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Moc04g23110 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc04g23110
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr4:16737119..16739775
RNA-Seq ExpressionMoc04g23110
SyntenyMoc04g23110
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0057642.1 reverse transcriptase [Cucumis melo var. makuwa]4.6e-4049.69Show/hide
Query:  GLFSVSSAWGVLQPARPSVPWFPLVWFGGNIPKHSFINWLAVCDQLATRDRLCRWDSSVPPTFYAFCAGMESQDHLFFECSFSWEVWSDMIAWVGSSHRF
        G FS++SAW  ++P    V W  L+W GGNIPKHSF  WLA+ D+L TRDR  RWDSSVP +      GMES+DHLFF C F  +VWS ++  + SSHR 
Subjt:  GLFSVSSAWGVLQPARPSVPWFPLVWFGGNIPKHSFINWLAVCDQLATRDRLCRWDSSVPPTFYAFCAGMESQDHLFFECSFSWEVWSDMIAWVGSSHRF

Query:  SYWSIELAWICHISAKKFACRRMWRLAWISTVSFIWRERNARVHAGGMVRSPSVLLQAL
         +W +EL+WICH   +K   R++WR+ W +T+ FIW ERN R+H GG    P V+   +
Subjt:  SYWSIELAWICHISAKKFACRRMWRLAWISTVSFIWRERNARVHAGGMVRSPSVLLQAL

TYK19523.1 reverse transcriptase [Cucumis melo var. makuwa]4.6e-4049.69Show/hide
Query:  GLFSVSSAWGVLQPARPSVPWFPLVWFGGNIPKHSFINWLAVCDQLATRDRLCRWDSSVPPTFYAFCAGMESQDHLFFECSFSWEVWSDMIAWVGSSHRF
        G FS++SAW  ++P    V W  L+W GGNIPKHSF  WLA+ D+L TRDR  RWDSSVP +      GMES+DHLFF C F  +VWS ++  + SSHR 
Subjt:  GLFSVSSAWGVLQPARPSVPWFPLVWFGGNIPKHSFINWLAVCDQLATRDRLCRWDSSVPPTFYAFCAGMESQDHLFFECSFSWEVWSDMIAWVGSSHRF

Query:  SYWSIELAWICHISAKKFACRRMWRLAWISTVSFIWRERNARVHAGGMVRSPSVLLQAL
         +W +EL+WICH   +K   R++WR+ W +T+ FIW ERN R+H GG    P V+   +
Subjt:  SYWSIELAWICHISAKKFACRRMWRLAWISTVSFIWRERNARVHAGGMVRSPSVLLQAL

XP_008452126.1 PREDICTED: uncharacterized protein LOC103493225 [Cucumis melo]4.6e-4049.69Show/hide
Query:  GLFSVSSAWGVLQPARPSVPWFPLVWFGGNIPKHSFINWLAVCDQLATRDRLCRWDSSVPPTFYAFCAGMESQDHLFFECSFSWEVWSDMIAWVGSSHRF
        G FS++SAW  ++P    V W  L+W GGNIPKHSF  WLA+ D+L TRDR  RWDSSVP +      GMES+DHLFF C F  +VWS ++  + SSHR 
Subjt:  GLFSVSSAWGVLQPARPSVPWFPLVWFGGNIPKHSFINWLAVCDQLATRDRLCRWDSSVPPTFYAFCAGMESQDHLFFECSFSWEVWSDMIAWVGSSHRF

Query:  SYWSIELAWICHISAKKFACRRMWRLAWISTVSFIWRERNARVHAGGMVRSPSVLLQAL
         +W +EL+WICH   +K   R++WR+ W +T+ FIW ERN R+H GG    P V+   +
Subjt:  SYWSIELAWICHISAKKFACRRMWRLAWISTVSFIWRERNARVHAGGMVRSPSVLLQAL

XP_022158861.1 uncharacterized protein LOC111025324 [Momordica charantia]2.0e-5159.51Show/hide
Query:  GLFSVSSAWGVLQPARPSVPWFPLVWFGGNIPKHSFINWLAVCDQLATRDRLCRWDSSVPPTFYAFCAGMESQDHLFFECSFSWEVWSDMIAWVGSSHRF
        GLFSVSS WG+L+P RP V +F L+WFGGNIPKHSFI+WLA+ D+L TR+RL +W++ VP T   FCAG+ES+DHLF +C +S  VW+ MI+W GSSHR 
Subjt:  GLFSVSSAWGVLQPARPSVPWFPLVWFGGNIPKHSFINWLAVCDQLATRDRLCRWDSSVPPTFYAFCAGMESQDHLFFECSFSWEVWSDMIAWVGSSHRF

Query:  SYWSIELAWICHISAKKFACRRMWRLAWISTVSFIWRERNARVHAGGMVRSPSVLLQALNAEL
        SYWS EL WICH++    + R +WRLAW  TVS +WRE N R+H  G  RS SVLL+ + AE+
Subjt:  SYWSIELAWICHISAKKFACRRMWRLAWISTVSFIWRERNARVHAGGMVRSPSVLLQALNAEL

XP_031745548.1 uncharacterized protein LOC116405965 [Cucumis sativus]1.1e-4142.73Show/hide
Query:  GARAAGNQGLRWLGLRCVFLCGRD-DFR-PLVRFSIGDGQHKCGMTLRFRGSDLSEVCWSLRFHLLGLFSVSSAWGVLQPARPSVPWFPLVWFGGNIPKH
        G R   + G RW   R V   GRD D+R PLV   + D   +       R S   E  W         FS++SAW  ++P    V W  L+W GGNIPKH
Subjt:  GARAAGNQGLRWLGLRCVFLCGRD-DFR-PLVRFSIGDGQHKCGMTLRFRGSDLSEVCWSLRFHLLGLFSVSSAWGVLQPARPSVPWFPLVWFGGNIPKH

Query:  SFINWLAVCDQLATRDRLCRWDSSVPPTFYAFCAGMESQDHLFFECSFSWEVWSDMIAWVGSSHRFSYWSIELAWICHISAKKFACRRMWRLAWISTVSF
        SF  WLA+ D+L TRDRL RWD S+P +        ES+DHLFF C F WE+WS ++  + SSHR  YW + L+WI +    K   R++WRL W +T+ F
Subjt:  SFINWLAVCDQLATRDRLCRWDSSVPPTFYAFCAGMESQDHLFFECSFSWEVWSDMIAWVGSSHRFSYWSIELAWICHISAKKFACRRMWRLAWISTVSF

Query:  IWRERNARVHAGGMVRSPSVLLQALNA
        IW+ERN R+H GG +R P V+ Q + +
Subjt:  IWRERNARVHAGGMVRSPSVLLQALNA

TrEMBL top hitse value%identityAlignment
A0A1S3BSI8 uncharacterized protein LOC1034932252.2e-4049.69Show/hide
Query:  GLFSVSSAWGVLQPARPSVPWFPLVWFGGNIPKHSFINWLAVCDQLATRDRLCRWDSSVPPTFYAFCAGMESQDHLFFECSFSWEVWSDMIAWVGSSHRF
        G FS++SAW  ++P    V W  L+W GGNIPKHSF  WLA+ D+L TRDR  RWDSSVP +      GMES+DHLFF C F  +VWS ++  + SSHR 
Subjt:  GLFSVSSAWGVLQPARPSVPWFPLVWFGGNIPKHSFINWLAVCDQLATRDRLCRWDSSVPPTFYAFCAGMESQDHLFFECSFSWEVWSDMIAWVGSSHRF

Query:  SYWSIELAWICHISAKKFACRRMWRLAWISTVSFIWRERNARVHAGGMVRSPSVLLQAL
         +W +EL+WICH   +K   R++WR+ W +T+ FIW ERN R+H GG    P V+   +
Subjt:  SYWSIELAWICHISAKKFACRRMWRLAWISTVSFIWRERNARVHAGGMVRSPSVLLQAL

A0A5A7UP65 Reverse transcriptase2.2e-4049.69Show/hide
Query:  GLFSVSSAWGVLQPARPSVPWFPLVWFGGNIPKHSFINWLAVCDQLATRDRLCRWDSSVPPTFYAFCAGMESQDHLFFECSFSWEVWSDMIAWVGSSHRF
        G FS++SAW  ++P    V W  L+W GGNIPKHSF  WLA+ D+L TRDR  RWDSSVP +      GMES+DHLFF C F  +VWS ++  + SSHR 
Subjt:  GLFSVSSAWGVLQPARPSVPWFPLVWFGGNIPKHSFINWLAVCDQLATRDRLCRWDSSVPPTFYAFCAGMESQDHLFFECSFSWEVWSDMIAWVGSSHRF

Query:  SYWSIELAWICHISAKKFACRRMWRLAWISTVSFIWRERNARVHAGGMVRSPSVLLQAL
         +W +EL+WICH   +K   R++WR+ W +T+ FIW ERN R+H GG    P V+   +
Subjt:  SYWSIELAWICHISAKKFACRRMWRLAWISTVSFIWRERNARVHAGGMVRSPSVLLQAL

A0A5D3D7P6 Reverse transcriptase2.2e-4049.69Show/hide
Query:  GLFSVSSAWGVLQPARPSVPWFPLVWFGGNIPKHSFINWLAVCDQLATRDRLCRWDSSVPPTFYAFCAGMESQDHLFFECSFSWEVWSDMIAWVGSSHRF
        G FS++SAW  ++P    V W  L+W GGNIPKHSF  WLA+ D+L TRDR  RWDSSVP +      GMES+DHLFF C F  +VWS ++  + SSHR 
Subjt:  GLFSVSSAWGVLQPARPSVPWFPLVWFGGNIPKHSFINWLAVCDQLATRDRLCRWDSSVPPTFYAFCAGMESQDHLFFECSFSWEVWSDMIAWVGSSHRF

Query:  SYWSIELAWICHISAKKFACRRMWRLAWISTVSFIWRERNARVHAGGMVRSPSVLLQAL
         +W +EL+WICH   +K   R++WR+ W +T+ FIW ERN R+H GG    P V+   +
Subjt:  SYWSIELAWICHISAKKFACRRMWRLAWISTVSFIWRERNARVHAGGMVRSPSVLLQAL

A0A6J1DTG0 uncharacterized protein LOC1110241651.1e-3968.91Show/hide
Query:  SEVCWSLRFHLLGLFSVSSAWGVLQPARPSVPWFPLVWFGGNIPKHSFINWLAVCDQLATRDRLCRWDSSVPPTFYAFCAGMESQDHLFFECSFSWEVWS
        ++V WS      GLFSVS+A  VL+P RP VPWF LVWFGGNIPKHSFI WLA+ D+LATRDRLCRWD SV  +   FC G ES D+LFFEC FSWEVWS
Subjt:  SEVCWSLRFHLLGLFSVSSAWGVLQPARPSVPWFPLVWFGGNIPKHSFINWLAVCDQLATRDRLCRWDSSVPPTFYAFCAGMESQDHLFFECSFSWEVWS

Query:  DMIAWVGSSHRFSYWSIEL
         MIAW GSS R SYWS EL
Subjt:  DMIAWVGSSHRFSYWSIEL

A0A6J1E271 uncharacterized protein LOC1110253249.6e-5259.51Show/hide
Query:  GLFSVSSAWGVLQPARPSVPWFPLVWFGGNIPKHSFINWLAVCDQLATRDRLCRWDSSVPPTFYAFCAGMESQDHLFFECSFSWEVWSDMIAWVGSSHRF
        GLFSVSS WG+L+P RP V +F L+WFGGNIPKHSFI+WLA+ D+L TR+RL +W++ VP T   FCAG+ES+DHLF +C +S  VW+ MI+W GSSHR 
Subjt:  GLFSVSSAWGVLQPARPSVPWFPLVWFGGNIPKHSFINWLAVCDQLATRDRLCRWDSSVPPTFYAFCAGMESQDHLFFECSFSWEVWSDMIAWVGSSHRF

Query:  SYWSIELAWICHISAKKFACRRMWRLAWISTVSFIWRERNARVHAGGMVRSPSVLLQALNAEL
        SYWS EL WICH++    + R +WRLAW  TVS +WRE N R+H  G  RS SVLL+ + AE+
Subjt:  SYWSIELAWICHISAKKFACRRMWRLAWISTVSFIWRERNARVHAGGMVRSPSVLLQALNAEL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G43730.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein8.1e-1935.67Show/hide
Query:  WSLRFHL-LGLFSVSSAWGVLQPARPSVPWFPLVWFGGNIPKHSFINWLAVCDQLATRDRLCRWDSSVPPTFYAFCAGMESQDHLFFECSFSWEVWSDMI
        W    H    +FS +     L P    VPW+  VWF  ++PKH+FI W+   ++L TRDRL  W  S+P       +  ES+ HLFFEC F   VW    
Subjt:  WSLRFHL-LGLFSVSSAWGVLQPARPSVPWFPLVWFGGNIPKHSFINWLAVCDQLATRDRLCRWDSSVPPTFYAFCAGMESQDHLFFECSFSWEVWSDMI

Query:  AWVGSSHRFSYWSIE--LAWICHISAKKFACRRMWRLAWISTVSFIWRERNARVHAG
         + G ++ F    +   L W+ + S  K     + RLA+ + V  IWRERN  +H G
Subjt:  AWVGSSHRFSYWSIE--LAWICHISAKKFACRRMWRLAWISTVSFIWRERNARVHAG

AT2G02520.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein3.1e-1833.12Show/hide
Query:  SSAWGVLQPARPSVPWFPLVWFGGNIPKHSFINWLAVCDQLATRDRLCRWDSSVPPTFYAFCAGMESQDHLFFECSFSWEVWSDMIAWVGSSHRFSYWSI
        ++ W  L P    V WF  +WF G IPKH+FI W+ +  +L T+DR+  W    PP         E++ HLFF+C F+ EVW   I +    H F     
Subjt:  SSAWGVLQPARPSVPWFPLVWFGGNIPKHSFINWLAVCDQLATRDRLCRWDSSVPPTFYAFCAGMESQDHLFFECSFSWEVWSDMIAWVGSSHRFSYWSI

Query:  E--LAWICHISAKKFACRRMWRLAWISTVSFIWRERNARVHAGGMVRSPSVLLQ
        E  + W+ +    K     + RL+  ++V  IW+ERNAR+H      + +++L+
Subjt:  E--LAWICHISAKKFACRRMWRLAWISTVSFIWRERNARVHAGGMVRSPSVLLQ

AT4G04650.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein4.1e-2333.65Show/hide
Query:  FSVSSAWGVLQPARPSVPWFPLVWFGGNIPKHSFINWLAVCDQLATRDRLCRWDSSVPPTFYAFCAGMESQDHLFFECSFSWEVWSDMIAWVGSSHRFSY
        FS    W  L P   +VPW   VWF  ++PKH+FI W+   ++L TRDRL  W  S+P       A  +S+ HLFFEC FS  VW    A    +     
Subjt:  FSVSSAWGVLQPARPSVPWFPLVWFGGNIPKHSFINWLAVCDQLATRDRLCRWDSSVPPTFYAFCAGMESQDHLFFECSFSWEVWSDMIAWVGSSHRFSY

Query:  WSIELAWICHISAKKFACRRMWRLAWISTVSFIWRERNARVHAGGMVRSPSVLLQALNAELFSAYTS-SKNMGFSPSSGIRALDLL-EVEVDMSFFMSP-
            L W+   S +K  C  + RLA+ S V  IWRERN R+H+ G+ RS   +L+ +   + +     S++    P+    AL LL   E +++ + +P 
Subjt:  WSIELAWICHISAKKFACRRMWRLAWISTVSFIWRERNARVHAGGMVRSPSVLLQALNAELFSAYTS-SKNMGFSPSSGIRALDLL-EVEVDMSFFMSP-

Query:  VKIDMEKFDGK
        +++ ++ F+ K
Subjt:  VKIDMEKFDGK

AT5G16486.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein1.2e-1440.48Show/hide
Query:  FSVSSAWGVLQPARPSVPWFPLVWFGGNIPKHSFINWLAVCDQLATRDRLCRWDSSVPPTFYAFCAGMESQDHLFFECSFSWEV
        FS ++ W  L P    V W   +WF G IPKH+FI+W+ +  +L TRD+L  W   VP       A  E++ HLFF+C F+ E+
Subjt:  FSVSSAWGVLQPARPSVPWFPLVWFGGNIPKHSFINWLAVCDQLATRDRLCRWDSSVPPTFYAFCAGMESQDHLFFECSFSWEV

AT5G18880.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein1.2e-1930.65Show/hide
Query:  FSVSSAWGVLQPARPSVPWFPLVWFGGNIPKHSFINWLAVCDQLATRDRLCRWDSSVPPTFYAFCAGMESQDHLFFECSFSWEVWSDMIAWVGSSHRFSY
        FS    W  ++   P+VPW  +VWF   IP+ S I W++  ++L TRDRL  W  ++P ++     G E+  HLFFECSFS  +W    +    S  F  
Subjt:  FSVSSAWGVLQPARPSVPWFPLVWFGGNIPKHSFINWLAVCDQLATRDRLCRWDSSVPPTFYAFCAGMESQDHLFFECSFSWEVWSDMIAWVGSSHRFSY

Query:  WSIELAWICHISAKKFACRRMWRLAWISTVSFIWRERNARVHAGGMVRSPSVLLQALNAELFSAYTSSKNMGFSPSSGIRALDLLE
         +   +WI  +  +  +   + +L   S V  +W+ERNAR+         S+   A +  L    T    +   PS+ +R+  LL+
Subjt:  WSIELAWICHISAKKFACRRMWRLAWISTVSFIWRERNARVHAGGMVRSPSVLLQALNAELFSAYTSSKNMGFSPSSGIRALDLLE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGTGGAGCAGATTCTTCGCACTTTCTAGTGGAAAGGGCGCAAGAGCGGCAGGCAATCAAGGGCTAAGGTGGCTTGGTCTAAGGTGTGTCTTCCTTTGCGGG
AGGGATGATTTTCGGCCTCTAGTTCGATTTTCTATTGGAGATGGTCAGCATAAGTGTGGCATGACGCTTCGCTTCCGAGGGTCTGATTTATCCGAGGTTTGCTGG
TCTCTAAGATTTCATTTGTTGGGTCTCTTCTCGGTGTCGAGTGCGTGGGGTGTGTTGCAGCCGGCTCGGCCTTCTGTTCCTTGGTTTCCTTTGGTTTGGTTCGGT
GGGAACATTCCGAAGCATTCTTTCATTAATTGGTTGGCAGTGTGTGATCAACTTGCTACGAGAGATCGCTTATGTCGTTGGGACTCTTCTGTTCCTCCTACTTTC
TATGCATTTTGTGCTGGCATGGAGTCACAAGATCATCTATTCTTTGAGTGCTCCTTTAGTTGGGAGGTCTGGTCTGACATGATTGCTTGGGTTGGTTCTTCTCAT
CGGTTTTCATATTGGTCTATTGAGCTTGCTTGGATTTGTCACATTAGTGCTAAGAAATTTGCTTGTCGTCGTATGTGGCGCTTGGCATGGATTTCGACTGTTTCA
TTTATTTGGAGGGAGCGTAATGCTAGAGTTCATGCGGGTGGGATGGTTCGGTCACCTTCTGTACTCTTGCAGGCCTTGAACGCTGAGTTATTTTCTGCTTATACC
TCTAGTAAAAATATGGGTTTTTCCCCATCAAGTGGTATCAGAGCTTTAGATTTGCTAGAAGTGGAAGTAGATATGTCATTCTTTATGAGTCCAGTGAAGATTGAC
ATGGAAAAATTTGATGGAAAGATCAACTTCGGCTGGTGGCAAGTGCAAGTCAAGGATGTGCTGATACAATCTGGGTTACACAAGGCGTTGAAGGGAAGACCAAGT
GAAGGTGCTTCTGAAAAGCTAACCAGTGATGTGGTCCAGTGGAGTTCAGTAGTGGTTCTAGCTGAGGCTACTAGTAAACTGTTGTCAGGGAAAAGAAGGCTGAAG
GCTAAAGGGCGCACTTCACATGAAGATTCAGCATTTGTAGTTAGCAATTGGAAGAAGAAGAAAAACTTCATGTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGGTGGAGCAGATTCTTCGCACTTTCTAGTGGAAAGGGCGCAAGAGCGGCAGGCAATCAAGGGCTAAGGTGGCTTGGTCTAAGGTGTGTCTTCCTTTGCGGG
AGGGATGATTTTCGGCCTCTAGTTCGATTTTCTATTGGAGATGGTCAGCATAAGTGTGGCATGACGCTTCGCTTCCGAGGGTCTGATTTATCCGAGGTTTGCTGG
TCTCTAAGATTTCATTTGTTGGGTCTCTTCTCGGTGTCGAGTGCGTGGGGTGTGTTGCAGCCGGCTCGGCCTTCTGTTCCTTGGTTTCCTTTGGTTTGGTTCGGT
GGGAACATTCCGAAGCATTCTTTCATTAATTGGTTGGCAGTGTGTGATCAACTTGCTACGAGAGATCGCTTATGTCGTTGGGACTCTTCTGTTCCTCCTACTTTC
TATGCATTTTGTGCTGGCATGGAGTCACAAGATCATCTATTCTTTGAGTGCTCCTTTAGTTGGGAGGTCTGGTCTGACATGATTGCTTGGGTTGGTTCTTCTCAT
CGGTTTTCATATTGGTCTATTGAGCTTGCTTGGATTTGTCACATTAGTGCTAAGAAATTTGCTTGTCGTCGTATGTGGCGCTTGGCATGGATTTCGACTGTTTCA
TTTATTTGGAGGGAGCGTAATGCTAGAGTTCATGCGGGTGGGATGGTTCGGTCACCTTCTGTACTCTTGCAGGCCTTGAACGCTGAGTTATTTTCTGCTTATACC
TCTAGTAAAAATATGGGTTTTTCCCCATCAAGTGGTATCAGAGCTTTAGATTTGCTAGAAGTGGAAGTAGATATGTCATTCTTTATGAGTCCAGTGAAGATTGAC
ATGGAAAAATTTGATGGAAAGATCAACTTCGGCTGGTGGCAAGTGCAAGTCAAGGATGTGCTGATACAATCTGGGTTACACAAGGCGTTGAAGGGAAGACCAAGT
GAAGGTGCTTCTGAAAAGCTAACCAGTGATGTGGTCCAGTGGAGTTCAGTAGTGGTTCTAGCTGAGGCTACTAGTAAACTGTTGTCAGGGAAAAGAAGGCTGAAG
GCTAAAGGGCGCACTTCACATGAAGATTCAGCATTTGTAGTTAGCAATTGGAAGAAGAAGAAAAACTTCATGTAA
Protein sequenceShow/hide protein sequence
MRWSRFFALSSGKGARAAGNQGLRWLGLRCVFLCGRDDFRPLVRFSIGDGQHKCGMTLRFRGSDLSEVCWSLRFHLLGLFSVSSAWGVLQPARPSVPWFPLVWFG
GNIPKHSFINWLAVCDQLATRDRLCRWDSSVPPTFYAFCAGMESQDHLFFECSFSWEVWSDMIAWVGSSHRFSYWSIELAWICHISAKKFACRRMWRLAWISTVS
FIWRERNARVHAGGMVRSPSVLLQALNAELFSAYTSSKNMGFSPSSGIRALDLLEVEVDMSFFMSPVKIDMEKFDGKINFGWWQVQVKDVLIQSGLHKALKGRPS
EGASEKLTSDVVQWSSVVVLAEATSKLLSGKRRLKAKGRTSHEDSAFVVSNWKKKKNFM