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Moc04g23770 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc04g23770
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr4:17167888..17168698
RNA-Seq ExpressionMoc04g23770
SyntenyMoc04g23770
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_012436090.1 PREDICTED: uncharacterized protein LOC105762750 [Gossypium raimondii]8.4e-3077.55Show/hide
Query:  SEEYETLAIGLSIAKEMKIKKFKVVGDSNLAVRQTDGTFALKEISLAPYQFLVLKLCYEIDVELTHVNRSTNRHADSLATLASNFVATISDEKFVRRI
        S EYE LAIGLSIAKEMKI K KVVGDSNL VRQTDGTFALKEISLAPYQ LV KLC EIDVELTHVNR TNRHADSLATLAS       +++ V +I
Subjt:  SEEYETLAIGLSIAKEMKIKKFKVVGDSNLAVRQTDGTFALKEISLAPYQFLVLKLCYEIDVELTHVNRSTNRHADSLATLASNFVATISDEKFVRRI

XP_023908129.1 uncharacterized protein LOC112019817 [Quercus suber]4.6e-1251.76Show/hide
Query:  EYETLAIGLSIAKEMKIKKFKVVGDSNLAVRQTDGTFALKEISLAPYQFLVLKLCYEID-VELTHVNRSTNRHADSLATLASNFV
        EYE    GLSIA+EM+IK+ KV GDSNL V Q  G F+LKE SLAPY+ +  +L    D + + H  RS NRHAD++ TL S  +
Subjt:  EYETLAIGLSIAKEMKIKKFKVVGDSNLAVRQTDGTFALKEISLAPYQFLVLKLCYEID-VELTHVNRSTNRHADSLATLASNFV

XP_024195529.1 uncharacterized protein LOC112198618 [Rosa chinensis]9.4e-1347.73Show/hide
Query:  EEYETLAIGLSIAKEMKIKKFKVVGDSNLAVRQTDGTFALKEISLAPYQFLVLKLCYEID-VELTHVNRSTNRHADSLATLASNFVAT
        EEYE    GL+ A E+++K+ +V+GDSNL + Q  G FA+KE++LAPY+ L  KL  + + + L H+  STNR+AD+LATL S    T
Subjt:  EEYETLAIGLSIAKEMKIKKFKVVGDSNLAVRQTDGTFALKEISLAPYQFLVLKLCYEID-VELTHVNRSTNRHADSLATLASNFVAT

XP_026433560.1 uncharacterized protein LOC113330999 [Papaver somniferum]9.4e-1352.38Show/hide
Query:  SEEYETLAIGLSIAKEMKIKKFKVVGDSNLAVRQTDGTFALKEISLAPYQFLVLKLC-YEIDVELTHVNRSTNRHADSLATLAS
        S EYE   IGLS++K+    + +++GDS L V Q +G +ALKE++LAPY+    KL  Y +DV +THV  S NRHAD LATLAS
Subjt:  SEEYETLAIGLSIAKEMKIKKFKVVGDSNLAVRQTDGTFALKEISLAPYQFLVLKLC-YEIDVELTHVNRSTNRHADSLATLAS

XP_026451457.1 uncharacterized protein LOC113351736 [Papaver somniferum]3.6e-1241.96Show/hide
Query:  SEEYETLAIGLSIAKEMKIKKFKVVGDSNLAVRQTDGTFALKEISLAPYQFLVLKLC-YEIDVELTHVNRSTNRHADSLATLASNFVATISDEKFVRRIL
        S EYE   IGLS+AK     + +V GDS L V Q +G ++LKE++LAPY     KL  Y  DV +TH+ R+ N+HAD LATLAS     + +E  + R  
Subjt:  SEEYETLAIGLSIAKEMKIKKFKVVGDSNLAVRQTDGTFALKEISLAPYQFLVLKLC-YEIDVELTHVNRSTNRHADSLATLASNFVATISDEKFVRRIL

Query:  SEEKHFVAFNSD
        +    ++A + D
Subjt:  SEEKHFVAFNSD

TrEMBL top hitse value%identityAlignment
A0A2N9FL36 Reverse transcriptase6.5e-1240.5Show/hide
Query:  AATVEGVRSAVILGKTESE-----------------EYETLAIGLSIAKEMKIKKFKVVGDSNLAVRQTDGTFALKEISLAPYQFLVLKL-CYEIDVELT
        ++TV G R+ V+L + E +                 EYE    GL++A+E++IK+ KV GDSNL V Q  G FAL E SLAPY+ +  +L  Y  ++ + 
Subjt:  AATVEGVRSAVILGKTESE-----------------EYETLAIGLSIAKEMKIKKFKVVGDSNLAVRQTDGTFALKEISLAPYQFLVLKL-CYEIDVELT

Query:  HVNRSTNRHADSLATLASNFV
        H  RS NRHAD+L TL S  +
Subjt:  HVNRSTNRHADSLATLASNFV

A0A2N9G4R0 Reverse transcriptase6.5e-1249.51Show/hide
Query:  SEEYETLAIGLSIAKEMKIKKFKVVGDSNLAVRQTDGTFALKEISLAPYQFLVLKLCYEIDV-ELTHVNRSTNRHADSLATLASN--FVATISDEKFVRR
        + EYE     L+IA EM IK  KV+GDSNL V QT G FALKE SLAPY+ L  +L  +    E+TH  RS NR+AD+LATL S   F    +D    +R
Subjt:  SEEYETLAIGLSIAKEMKIKKFKVVGDSNLAVRQTDGTFALKEISLAPYQFLVLKLCYEIDV-ELTHVNRSTNRHADSLATLASN--FVATISDEKFVRR

Query:  ILS
         +S
Subjt:  ILS

A0A2N9G9H4 Ribonuclease H8.6e-1239.5Show/hide
Query:  EYETLAIGLSIAKEMKIKKFKVVGDSNLAVRQTDGTFALKEISLAPYQFLVLKL-CYEIDVELTHVNRSTNRHADSLATLASN--FVATISDEKFVRRIL
        EYE    GL++A+E++IK+ KV GDSNL V Q  G FAL+E SLAPY+ +  +L  Y  ++ + +  RS NRHAD+LATL S   F    S ++ ++++L
Subjt:  EYETLAIGLSIAKEMKIKKFKVVGDSNLAVRQTDGTFALKEISLAPYQFLVLKL-CYEIDVELTHVNRSTNRHADSLATLASN--FVATISDEKFVRRIL

Query:  ------SEEKHFVAFNSDE
               +E+ +  F++ +
Subjt:  ------SEEKHFVAFNSDE

A0A2N9GSF5 RNase H domain-containing protein5.0e-1254.88Show/hide
Query:  EYETLAIGLSIAKEMKIKKFKVVGDSNLAVRQTDGTFALKEISLAPYQFLVLKLCYEIDV-ELTHVNRSTNRHADSLATLAS
        EYE   IGL+I  EM IK  +V+GDSNL + QT G F+LKE SLAPY  L  KL  + D  E++H  R  NR+AD+LATL S
Subjt:  EYETLAIGLSIAKEMKIKKFKVVGDSNLAVRQTDGTFALKEISLAPYQFLVLKLCYEIDV-ELTHVNRSTNRHADSLATLAS

A0A6P5RGV5 uncharacterized protein LOC1107462913.8e-1247.06Show/hide
Query:  EYETLAIGLSIAKEMKIKKFKVVGDSNLAVRQTDGTFALKEISLAPYQFLVLKLCYEI-DVELTHVNRSTNRHADSLATLASNFV
        EYE   +G+SIA+EM ++K K++GDSNL + Q  G FA+KE +LAPY+ +  K+      V + H+ R TNR+AD+LATL S  +
Subjt:  EYETLAIGLSIAKEMKIKKFKVVGDSNLAVRQTDGTFALKEISLAPYQFLVLKLCYEI-DVELTHVNRSTNRHADSLATLASNFV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAGCAAACGAAGGCGACGCACGACAGGAGCGGCGGCGGCGACAGTAGAGGGGGTTCGGTCCGCAGTGATTTTGGGGAAAACAGAAAGTGAAGAATATGAG
ACCTTAGCGATAGGGTTGTCTATCGCTAAAGAAATGAAGATCAAGAAGTTCAAAGTGGTTGGTGACTCTAATTTGGCGGTTCGACAGACAGATGGGACATTCGCA
CTGAAGGAGATTTCCCTAGCACCTTATCAGTTCCTTGTGCTGAAGCTGTGTTATGAAATTGATGTGGAATTAACCCATGTCAACAGGTCTACCAATCGACATGCT
GATTCTTTGGCCACTCTAGCTTCAAATTTCGTCGCTACAATAAGCGACGAAAAGTTTGTGCGTCGCATTTTAAGCGAAGAAAAACATTTCGTCGCATTTAATAGC
GACGAAAGTCATTTGTGTCGCTTATAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGAGCAAACGAAGGCGACGCACGACAGGAGCGGCGGCGGCGACAGTAGAGGGGGTTCGGTCCGCAGTGATTTTGGGGAAAACAGAAAGTGAAGAATATGAG
ACCTTAGCGATAGGGTTGTCTATCGCTAAAGAAATGAAGATCAAGAAGTTCAAAGTGGTTGGTGACTCTAATTTGGCGGTTCGACAGACAGATGGGACATTCGCA
CTGAAGGAGATTTCCCTAGCACCTTATCAGTTCCTTGTGCTGAAGCTGTGTTATGAAATTGATGTGGAATTAACCCATGTCAACAGGTCTACCAATCGACATGCT
GATTCTTTGGCCACTCTAGCTTCAAATTTCGTCGCTACAATAAGCGACGAAAAGTTTGTGCGTCGCATTTTAAGCGAAGAAAAACATTTCGTCGCATTTAATAGC
GACGAAAGTCATTTGTGTCGCTTATAA
Protein sequenceShow/hide protein sequence
MKSKRRRRTTGAAAATVEGVRSAVILGKTESEEYETLAIGLSIAKEMKIKKFKVVGDSNLAVRQTDGTFALKEISLAPYQFLVLKLCYEIDVELTHVNRSTNRHA
DSLATLASNFVATISDEKFVRRILSEEKHFVAFNSDESHLCRL