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Moc04g23620 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc04g23620
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr4:17054677..17066011
RNA-Seq ExpressionMoc04g23620
SyntenyMoc04g23620
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022151715.1 uncharacterized protein LOC111019628 [Momordica charantia]6.4e-1451.14Show/hide
Query:  SDVENDENEVKEEFQTKEPQMARYLSQVRDQLGQFSKYEIRQIFRVQNVDVDALARLVATYDTDLRRIVPVEVLPEPSIKVQEAMDID
        SD +   N++KEE+QTK+P+M +YLS+VR  L QF  YE+ Q+ R +N + DALA+L + Y+TDL R VPVE+L  PSI   + M+ID
Subjt:  SDVENDENEVKEEFQTKEPQMARYLSQVRDQLGQFSKYEIRQIFRVQNVDVDALARLVATYDTDLRRIVPVEVLPEPSIKVQEAMDID

XP_022156571.1 uncharacterized protein LOC111023448 [Momordica charantia]1.4e-2469.79Show/hide
Query:  SDVENDENEVKEEFQTKEPQMARYLSQVRDQLGQFSKYEIRQIFRVQNVDVDALARLVATYDTDLRRIVPVEVLPEPSIKVQEAMDIDEQWQPEEN
        SD +    +VKEEFQ +EP+MA+YLSQVR+QL QFSKYEI QI R QNV+ DALARL A Y+TDL R VPVE+LPEPSI+ QEAMDID Q Q EEN
Subjt:  SDVENDENEVKEEFQTKEPQMARYLSQVRDQLGQFSKYEIRQIFRVQNVDVDALARLVATYDTDLRRIVPVEVLPEPSIKVQEAMDIDEQWQPEEN

XP_022156571.1 uncharacterized protein LOC111023448 [Momordica charantia]3.0e-0357.45Show/hide
Query:  RAIDHSGEICPSPDHQLDLSILRIRESSEEVESIPLTLEDRRVNTGT
        +A D SG+  PSP H+L+ + L   E +EEVES+PLT EDRRVN GT
Subjt:  RAIDHSGEICPSPDHQLDLSILRIRESSEEVESIPLTLEDRRVNTGT

XP_022156571.1 uncharacterized protein LOC111023448 [Momordica charantia]5.8e-2367.71Show/hide
Query:  SDVENDENEVKEEFQTKEPQMARYLSQVRDQLGQFSKYEIRQIFRVQNVDVDALARLVATYDTDLRRIVPVEVLPEPSIKVQEAMDIDEQWQPEEN
        SD +    +VKEEFQ +E +M +YLSQVR+QL QFSKYEIRQI R QNV+ DALARL  TY+TDL R VPVE+L  PSI+ QEAMDID+Q QPEEN
Subjt:  SDVENDENEVKEEFQTKEPQMARYLSQVRDQLGQFSKYEIRQIFRVQNVDVDALARLVATYDTDLRRIVPVEVLPEPSIKVQEAMDIDEQWQPEEN

XP_022158579.1 uncharacterized protein LOC111025033 [Momordica charantia]4.9e-2265.62Show/hide
Query:  SDVENDENEVKEEFQTKEPQMARYLSQVRDQLGQFSKYEIRQIFRVQNVDVDALARLVATYDTDLRRIVPVEVLPEPSIKVQEAMDIDEQWQPEEN
        SD +    +VKE+FQ +E +MA+YLSQVR+QL QFSKYEIRQI   QNV+ D LARL   Y+TDL R VPVE+LP PSI+ QEAMDID Q QPEEN
Subjt:  SDVENDENEVKEEFQTKEPQMARYLSQVRDQLGQFSKYEIRQIFRVQNVDVDALARLVATYDTDLRRIVPVEVLPEPSIKVQEAMDIDEQWQPEEN

XP_022159204.1 uncharacterized protein LOC111025623 [Momordica charantia]3.7e-2266.67Show/hide
Query:  SDVENDENEVKEEFQTKEPQMARYLSQVRDQLGQFSKYEIRQIFRVQNVDVDALARLVATYDTDLRRIVPVEVLPEPSIKVQEAMDIDEQWQPEEN
        SD +   ++VKEEFQ +EP+MA+YLS+V+DQLGQFSK+EIRQI   QNV+ DALARL A Y TDL R + VE+L EPSIK QE MDIDEQ Q EEN
Subjt:  SDVENDENEVKEEFQTKEPQMARYLSQVRDQLGQFSKYEIRQIFRVQNVDVDALARLVATYDTDLRRIVPVEVLPEPSIKVQEAMDIDEQWQPEEN

TrEMBL top hitse value%identityAlignment
A0A6J1DBZ0 uncharacterized protein LOC1110196283.1e-1451.14Show/hide
Query:  SDVENDENEVKEEFQTKEPQMARYLSQVRDQLGQFSKYEIRQIFRVQNVDVDALARLVATYDTDLRRIVPVEVLPEPSIKVQEAMDID
        SD +   N++KEE+QTK+P+M +YLS+VR  L QF  YE+ Q+ R +N + DALA+L + Y+TDL R VPVE+L  PSI   + M+ID
Subjt:  SDVENDENEVKEEFQTKEPQMARYLSQVRDQLGQFSKYEIRQIFRVQNVDVDALARLVATYDTDLRRIVPVEVLPEPSIKVQEAMDID

A0A6J1DVC6 Ribonuclease H3.9e-2570.83Show/hide
Query:  SDVENDENEVKEEFQTKEPQMARYLSQVRDQLGQFSKYEIRQIFRVQNVDVDALARLVATYDTDLRRIVPVEVLPEPSIKVQEAMDIDEQWQPEEN
        SD +    +VKEEFQ +EP+MA+YLSQVR+QL QFSKYEI QI R QNVD DALARL A Y+TDL R VPVE+LPEPSI+ QEAMDID Q Q EEN
Subjt:  SDVENDENEVKEEFQTKEPQMARYLSQVRDQLGQFSKYEIRQIFRVQNVDVDALARLVATYDTDLRRIVPVEVLPEPSIKVQEAMDIDEQWQPEEN

A0A6J1DVC6 Ribonuclease H1.4e-0357.45Show/hide
Query:  RAIDHSGEICPSPDHQLDLSILRIRESSEEVESIPLTLEDRRVNTGT
        +A D SG+  PSP H+L+ + L   E +EEVES+PLT EDRRVN GT
Subjt:  RAIDHSGEICPSPDHQLDLSILRIRESSEEVESIPLTLEDRRVNTGT

A0A6J1DVC6 Ribonuclease H2.8e-2367.71Show/hide
Query:  SDVENDENEVKEEFQTKEPQMARYLSQVRDQLGQFSKYEIRQIFRVQNVDVDALARLVATYDTDLRRIVPVEVLPEPSIKVQEAMDIDEQWQPEEN
        SD +    +VKEEFQ +E +M +YLSQVR+QL QFSKYEIRQI R QNV+ DALARL  TY+TDL R VPVE+L  PSI+ QEAMDID+Q QPEEN
Subjt:  SDVENDENEVKEEFQTKEPQMARYLSQVRDQLGQFSKYEIRQIFRVQNVDVDALARLVATYDTDLRRIVPVEVLPEPSIKVQEAMDIDEQWQPEEN

A0A6J1DZU0 Ribonuclease H2.4e-2265.62Show/hide
Query:  SDVENDENEVKEEFQTKEPQMARYLSQVRDQLGQFSKYEIRQIFRVQNVDVDALARLVATYDTDLRRIVPVEVLPEPSIKVQEAMDIDEQWQPEEN
        SD +    +VKE+FQ +E +MA+YLSQVR+QL QFSKYEIRQI   QNV+ D LARL   Y+TDL R VPVE+LP PSI+ QEAMDID Q QPEEN
Subjt:  SDVENDENEVKEEFQTKEPQMARYLSQVRDQLGQFSKYEIRQIFRVQNVDVDALARLVATYDTDLRRIVPVEVLPEPSIKVQEAMDIDEQWQPEEN

A0A6J1E1Q5 uncharacterized protein LOC1110256231.8e-2266.67Show/hide
Query:  SDVENDENEVKEEFQTKEPQMARYLSQVRDQLGQFSKYEIRQIFRVQNVDVDALARLVATYDTDLRRIVPVEVLPEPSIKVQEAMDIDEQWQPEEN
        SD +   ++VKEEFQ +EP+MA+YLS+V+DQLGQFSK+EIRQI   QNV+ DALARL A Y TDL R + VE+L EPSIK QE MDIDEQ Q EEN
Subjt:  SDVENDENEVKEEFQTKEPQMARYLSQVRDQLGQFSKYEIRQIFRVQNVDVDALARLVATYDTDLRRIVPVEVLPEPSIKVQEAMDIDEQWQPEEN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTAAGGCACTTATCTCTGGCCAGAAGGTCATGAGTTCGAATCCCCACCTCCACAATGACCTTGAGGATTTAAGCCCGATGTTGACCTACCATTTAGGTCAC
GTTGATCCCTTTATTCTAGAACATTGGTGCGAATTTGACAATATCCCAAGAGGCCAAATTTCTGCATCAACAATTGTTACCGTCTATAAGAACTATTTTGAAATT
CGAAGCAAAGTTTGCCGAAACAAGCCCAGATCCGAGGAGATTGGAAAGAAGCAAGTTGATTTGAACCTCAGTGGAGGTCAACGATGTTTTGGAGAGAAGAGCCCG
AGTAGGGCAATCGACCACTCGGGAGAGATATGCCCGAGCCCTGATCACCAACTAGATCTATCCATCCTCAGAATAAGGGAATCGAGCGAGGAGGTGGAGTCGATC
CCTTTGACATTAGAGGATCGACGGGTCAACACTGGAACCAGCGATGTTGAAAATGATGAAAATGAGGTGAAAGAGGAGTTCCAAACCAAAGAGCCCCAAATGGCG
AGATACCTCTCCCAGGTAAGAGACCAGCTCGGCCAATTCTCAAAATATGAGATCAGGCAAATTTTCCGTGTCCAAAATGTCGATGTGGATGCATTAGCCCGACTA
GTTGCAACCTATGATACCGACCTGAGAAGAATCGTGCCAGTAGAAGTTTTGCCCGAGCCGAGCATAAAGGTTCAGGAGGCAATGGATATCGACGAACAATGGCAA
CCTGAGGAGAATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTTAAGGCACTTATCTCTGGCCAGAAGGTCATGAGTTCGAATCCCCACCTCCACAATGACCTTGAGGATTTAAGCCCGATGTTGACCTACCATTTAGGTCAC
GTTGATCCCTTTATTCTAGAACATTGGTGCGAATTTGACAATATCCCAAGAGGCCAAATTTCTGCATCAACAATTGTTACCGTCTATAAGAACTATTTTGAAATT
CGAAGCAAAGTTTGCCGAAACAAGCCCAGATCCGAGGAGATTGGAAAGAAGCAAGTTGATTTGAACCTCAGTGGAGGTCAACGATGTTTTGGAGAGAAGAGCCCG
AGTAGGGCAATCGACCACTCGGGAGAGATATGCCCGAGCCCTGATCACCAACTAGATCTATCCATCCTCAGAATAAGGGAATCGAGCGAGGAGGTGGAGTCGATC
CCTTTGACATTAGAGGATCGACGGGTCAACACTGGAACCAGCGATGTTGAAAATGATGAAAATGAGGTGAAAGAGGAGTTCCAAACCAAAGAGCCCCAAATGGCG
AGATACCTCTCCCAGGTAAGAGACCAGCTCGGCCAATTCTCAAAATATGAGATCAGGCAAATTTTCCGTGTCCAAAATGTCGATGTGGATGCATTAGCCCGACTA
GTTGCAACCTATGATACCGACCTGAGAAGAATCGTGCCAGTAGAAGTTTTGCCCGAGCCGAGCATAAAGGTTCAGGAGGCAATGGATATCGACGAACAATGGCAA
CCTGAGGAGAATTAG
Protein sequenceShow/hide protein sequence
MVKALISGQKVMSSNPHLHNDLEDLSPMLTYHLGHVDPFILEHWCEFDNIPRGQISASTIVTVYKNYFEIRSKVCRNKPRSEEIGKKQVDLNLSGGQRCFGEKSP
SRAIDHSGEICPSPDHQLDLSILRIRESSEEVESIPLTLEDRRVNTGTSDVENDENEVKEEFQTKEPQMARYLSQVRDQLGQFSKYEIRQIFRVQNVDVDALARL
VATYDTDLRRIVPVEVLPEPSIKVQEAMDIDEQWQPEEN