; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc04g23700 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc04g23700
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionReverse transcriptase
Genome locationchr4:17105264..17105800
RNA-Seq ExpressionMoc04g23700
SyntenyMoc04g23700
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051481.1 reverse transcriptase [Cucumis melo var. makuwa]1.5e-6578.29Show/hide
Query:  MQYTKTCLICQQEKVKRTKIVGLLEPLLVPSRPWESVSLDFITHLPKVGESETILVIVDRFSKYATFVPTSKMCSAEMTTQLFFKNIVKLWGVPKSIVSD
        MQYTKTCLICQQ+KV++ K+ GLL+PL VP+RPWESVS+DFITHLPKVG+ E ILVI+DRFSKYATF+P +K CSAE TTQLFFK++VKLWGVP SIVSD
Subjt:  MQYTKTCLICQQEKVKRTKIVGLLEPLLVPSRPWESVSLDFITHLPKVGESETILVIVDRFSKYATFVPTSKMCSAEMTTQLFFKNIVKLWGVPKSIVSD

Query:  RDGRFTVTFWMELFRLLGSNLNISSSYHPQTDGQTERFNSILEEYLRHFIDA
        RDGRF  +FW ELF  LG++LNISSSYHPQTDGQTERFNS+LEEYLRHF++A
Subjt:  RDGRFTVTFWMELFRLLGSNLNISSSYHPQTDGQTERFNSILEEYLRHFIDA

KAA0052269.1 reverse transcriptase [Cucumis melo var. makuwa]1.1e-6578.29Show/hide
Query:  MQYTKTCLICQQEKVKRTKIVGLLEPLLVPSRPWESVSLDFITHLPKVGESETILVIVDRFSKYATFVPTSKMCSAEMTTQLFFKNIVKLWGVPKSIVSD
        MQYTKTCLICQQ+KV++ K+ GLL+PL VP+RPWESVS+DFITHLPKVG+ E ILVI+DRFSKYATF+PT+K CSAEMT QLFFK++VKLWGVP SIVSD
Subjt:  MQYTKTCLICQQEKVKRTKIVGLLEPLLVPSRPWESVSLDFITHLPKVGESETILVIVDRFSKYATFVPTSKMCSAEMTTQLFFKNIVKLWGVPKSIVSD

Query:  RDGRFTVTFWMELFRLLGSNLNISSSYHPQTDGQTERFNSILEEYLRHFIDA
        RDGRF  +FW ELF  LG++LNISSSYHPQTDGQTERFN +LEEYLRHF++A
Subjt:  RDGRFTVTFWMELFRLLGSNLNISSSYHPQTDGQTERFNSILEEYLRHFIDA

KAA0066511.1 reverse transcriptase [Cucumis melo var. makuwa]1.5e-6577.42Show/hide
Query:  MQYTKTCLICQQEKVKRTKIVGLLEPLLVPSRPWESVSLDFITHLPKVGESETILVIVDRFSKYATFVPTSKMCSAEMTTQLFFKNIVKLWGVPKSIVSD
        MQYTKTCLICQQ+KV++ K+ GLL+PL VP+RPW+SVS+DFITHLPKVG+ E ILVI+DRFSKYATF+PT+K CSAEMT QLFFK++VKLWGVPKSIVSD
Subjt:  MQYTKTCLICQQEKVKRTKIVGLLEPLLVPSRPWESVSLDFITHLPKVGESETILVIVDRFSKYATFVPTSKMCSAEMTTQLFFKNIVKLWGVPKSIVSD

Query:  RDGRFTVTFWMELFRLLGSNLNISSSYHPQTDGQTERFNSILEEYLRHFIDAGYR
        RDGRF   FW ELF  LG++LNISSSYHPQTDGQTERFN +LEEYLRHF++A  R
Subjt:  RDGRFTVTFWMELFRLLGSNLNISSSYHPQTDGQTERFNSILEEYLRHFIDAGYR

TYK01597.1 reverse transcriptase [Cucumis melo var. makuwa]1.1e-6578.29Show/hide
Query:  MQYTKTCLICQQEKVKRTKIVGLLEPLLVPSRPWESVSLDFITHLPKVGESETILVIVDRFSKYATFVPTSKMCSAEMTTQLFFKNIVKLWGVPKSIVSD
        MQYTKTCLICQQ+KV++ K+ GLL+PL VP+RPWESVS+DFITHLPKVG+ E ILVI+DRFSKYATF+PT+K CSAEMT QLFFK++VKLWGVP SIVSD
Subjt:  MQYTKTCLICQQEKVKRTKIVGLLEPLLVPSRPWESVSLDFITHLPKVGESETILVIVDRFSKYATFVPTSKMCSAEMTTQLFFKNIVKLWGVPKSIVSD

Query:  RDGRFTVTFWMELFRLLGSNLNISSSYHPQTDGQTERFNSILEEYLRHFIDA
        RDGRF  +FW ELF  LG++LNISSSYHPQTDGQTERFN +LEEYLRHF++A
Subjt:  RDGRFTVTFWMELFRLLGSNLNISSSYHPQTDGQTERFNSILEEYLRHFIDA

TYK07955.1 reverse transcriptase [Cucumis melo var. makuwa]8.8e-6679.87Show/hide
Query:  MQYTKTCLICQQEKVKRTKIVGLLEPLLVPSRPWESVSLDFITHLPKVGESETILVIVDRFSKYATFVPTSKMCSAEMTTQLFFKNIVKLWGVPKSIVSD
        MQYTKTCLICQQ+KV++ K+VGLL+PLLVP+RPWESVS+DFITHLPKVG+ E ILV++DRFSKYATF+PT+K CSAEMT QLFFK++VKLWGVP SIVSD
Subjt:  MQYTKTCLICQQEKVKRTKIVGLLEPLLVPSRPWESVSLDFITHLPKVGESETILVIVDRFSKYATFVPTSKMCSAEMTTQLFFKNIVKLWGVPKSIVSD

Query:  RDGRFTVTFWMELFRLLGSNLNISSSYHPQTDGQTERFNSILEEYLRHF
        RDGRF  +FW ELF  LG++LNISSSYHPQTDGQTERFN +LEEYLRHF
Subjt:  RDGRFTVTFWMELFRLLGSNLNISSSYHPQTDGQTERFNSILEEYLRHF

TrEMBL top hitse value%identityAlignment
A0A5A7UD54 Reverse transcriptase7.3e-6678.29Show/hide
Query:  MQYTKTCLICQQEKVKRTKIVGLLEPLLVPSRPWESVSLDFITHLPKVGESETILVIVDRFSKYATFVPTSKMCSAEMTTQLFFKNIVKLWGVPKSIVSD
        MQYTKTCLICQQ+KV++ K+ GLL+PL VP+RPWESVS+DFITHLPKVG+ E ILVI+DRFSKYATF+P +K CSAE TTQLFFK++VKLWGVP SIVSD
Subjt:  MQYTKTCLICQQEKVKRTKIVGLLEPLLVPSRPWESVSLDFITHLPKVGESETILVIVDRFSKYATFVPTSKMCSAEMTTQLFFKNIVKLWGVPKSIVSD

Query:  RDGRFTVTFWMELFRLLGSNLNISSSYHPQTDGQTERFNSILEEYLRHFIDA
        RDGRF  +FW ELF  LG++LNISSSYHPQTDGQTERFNS+LEEYLRHF++A
Subjt:  RDGRFTVTFWMELFRLLGSNLNISSSYHPQTDGQTERFNSILEEYLRHFIDA

A0A5A7UFL8 Reverse transcriptase5.6e-6678.29Show/hide
Query:  MQYTKTCLICQQEKVKRTKIVGLLEPLLVPSRPWESVSLDFITHLPKVGESETILVIVDRFSKYATFVPTSKMCSAEMTTQLFFKNIVKLWGVPKSIVSD
        MQYTKTCLICQQ+KV++ K+ GLL+PL VP+RPWESVS+DFITHLPKVG+ E ILVI+DRFSKYATF+PT+K CSAEMT QLFFK++VKLWGVP SIVSD
Subjt:  MQYTKTCLICQQEKVKRTKIVGLLEPLLVPSRPWESVSLDFITHLPKVGESETILVIVDRFSKYATFVPTSKMCSAEMTTQLFFKNIVKLWGVPKSIVSD

Query:  RDGRFTVTFWMELFRLLGSNLNISSSYHPQTDGQTERFNSILEEYLRHFIDA
        RDGRF  +FW ELF  LG++LNISSSYHPQTDGQTERFN +LEEYLRHF++A
Subjt:  RDGRFTVTFWMELFRLLGSNLNISSSYHPQTDGQTERFNSILEEYLRHFIDA

A0A5D3BQE4 Reverse transcriptase5.6e-6678.29Show/hide
Query:  MQYTKTCLICQQEKVKRTKIVGLLEPLLVPSRPWESVSLDFITHLPKVGESETILVIVDRFSKYATFVPTSKMCSAEMTTQLFFKNIVKLWGVPKSIVSD
        MQYTKTCLICQQ+KV++ K+ GLL+PL VP+RPWESVS+DFITHLPKVG+ E ILVI+DRFSKYATF+PT+K CSAEMT QLFFK++VKLWGVP SIVSD
Subjt:  MQYTKTCLICQQEKVKRTKIVGLLEPLLVPSRPWESVSLDFITHLPKVGESETILVIVDRFSKYATFVPTSKMCSAEMTTQLFFKNIVKLWGVPKSIVSD

Query:  RDGRFTVTFWMELFRLLGSNLNISSSYHPQTDGQTERFNSILEEYLRHFIDA
        RDGRF  +FW ELF  LG++LNISSSYHPQTDGQTERFN +LEEYLRHF++A
Subjt:  RDGRFTVTFWMELFRLLGSNLNISSSYHPQTDGQTERFNSILEEYLRHFIDA

A0A5D3C6X4 Reverse transcriptase7.3e-6677.42Show/hide
Query:  MQYTKTCLICQQEKVKRTKIVGLLEPLLVPSRPWESVSLDFITHLPKVGESETILVIVDRFSKYATFVPTSKMCSAEMTTQLFFKNIVKLWGVPKSIVSD
        MQYTKTCLICQQ+KV++ K+ GLL+PL VP+RPW+SVS+DFITHLPKVG+ E ILVI+DRFSKYATF+PT+K CSAEMT QLFFK++VKLWGVPKSIVSD
Subjt:  MQYTKTCLICQQEKVKRTKIVGLLEPLLVPSRPWESVSLDFITHLPKVGESETILVIVDRFSKYATFVPTSKMCSAEMTTQLFFKNIVKLWGVPKSIVSD

Query:  RDGRFTVTFWMELFRLLGSNLNISSSYHPQTDGQTERFNSILEEYLRHFIDAGYR
        RDGRF   FW ELF  LG++LNISSSYHPQTDGQTERFN +LEEYLRHF++A  R
Subjt:  RDGRFTVTFWMELFRLLGSNLNISSSYHPQTDGQTERFNSILEEYLRHFIDAGYR

A0A5D3C8Z6 Reverse transcriptase4.3e-6679.87Show/hide
Query:  MQYTKTCLICQQEKVKRTKIVGLLEPLLVPSRPWESVSLDFITHLPKVGESETILVIVDRFSKYATFVPTSKMCSAEMTTQLFFKNIVKLWGVPKSIVSD
        MQYTKTCLICQQ+KV++ K+VGLL+PLLVP+RPWESVS+DFITHLPKVG+ E ILV++DRFSKYATF+PT+K CSAEMT QLFFK++VKLWGVP SIVSD
Subjt:  MQYTKTCLICQQEKVKRTKIVGLLEPLLVPSRPWESVSLDFITHLPKVGESETILVIVDRFSKYATFVPTSKMCSAEMTTQLFFKNIVKLWGVPKSIVSD

Query:  RDGRFTVTFWMELFRLLGSNLNISSSYHPQTDGQTERFNSILEEYLRHF
        RDGRF  +FW ELF  LG++LNISSSYHPQTDGQTERFN +LEEYLRHF
Subjt:  RDGRFTVTFWMELFRLLGSNLNISSSYHPQTDGQTERFNSILEEYLRHF

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein4.9e-2741.1Show/hide
Query:  QYTKTCLICQQEKVKRTKIVGLLEPLLVPSRPWESVSLDFITHLPKVGESETILVIVDRFSKYATFVPTSKMCSAEMTTQLFFKNIVKLWGVPKSIVSDR
        +Y + C  CQ  K +  K  G L+P+    RPWES+S+DFIT LP+      + V+VDRFSK A  VP +K  +AE T ++F + ++  +G PK I++D 
Subjt:  QYTKTCLICQQEKVKRTKIVGLLEPLLVPSRPWESVSLDFITHLPKVGESETILVIVDRFSKYATFVPTSKMCSAEMTTQLFFKNIVKLWGVPKSIVSDR

Query:  DGRFTVTFWMELFRLLGSNLNISSSYHPQTDGQTERFNSILEEYLR
        D  FT   W +        +  S  Y PQTDGQTER N  +E+ LR
Subjt:  DGRFTVTFWMELFRLLGSNLNISSSYHPQTDGQTERFNSILEEYLR

P0CT35 Transposon Tf2-2 polyprotein4.9e-2741.1Show/hide
Query:  QYTKTCLICQQEKVKRTKIVGLLEPLLVPSRPWESVSLDFITHLPKVGESETILVIVDRFSKYATFVPTSKMCSAEMTTQLFFKNIVKLWGVPKSIVSDR
        +Y + C  CQ  K +  K  G L+P+    RPWES+S+DFIT LP+      + V+VDRFSK A  VP +K  +AE T ++F + ++  +G PK I++D 
Subjt:  QYTKTCLICQQEKVKRTKIVGLLEPLLVPSRPWESVSLDFITHLPKVGESETILVIVDRFSKYATFVPTSKMCSAEMTTQLFFKNIVKLWGVPKSIVSDR

Query:  DGRFTVTFWMELFRLLGSNLNISSSYHPQTDGQTERFNSILEEYLR
        D  FT   W +        +  S  Y PQTDGQTER N  +E+ LR
Subjt:  DGRFTVTFWMELFRLLGSNLNISSSYHPQTDGQTERFNSILEEYLR

P0CT36 Transposon Tf2-3 polyprotein4.9e-2741.1Show/hide
Query:  QYTKTCLICQQEKVKRTKIVGLLEPLLVPSRPWESVSLDFITHLPKVGESETILVIVDRFSKYATFVPTSKMCSAEMTTQLFFKNIVKLWGVPKSIVSDR
        +Y + C  CQ  K +  K  G L+P+    RPWES+S+DFIT LP+      + V+VDRFSK A  VP +K  +AE T ++F + ++  +G PK I++D 
Subjt:  QYTKTCLICQQEKVKRTKIVGLLEPLLVPSRPWESVSLDFITHLPKVGESETILVIVDRFSKYATFVPTSKMCSAEMTTQLFFKNIVKLWGVPKSIVSDR

Query:  DGRFTVTFWMELFRLLGSNLNISSSYHPQTDGQTERFNSILEEYLR
        D  FT   W +        +  S  Y PQTDGQTER N  +E+ LR
Subjt:  DGRFTVTFWMELFRLLGSNLNISSSYHPQTDGQTERFNSILEEYLR

P0CT41 Transposon Tf2-12 polyprotein4.9e-2741.1Show/hide
Query:  QYTKTCLICQQEKVKRTKIVGLLEPLLVPSRPWESVSLDFITHLPKVGESETILVIVDRFSKYATFVPTSKMCSAEMTTQLFFKNIVKLWGVPKSIVSDR
        +Y + C  CQ  K +  K  G L+P+    RPWES+S+DFIT LP+      + V+VDRFSK A  VP +K  +AE T ++F + ++  +G PK I++D 
Subjt:  QYTKTCLICQQEKVKRTKIVGLLEPLLVPSRPWESVSLDFITHLPKVGESETILVIVDRFSKYATFVPTSKMCSAEMTTQLFFKNIVKLWGVPKSIVSDR

Query:  DGRFTVTFWMELFRLLGSNLNISSSYHPQTDGQTERFNSILEEYLR
        D  FT   W +        +  S  Y PQTDGQTER N  +E+ LR
Subjt:  DGRFTVTFWMELFRLLGSNLNISSSYHPQTDGQTERFNSILEEYLR

Q9UR07 Transposon Tf2-11 polyprotein4.9e-2741.1Show/hide
Query:  QYTKTCLICQQEKVKRTKIVGLLEPLLVPSRPWESVSLDFITHLPKVGESETILVIVDRFSKYATFVPTSKMCSAEMTTQLFFKNIVKLWGVPKSIVSDR
        +Y + C  CQ  K +  K  G L+P+    RPWES+S+DFIT LP+      + V+VDRFSK A  VP +K  +AE T ++F + ++  +G PK I++D 
Subjt:  QYTKTCLICQQEKVKRTKIVGLLEPLLVPSRPWESVSLDFITHLPKVGESETILVIVDRFSKYATFVPTSKMCSAEMTTQLFFKNIVKLWGVPKSIVSDR

Query:  DGRFTVTFWMELFRLLGSNLNISSSYHPQTDGQTERFNSILEEYLR
        D  FT   W +        +  S  Y PQTDGQTER N  +E+ LR
Subjt:  DGRFTVTFWMELFRLLGSNLNISSSYHPQTDGQTERFNSILEEYLR

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAATACACCAAGACGTGCCTCATCTGCCAACAAGAGAAAGTCAAGAGAACTAAAATTGTGGGCTTACTGGAGCCCCTTCTAGTGCCATCAAGGCCTTGGGAG
AGCGTATCCCTAGACTTCATCACCCACCTGCCCAAGGTAGGAGAATCCGAAACTATCCTTGTTATTGTCGACAGATTCTCCAAATACGCAACCTTTGTCCCAACT
TCGAAGATGTGTTCCGCAGAGATGACAACACAGCTATTCTTCAAGAATATAGTGAAACTATGGGGTGTCCCCAAAAGCATCGTGAGTGATAGAGATGGAAGATTC
ACTGTAACCTTCTGGATGGAACTCTTTCGGCTACTTGGCTCCAACTTGAACATATCCTCAAGTTACCACCCGCAGACCGACGGTCAGACAGAACGCTTCAATAGT
ATATTGGAGGAATACCTTCGCCACTTCATTGATGCTGGATACAGATGCTTGATGTGGCCCAATTTTGTTTCAACTACCAAAAGAGCACGACTGCAGGGAAGGCTC
ATTTTGAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGCAATACACCAAGACGTGCCTCATCTGCCAACAAGAGAAAGTCAAGAGAACTAAAATTGTGGGCTTACTGGAGCCCCTTCTAGTGCCATCAAGGCCTTGGGAG
AGCGTATCCCTAGACTTCATCACCCACCTGCCCAAGGTAGGAGAATCCGAAACTATCCTTGTTATTGTCGACAGATTCTCCAAATACGCAACCTTTGTCCCAACT
TCGAAGATGTGTTCCGCAGAGATGACAACACAGCTATTCTTCAAGAATATAGTGAAACTATGGGGTGTCCCCAAAAGCATCGTGAGTGATAGAGATGGAAGATTC
ACTGTAACCTTCTGGATGGAACTCTTTCGGCTACTTGGCTCCAACTTGAACATATCCTCAAGTTACCACCCGCAGACCGACGGTCAGACAGAACGCTTCAATAGT
ATATTGGAGGAATACCTTCGCCACTTCATTGATGCTGGATACAGATGCTTGATGTGGCCCAATTTTGTTTCAACTACCAAAAGAGCACGACTGCAGGGAAGGCTC
ATTTTGAAATAG
Protein sequenceShow/hide protein sequence
MQYTKTCLICQQEKVKRTKIVGLLEPLLVPSRPWESVSLDFITHLPKVGESETILVIVDRFSKYATFVPTSKMCSAEMTTQLFFKNIVKLWGVPKSIVSDRDGRF
TVTFWMELFRLLGSNLNISSSYHPQTDGQTERFNSILEEYLRHFIDAGYRCLMWPNFVSTTKRARLQGRLILK