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Moc04g23450 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc04g23450
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr4:16946793..16949204
RNA-Seq ExpressionMoc04g23450
SyntenyMoc04g23450
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG1363761.1 hypothetical protein COCNU_11G005880 [Cocos nucifera]9.3e-2548.39Show/hide
Query:  PWWIDLPTTQTEAFDAYENNEELRLNVDLLEERRETSQLELAEYQRRVKRHYDARVKSQHFQLGDLVLRKVM----QNGGALEPTWEGPFQVKHEKRPGT
        P  + LP+ +   F+   N+++LR N+DLLEERRE +++ +A YQR+V R+Y++RVKS+ F++GDLVLR+      QN G L P WEGP++V    RPGT
Subjt:  PWWIDLPTTQTEAFDAYENNEELRLNVDLLEERRETSQLELAEYQRRVKRHYDARVKSQHFQLGDLVLRKVM----QNGGALEPTWEGPFQVKHEKRPGT

Query:  YALADLSGKQLPHLWNAQHLRIYY
        Y L +L G  LP  WN+++LR+YY
Subjt:  YALADLSGKQLPHLWNAQHLRIYY

XP_022156049.1 uncharacterized protein LOC111023017 [Momordica charantia]2.0e-2753.08Show/hide
Query:  GLAGGGR---PWWIDLPTTQTEAFDAYENNEELRLNVDLLEERRETSQLELAEYQRRVKRHYDARVKSQHFQLGDLVLRKVMQNGGALEPTWEGPFQVKH
        GLA G     P  I +PT + E FD   N+E   LN+DLLEE+R  SQL+LAEYQ R+ R+Y+ R + + F+ GDL L+KVMQ+  ALEP WEGP++V  
Subjt:  GLAGGGR---PWWIDLPTTQTEAFDAYENNEELRLNVDLLEERRETSQLELAEYQRRVKRHYDARVKSQHFQLGDLVLRKVMQNGGALEPTWEGPFQVKH

Query:  EKRPGTYALADLSGKQLPHLWNAQHLRIYY
          RP  Y L+DL+G+QLPH WNA+ LR+YY
Subjt:  EKRPGTYALADLSGKQLPHLWNAQHLRIYY

XP_022156561.1 uncharacterized protein LOC111023436 [Momordica charantia]2.4e-2544.87Show/hide
Query:  PSAVNQYCGVAAGSGLYAAVGLAGGGR---PWWIDLPTTQTEAFDAYENNEELRLNVDLLEERRETSQLELAEYQRRVKRHYDARVKSQHFQLGDLVLRK
        P+A+  Y   +  S       L+ G +   P  I LP+ + E      NNE ++L++DLLEE RET++L  AEY+ R+ R+Y+++VK + F+ GDLVLRK
Subjt:  PSAVNQYCGVAAGSGLYAAVGLAGGGR---PWWIDLPTTQTEAFDAYENNEELRLNVDLLEERRETSQLELAEYQRRVKRHYDARVKSQHFQLGDLVLRK

Query:  VMQN-----GGALEPTWEGPFQVKHEKRPGTYALADLSGKQLPHLWNAQHLRIYYH
        +M N      GA  PTWEGP++V    R GTYAL D  GK L H W+AQHL+ YYH
Subjt:  VMQN-----GGALEPTWEGPFQVKHEKRPGTYALADLSGKQLPHLWNAQHLRIYYH

XP_022156986.1 uncharacterized protein LOC111023816 [Momordica charantia]8.7e-3156.15Show/hide
Query:  GLAGGGR---PWWIDLPTTQTEAFDAYENNEELRLNVDLLEERRETSQLELAEYQRRVKRHYDARVKSQHFQLGDLVLRKVMQNGGALEPTWEGPFQVKH
        GLA G     P  + +PT + E FD   N+E L +N+DLLEE+R  SQL LAEYQ R+ R+Y+ARVK + F+  DLVL+KVMQ+ GALEP WEGP++V  
Subjt:  GLAGGGR---PWWIDLPTTQTEAFDAYENNEELRLNVDLLEERRETSQLELAEYQRRVKRHYDARVKSQHFQLGDLVLRKVMQNGGALEPTWEGPFQVKH

Query:  EKRPGTYALADLSGKQLPHLWNAQHLRIYY
          RP  Y L+DL+G+QLPH WNA+HLR+YY
Subjt:  EKRPGTYALADLSGKQLPHLWNAQHLRIYY

XP_022158579.1 uncharacterized protein LOC111025033 [Momordica charantia]9.9e-2752.38Show/hide
Query:  PWWIDLPTTQTEAFDAYENNEELRLNVDLLEERRETSQLELAEYQRRVKRHYDARVKSQHFQLGDLVLRKVMQN-----GGALEPTWEGPFQVKHEKRPG
        P  I LP+ + E F   +NNE ++LN+DLLEE RET++L  AEY+ R+ R+Y+++VK + F+ GDLVLRKVM N      GAL PTWEGP++     R G
Subjt:  PWWIDLPTTQTEAFDAYENNEELRLNVDLLEERRETSQLELAEYQRRVKRHYDARVKSQHFQLGDLVLRKVMQN-----GGALEPTWEGPFQVKHEKRPG

Query:  TYALADLSGKQLPHLWNAQHLRIYYH
        TYAL D  GK L H W+ QHL+ YYH
Subjt:  TYALADLSGKQLPHLWNAQHLRIYYH

TrEMBL top hitse value%identityAlignment
A0A2N9F359 Ribonuclease H1.7e-2750.4Show/hide
Query:  PWWIDLPTTQTEAFDAYENNEELRLNVDLLEERRETSQLELAEYQRRVKRHYDARVKSQHFQLGDLVLRKVM-----QNGGALEPTWEGPFQVKHEKRPG
        P  I L T +T A+D  EN E+LRLN+DL++E RET++  +  YQ ++ RHY++RVK +   +GDLVLRKV       + G L P WEGP++V   +RPG
Subjt:  PWWIDLPTTQTEAFDAYENNEELRLNVDLLEERRETSQLELAEYQRRVKRHYDARVKSQHFQLGDLVLRKVM-----QNGGALEPTWEGPFQVKHEKRPG

Query:  TYALADLSGKQLPHLWNAQHLRIYY
        TY L D++G++LPH WNA+HLR YY
Subjt:  TYALADLSGKQLPHLWNAQHLRIYY

A0A2N9HTB0 Ribonuclease H1.7e-2750.4Show/hide
Query:  PWWIDLPTTQTEAFDAYENNEELRLNVDLLEERRETSQLELAEYQRRVKRHYDARVKSQHFQLGDLVLRKVM-----QNGGALEPTWEGPFQVKHEKRPG
        P  I L T +T A+D  EN E+LRLN+DL++E RET++  +  YQ ++ RHY++RVK +   +GDLVLRKV       + G L P WEGP++V   +RPG
Subjt:  PWWIDLPTTQTEAFDAYENNEELRLNVDLLEERRETSQLELAEYQRRVKRHYDARVKSQHFQLGDLVLRKVM-----QNGGALEPTWEGPFQVKHEKRPG

Query:  TYALADLSGKQLPHLWNAQHLRIYY
        TY L D++G++LPH WNA+HLR YY
Subjt:  TYALADLSGKQLPHLWNAQHLRIYY

A0A2N9HVQ1 Ribonuclease H1.7e-2750.4Show/hide
Query:  PWWIDLPTTQTEAFDAYENNEELRLNVDLLEERRETSQLELAEYQRRVKRHYDARVKSQHFQLGDLVLRKVM-----QNGGALEPTWEGPFQVKHEKRPG
        P  I L T +T A+D  EN E+LRLN+DL++E RET++  +  YQ ++ RHY++RVK +   +GDLVLRKV       + G L P WEGP++V   +RPG
Subjt:  PWWIDLPTTQTEAFDAYENNEELRLNVDLLEERRETSQLELAEYQRRVKRHYDARVKSQHFQLGDLVLRKVM-----QNGGALEPTWEGPFQVKHEKRPG

Query:  TYALADLSGKQLPHLWNAQHLRIYY
        TY L D++G++LPH WNA+HLR YY
Subjt:  TYALADLSGKQLPHLWNAQHLRIYY

A0A6J1DS38 uncharacterized protein LOC1110230179.7e-2853.08Show/hide
Query:  GLAGGGR---PWWIDLPTTQTEAFDAYENNEELRLNVDLLEERRETSQLELAEYQRRVKRHYDARVKSQHFQLGDLVLRKVMQNGGALEPTWEGPFQVKH
        GLA G     P  I +PT + E FD   N+E   LN+DLLEE+R  SQL+LAEYQ R+ R+Y+ R + + F+ GDL L+KVMQ+  ALEP WEGP++V  
Subjt:  GLAGGGR---PWWIDLPTTQTEAFDAYENNEELRLNVDLLEERRETSQLELAEYQRRVKRHYDARVKSQHFQLGDLVLRKVMQNGGALEPTWEGPFQVKH

Query:  EKRPGTYALADLSGKQLPHLWNAQHLRIYY
          RP  Y L+DL+G+QLPH WNA+ LR+YY
Subjt:  EKRPGTYALADLSGKQLPHLWNAQHLRIYY

A0A6J1DWM2 Ribonuclease H4.2e-3156.15Show/hide
Query:  GLAGGGR---PWWIDLPTTQTEAFDAYENNEELRLNVDLLEERRETSQLELAEYQRRVKRHYDARVKSQHFQLGDLVLRKVMQNGGALEPTWEGPFQVKH
        GLA G     P  + +PT + E FD   N+E L +N+DLLEE+R  SQL LAEYQ R+ R+Y+ARVK + F+  DLVL+KVMQ+ GALEP WEGP++V  
Subjt:  GLAGGGR---PWWIDLPTTQTEAFDAYENNEELRLNVDLLEERRETSQLELAEYQRRVKRHYDARVKSQHFQLGDLVLRKVMQNGGALEPTWEGPFQVKH

Query:  EKRPGTYALADLSGKQLPHLWNAQHLRIYY
          RP  Y L+DL+G+QLPH WNA+HLR+YY
Subjt:  EKRPGTYALADLSGKQLPHLWNAQHLRIYY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCCTCGCTCGTCATGTCTCCTCCGCTTCATCACCATGGTCGGCAACGAATTCTCTGCCTGAAACAATAATTGCAGAGGGGGGTGTGGGTAACTTAGATCTA
GCTCGCAAAGTCGCTAGTGGAACGCCGGAGACTCACCCACGAATCCCGCCGCTGATTTTGTTACTCGAGTGGCCGCTACTGAAACACGCCGCCGTGGGTTCGTTT
GCGTCACCCTCCGCCGTGAATCAATATTGTGGAGTCGCCGCCGGTTCTGGGTTGTACGCCGCCGTAGGTCTTGCCGGAGGAGGACGTCCGTGGTGGATCGATCTA
CCAACTACTCAGACCGAAGCCTTTGATGCGTATGAAAATAACGAGGAGCTTCGCCTGAATGTCGACCTCCTTGAGGAGAGAAGGGAAACCTCTCAGCTCGAACTC
GCCGAATACCAAAGACGAGTGAAGCGTCATTATGATGCAAGAGTCAAGTCACAACATTTCCAACTTGGAGACCTTGTTCTGCGTAAAGTGATGCAAAATGGTGGA
GCCCTAGAGCCTACCTGGGAAGGGCCATTTCAGGTGAAGCACGAAAAACGACCCGGAACCTATGCCCTGGCCGACCTGAGCGGAAAGCAGTTACCCCACCTATGG
AACGCACAACATCTACGCATATATTACCATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTCCTCGCTCGTCATGTCTCCTCCGCTTCATCACCATGGTCGGCAACGAATTCTCTGCCTGAAACAATAATTGCAGAGGGGGGTGTGGGTAACTTAGATCTA
GCTCGCAAAGTCGCTAGTGGAACGCCGGAGACTCACCCACGAATCCCGCCGCTGATTTTGTTACTCGAGTGGCCGCTACTGAAACACGCCGCCGTGGGTTCGTTT
GCGTCACCCTCCGCCGTGAATCAATATTGTGGAGTCGCCGCCGGTTCTGGGTTGTACGCCGCCGTAGGTCTTGCCGGAGGAGGACGTCCGTGGTGGATCGATCTA
CCAACTACTCAGACCGAAGCCTTTGATGCGTATGAAAATAACGAGGAGCTTCGCCTGAATGTCGACCTCCTTGAGGAGAGAAGGGAAACCTCTCAGCTCGAACTC
GCCGAATACCAAAGACGAGTGAAGCGTCATTATGATGCAAGAGTCAAGTCACAACATTTCCAACTTGGAGACCTTGTTCTGCGTAAAGTGATGCAAAATGGTGGA
GCCCTAGAGCCTACCTGGGAAGGGCCATTTCAGGTGAAGCACGAAAAACGACCCGGAACCTATGCCCTGGCCGACCTGAGCGGAAAGCAGTTACCCCACCTATGG
AACGCACAACATCTACGCATATATTACCATTAA
Protein sequenceShow/hide protein sequence
MVLARHVSSASSPWSATNSLPETIIAEGGVGNLDLARKVASGTPETHPRIPPLILLLEWPLLKHAAVGSFASPSAVNQYCGVAAGSGLYAAVGLAGGGRPWWIDL
PTTQTEAFDAYENNEELRLNVDLLEERRETSQLELAEYQRRVKRHYDARVKSQHFQLGDLVLRKVMQNGGALEPTWEGPFQVKHEKRPGTYALADLSGKQLPHLW
NAQHLRIYYH