCTTTAATGCCAAGTTCAAA
GGCAAGAAACCTGCTGCATAA
mRNA sequenceShow/hide mRNA sequence
ATGTTTGAGGTCACCCGTCCAGCTCATCCTTCGAGCAGTTCTCAATTTGAGCTAAGATTACATGAAGCGGAGAAGTTAAAGAAGCCTAAGTATTTATTTGCTAGA
ATTATTGATTGTAAAATAGCAAAAGAAGCTTGGGATAAATTACAAGAGGAATTTGAAGGAAGTGCAAGGATCAGACTAGCTGGTGAAGATTTTCCAGATCAAAGA
GTTGTGGAGAAAATAATGTTAATTAGCAAGTTACAAGCCCAGGAACAGAGGGATAAAATGCGTAACGAGAAGGATGTTGAAGCTGCCTTTAATGCCAAGTTCAAA
GGCAAGAAACCTGCTGCATAA
Protein sequenceShow/hide protein sequence
MFEVTRPAHPSSSSQFELRLHEAEKLKKPKYLFARIIDCKIAKEAWDKLQEEFEGSARIRLAGEDFPDQRVVEKIMLISKLQAQEQRDKMRNEKDVEAAFNAKFK
GKKPAA