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Moc04g23730 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc04g23730
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr4:17136040..17137805
RNA-Seq ExpressionMoc04g23730
SyntenyMoc04g23730
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043652.1 uncharacterized protein E6C27_scaffold320G001000 [Cucumis melo var. makuwa]1.4e-0744.55Show/hide
Query:  EGNISDGRMREGQR-AMERMIRTMEEISKRMHRLEIQNQAQERIPPPPPPRVTDDHPLYRENESEEGGSDQLEDDQVTLLASHRRGDRRAGHRLDRGRGR
        E    + ++RE Q+  + RMI  ME ++ R+ R EI+N+A+ER+PPP  P +  +H    +N+ E  GSD L+DDQVTLL       RR GH + R RGR
Subjt:  EGNISDGRMREGQR-AMERMIRTMEEISKRMHRLEIQNQAQERIPPPPPPRVTDDHPLYRENESEEGGSDQLEDDQVTLLASHRRGDRRAGHRLDRGRGR

Query:  GR-HNNYQRR
        GR + N QRR
Subjt:  GR-HNNYQRR

KAA0047036.1 uncharacterized protein E6C27_scaffold829G00200 [Cucumis melo var. makuwa]2.4e-0445.98Show/hide
Query:  MEEISKRMHRLEIQNQAQERIPPPPPPRVTDDHPLYRENESEEGGSDQLEDDQVTLLASHRRGDRRAGHRLDRGRGRGR-HNNYQRR
        ME ++ R+ RLEI+N+A+ER+PPP  P +  +H     N+ E  G D L+DDQVTLL       RR GH + R RG G+ + N QRR
Subjt:  MEEISKRMHRLEIQNQAQERIPPPPPPRVTDDHPLYRENESEEGGSDQLEDDQVTLLASHRRGDRRAGHRLDRGRGRGR-HNNYQRR

TYK09709.1 uncharacterized protein E5676_scaffold447G001250 [Cucumis melo var. makuwa]8.8e-0748.35Show/hide
Query:  MIRTMEEISKRMHRLEIQNQAQERIPPPPPPRVTDDHPLYRENESEEGGSDQLEDDQVTLLASHRRGDRRAGHRLDRGRGRGR-HNNYQRR
        MI  ME ++ R+ R EI+N+A+ER+PPP  P +  +H    +N+ E  GSD L+DDQVTLL       RR GH + R RGRGR + N QRR
Subjt:  MIRTMEEISKRMHRLEIQNQAQERIPPPPPPRVTDDHPLYRENESEEGGSDQLEDDQVTLLASHRRGDRRAGHRLDRGRGRGR-HNNYQRR

XP_022152309.1 uncharacterized protein LOC111020057 [Momordica charantia]2.5e-1485.71Show/hide
Query:  DDHPLYRENESEEGGSDQLEDDQVTLLASHRRGDRRAGHRLDRGRGRGRHNNYQRR
        DD+ LYRENESEEG SDQLEDDQVTLLA HRRGDRR GHRLDRGRGRG  +NYQRR
Subjt:  DDHPLYRENESEEGGSDQLEDDQVTLLASHRRGDRRAGHRLDRGRGRGRHNNYQRR

XP_022157414.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111024115 [Momordica charantia]1.6e-1655.65Show/hide
Query:  MANEEHEGNISDGRMREG-QRAMERMIRTMEEISKRMHRLEIQNQAQERIPPPPPPRVTDDHPLYRENESEEGGSDQLEDDQVTLLASHRRGDRRAGHRL
        MAN   EGNISD R RE  +  +ERMIR+ME +++R+ RLE QNQA+ R+PPPP  RV D      E+E E  GSD  EDDQ T+LA  R GD   G  L
Subjt:  MANEEHEGNISDGRMREG-QRAMERMIRTMEEISKRMHRLEIQNQAQERIPPPPPPRVTDDHPLYRENESEEGGSDQLEDDQVTLLASHRRGDRRAGHRL

Query:  DRGRGRGR-HNNYQR
        DRGRGRGR ++N+QR
Subjt:  DRGRGRGR-HNNYQR

TrEMBL top hitse value%identityAlignment
A0A5A7TK52 Retrotrans_gag domain-containing protein6.6e-0844.55Show/hide
Query:  EGNISDGRMREGQR-AMERMIRTMEEISKRMHRLEIQNQAQERIPPPPPPRVTDDHPLYRENESEEGGSDQLEDDQVTLLASHRRGDRRAGHRLDRGRGR
        E    + ++RE Q+  + RMI  ME ++ R+ R EI+N+A+ER+PPP  P +  +H    +N+ E  GSD L+DDQVTLL       RR GH + R RGR
Subjt:  EGNISDGRMREGQR-AMERMIRTMEEISKRMHRLEIQNQAQERIPPPPPPRVTDDHPLYRENESEEGGSDQLEDDQVTLLASHRRGDRRAGHRLDRGRGR

Query:  GR-HNNYQRR
        GR + N QRR
Subjt:  GR-HNNYQRR

A0A5A7TYI0 Uncharacterized protein1.2e-0445.98Show/hide
Query:  MEEISKRMHRLEIQNQAQERIPPPPPPRVTDDHPLYRENESEEGGSDQLEDDQVTLLASHRRGDRRAGHRLDRGRGRGR-HNNYQRR
        ME ++ R+ RLEI+N+A+ER+PPP  P +  +H     N+ E  G D L+DDQVTLL       RR GH + R RG G+ + N QRR
Subjt:  MEEISKRMHRLEIQNQAQERIPPPPPPRVTDDHPLYRENESEEGGSDQLEDDQVTLLASHRRGDRRAGHRLDRGRGRGR-HNNYQRR

A0A5D3CHG3 Retrotrans_gag domain-containing protein4.2e-0748.35Show/hide
Query:  MIRTMEEISKRMHRLEIQNQAQERIPPPPPPRVTDDHPLYRENESEEGGSDQLEDDQVTLLASHRRGDRRAGHRLDRGRGRGR-HNNYQRR
        MI  ME ++ R+ R EI+N+A+ER+PPP  P +  +H    +N+ E  GSD L+DDQVTLL       RR GH + R RGRGR + N QRR
Subjt:  MIRTMEEISKRMHRLEIQNQAQERIPPPPPPRVTDDHPLYRENESEEGGSDQLEDDQVTLLASHRRGDRRAGHRLDRGRGRGR-HNNYQRR

A0A6J1DFN2 uncharacterized protein LOC1110200571.2e-1485.71Show/hide
Query:  DDHPLYRENESEEGGSDQLEDDQVTLLASHRRGDRRAGHRLDRGRGRGRHNNYQRR
        DD+ LYRENESEEG SDQLEDDQVTLLA HRRGDRR GHRLDRGRGRG  +NYQRR
Subjt:  DDHPLYRENESEEGGSDQLEDDQVTLLASHRRGDRRAGHRLDRGRGRGRHNNYQRR

A0A6J1DWE9 LOW QUALITY PROTEIN: uncharacterized protein LOC1110241157.7e-1755.65Show/hide
Query:  MANEEHEGNISDGRMREG-QRAMERMIRTMEEISKRMHRLEIQNQAQERIPPPPPPRVTDDHPLYRENESEEGGSDQLEDDQVTLLASHRRGDRRAGHRL
        MAN   EGNISD R RE  +  +ERMIR+ME +++R+ RLE QNQA+ R+PPPP  RV D      E+E E  GSD  EDDQ T+LA  R GD   G  L
Subjt:  MANEEHEGNISDGRMREG-QRAMERMIRTMEEISKRMHRLEIQNQAQERIPPPPPPRVTDDHPLYRENESEEGGSDQLEDDQVTLLASHRRGDRRAGHRL

Query:  DRGRGRGR-HNNYQR
        DRGRGRGR ++N+QR
Subjt:  DRGRGRGR-HNNYQR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTGATCACAGAGTTCACGGGGAAAGCCTACAAGAGAAGCAAGCTCAAATCTACTTAAATGAAGCTTATGCTCAAAGTCAACCCAATCATGAGCCAATTATT
ATACCACAAGGTCCAATCACAATAGCTAGAGCTAAAAGACTACAAGAATGCATGGCAAATGAAGAACATGAAGGTAACATATCAGATGGTAGGATGAGAGAGGGA
CAAAGAGCTATGGAGCGAATGATTCGTACCATGGAAGAGATATCGAAACGAATGCACAGGTTGGAGATTCAAAACCAAGCGCAGGAGAGGATACCACCACCACCA
CCACCACGTGTTACGGATGACCATCCTTTATATCGAGAGAATGAATCTGAGGAAGGTGGGTCTGATCAACTAGAGGATGACCAAGTTACCTTGTTAGCCTCGCAT
AGAAGGGGAGATAGACGTGCTGGACATCGCTTGGATAGAGGGAGAGGTCGTGGAAGACATAATAATTATCAGAGAAGAGGCTCAAGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGTGATCACAGAGTTCACGGGGAAAGCCTACAAGAGAAGCAAGCTCAAATCTACTTAAATGAAGCTTATGCTCAAAGTCAACCCAATCATGAGCCAATTATT
ATACCACAAGGTCCAATCACAATAGCTAGAGCTAAAAGACTACAAGAATGCATGGCAAATGAAGAACATGAAGGTAACATATCAGATGGTAGGATGAGAGAGGGA
CAAAGAGCTATGGAGCGAATGATTCGTACCATGGAAGAGATATCGAAACGAATGCACAGGTTGGAGATTCAAAACCAAGCGCAGGAGAGGATACCACCACCACCA
CCACCACGTGTTACGGATGACCATCCTTTATATCGAGAGAATGAATCTGAGGAAGGTGGGTCTGATCAACTAGAGGATGACCAAGTTACCTTGTTAGCCTCGCAT
AGAAGGGGAGATAGACGTGCTGGACATCGCTTGGATAGAGGGAGAGGTCGTGGAAGACATAATAATTATCAGAGAAGAGGCTCAAGTTGA
Protein sequenceShow/hide protein sequence
MSDHRVHGESLQEKQAQIYLNEAYAQSQPNHEPIIIPQGPITIARAKRLQECMANEEHEGNISDGRMREGQRAMERMIRTMEEISKRMHRLEIQNQAQERIPPPP
PPRVTDDHPLYRENESEEGGSDQLEDDQVTLLASHRRGDRRAGHRLDRGRGRGRHNNYQRRGSS