CuGenDBv2

Gene ID	Moc04g24000
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	chr4:17350345..17355131
RNA-Seq Expression	Moc04g24000
Synteny	Moc04g24000
Gene Ontology terms	GO:0044237 - cellular metabolic process (biological process) GO:0016020 - membrane (cellular component) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR001878 - Zinc finger, CCHC-type IPR036875 - Zinc finger, CCHC-type superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

RVW41523.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]

3.4e-25

49.31

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Query:  NVASLVTNETAVIDLIKALENRYEKPSANNKVYLVRRFFNIQMEENTSVNSHINEITKLINQLASVNITFSDEMNVIQLLTSLLESWETMKIGVSNSLGD
        +VA  V  E    DL+KAL   YEKPSANNKV+L+++ FN++M EN SV  H+NE   + NQL+SV I F DE+  + +L SL  SWE M++ VSNS G 
Subjt:  NVASLVTNETAVIDLIKALENRYEKPSANNKVYLVRRFFNIQMEENTSVNSHINEITKLINQLASVNITFSDEMNVIQLLTSLLESWETMKIGVSNSLGD

Query:  KSLKFSEICDAAIAEEIHRNGSGKESTSVQGSTLAIET-GKEKV
        + LK+++I D  +AEEI R  +G+  TS  GS L +ET G+E+V
Subjt:  KSLKFSEICDAAIAEEIHRNGSGKESTSVQGSTLAIET-GKEKV

RVW60263.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]

3.4e-25

49.31

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Query:  NVASLVTNETAVIDLIKALENRYEKPSANNKVYLVRRFFNIQMEENTSVNSHINEITKLINQLASVNITFSDEMNVIQLLTSLLESWETMKIGVSNSLGD
        +VA  V  E    DL+KAL   YEKPSANNKV+L+++ FN++M EN SV  H+NE   + NQL+SV I F DE+  + +L SL  SWE M++ VSNS G 
Subjt:  NVASLVTNETAVIDLIKALENRYEKPSANNKVYLVRRFFNIQMEENTSVNSHINEITKLINQLASVNITFSDEMNVIQLLTSLLESWETMKIGVSNSLGD

Query:  KSLKFSEICDAAIAEEIHRNGSGKESTSVQGSTLAIET-GKEKV
        + LK+++I D  +AEEI R  +G+  TS  GS L +ET G+E+V
Subjt:  KSLKFSEICDAAIAEEIHRNGSGKESTSVQGSTLAIET-GKEKV

RVW80348.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]

1.2e-25

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Query:  NVASLVTNETAVIDLIKALENRYEKPSANNKVYLVRRFFNIQMEENTSVNSHINEITKLINQLASVNITFSDEMNVIQLLTSLLESWETMKIGVSNSLGD
        +VA  V  E    DL+KAL   YEKPSANNKV+L+++ FN++M EN SV  H+NE   + NQL+SV I F DE+  + +L SL  SWE M++ VSNS G 
Subjt:  NVASLVTNETAVIDLIKALENRYEKPSANNKVYLVRRFFNIQMEENTSVNSHINEITKLINQLASVNITFSDEMNVIQLLTSLLESWETMKIGVSNSLGD

Query:  KSLKFSEICDAAIAEEIHRNGSGKESTSVQGSTLAIET
        + LK+++I D  +AEEIHR  +G+  TS  GS L +ET
Subjt:  KSLKFSEICDAAIAEEIHRNGSGKESTSVQGSTLAIET

RVX04617.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]

3.1e-26

51.09

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Query:  VASLVTNETAVIDLIKALENRYEKPSANNKVYLVRRFFNIQMEENTSVNSHINEITKLINQLASVNITFSDEMNVIQLLTSLLESWETMKIGVSNSLGDK
        VA  V  E   IDL+KAL  +YEKPSANNKV+L+++ FN++M EN SV  H+NE   + NQL+S+ I F DE+  + +L SL  SWE M++ VSNS G +
Subjt:  VASLVTNETAVIDLIKALENRYEKPSANNKVYLVRRFFNIQMEENTSVNSHINEITKLINQLASVNITFSDEMNVIQLLTSLLESWETMKIGVSNSLGDK

Query:  SLKFSEICDAAIAEEIHRNGSGKESTSVQGSTLAIET
         LK+++I D  +AEEIHR  +G+  TS  GSTL +ET
Subjt:  SLKFSEICDAAIAEEIHRNGSGKESTSVQGSTLAIET

XP_022152413.1 uncharacterized protein LOC111020149 [Momordica charantia]

5.1e-29

77.42

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Query:  IVNKIDLQHSEDIEELLHLAVKIEEQNQRRAKRYVKSNPKTASSKVESKILESKPKAGYEKEESSKSKTQPEIPKTRTSEIKCFKCHGVGHIS
        IV+K+DLQH +D+EELLHL VKIEEQNQRRAKRYVKS PKT  SK ++K LESKPK  YE+ ESSKSK QPE  KTRTS+IKCFKCHGVGHIS
Subjt:  IVNKIDLQHSEDIEELLHLAVKIEEQNQRRAKRYVKSNPKTASSKVESKILESKPKAGYEKEESSKSKTQPEIPKTRTSEIKCFKCHGVGHIS

TrEMBL top hits

e value

%identity

Alignment

A0A438E1E8 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.7e-25

49.31

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Query:  NVASLVTNETAVIDLIKALENRYEKPSANNKVYLVRRFFNIQMEENTSVNSHINEITKLINQLASVNITFSDEMNVIQLLTSLLESWETMKIGVSNSLGD
        +VA  V  E    DL+KAL   YEKPSANNKV+L+++ FN++M EN SV  H+NE   + NQL+SV I F DE+  + +L SL  SWE M++ VSNS G 
Subjt:  NVASLVTNETAVIDLIKALENRYEKPSANNKVYLVRRFFNIQMEENTSVNSHINEITKLINQLASVNITFSDEMNVIQLLTSLLESWETMKIGVSNSLGD

Query:  KSLKFSEICDAAIAEEIHRNGSGKESTSVQGSTLAIET-GKEKV
        + LK+++I D  +AEEI R  +G+  TS  GS L +ET G+E+V
Subjt:  KSLKFSEICDAAIAEEIHRNGSGKESTSVQGSTLAIET-GKEKV

A0A438H767 Retrovirus-related Pol polyprotein from transposon TNT 1-94

5.7e-26

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Query:  NVASLVTNETAVIDLIKALENRYEKPSANNKVYLVRRFFNIQMEENTSVNSHINEITKLINQLASVNITFSDEMNVIQLLTSLLESWETMKIGVSNSLGD
        +VA  V  E    DL+KAL   YEKPSANNKV+L+++ FN++M EN SV  H+NE   + NQL+SV I F DE+  + +L SL  SWE M++ VSNS G 
Subjt:  NVASLVTNETAVIDLIKALENRYEKPSANNKVYLVRRFFNIQMEENTSVNSHINEITKLINQLASVNITFSDEMNVIQLLTSLLESWETMKIGVSNSLGD

Query:  KSLKFSEICDAAIAEEIHRNGSGKESTSVQGSTLAIET
        + LK+++I D  +AEEIHR  +G+  TS  GS L +ET
Subjt:  KSLKFSEICDAAIAEEIHRNGSGKESTSVQGSTLAIET

A0A438J6N6 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.5e-26

51.09

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Query:  VASLVTNETAVIDLIKALENRYEKPSANNKVYLVRRFFNIQMEENTSVNSHINEITKLINQLASVNITFSDEMNVIQLLTSLLESWETMKIGVSNSLGDK
        VA  V  E   IDL+KAL  +YEKPSANNKV+L+++ FN++M EN SV  H+NE   + NQL+S+ I F DE+  + +L SL  SWE M++ VSNS G +
Subjt:  VASLVTNETAVIDLIKALENRYEKPSANNKVYLVRRFFNIQMEENTSVNSHINEITKLINQLASVNITFSDEMNVIQLLTSLLESWETMKIGVSNSLGDK

Query:  SLKFSEICDAAIAEEIHRNGSGKESTSVQGSTLAIET
         LK+++I D  +AEEIHR  +G+  TS  GSTL +ET
Subjt:  SLKFSEICDAAIAEEIHRNGSGKESTSVQGSTLAIET

A0A6J1DET1 uncharacterized protein LOC111020149

2.5e-29

77.42

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Query:  IVNKIDLQHSEDIEELLHLAVKIEEQNQRRAKRYVKSNPKTASSKVESKILESKPKAGYEKEESSKSKTQPEIPKTRTSEIKCFKCHGVGHIS
        IV+K+DLQH +D+EELLHL VKIEEQNQRRAKRYVKS PKT  SK ++K LESKPK  YE+ ESSKSK QPE  KTRTS+IKCFKCHGVGHIS
Subjt:  IVNKIDLQHSEDIEELLHLAVKIEEQNQRRAKRYVKSNPKTASSKVESKILESKPKAGYEKEESSKSKTQPEIPKTRTSEIKCFKCHGVGHIS

A0A7N2MMH0 Uncharacterized protein

5.7e-26

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Query:  NVASLVTNETAVIDLIKALENRYEKPSANNKVYLVRRFFNIQMEENTSVNSHINEITKLINQLASVNITFSDEMNVIQLLTSLLESWETMKIGVSNSLGD
        +VA  V  E    DL+KAL   YEKPSANNKV+L+++ FN++M EN SV  H+NE   + NQL+SV I F DE++ + +L SLL SWE M++ VSNS G 
Subjt:  NVASLVTNETAVIDLIKALENRYEKPSANNKVYLVRRFFNIQMEENTSVNSHINEITKLINQLASVNITFSDEMNVIQLLTSLLESWETMKIGVSNSLGD

Query:  KSLKFSEICDAAIAEEIHRNGSGKESTSVQGSTLAIET
        + LK+++I D  +AEEI R  +G+  TS  GS L +ET
Subjt:  KSLKFSEICDAAIAEEIHRNGSGKESTSVQGSTLAIET

SwissProt top hits

e value

%identity

Alignment

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.6e-04

25.86

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Query:  NVASLVTNETAVIDLIKALENRYEKPSANNKVYLVRRFFNIQMEENTSVNSHINEITKLINQLASVNITFSDEMNVIQLLTSLLESWETMKIGVSNSLGD
        +V + + +E     +   LE+ Y   +  NK+YL ++ + + M E T+  SH+N    LI QLA++ +   +E   I LL SL  S++ +   + +  G 
Subjt:  NVASLVTNETAVIDLIKALENRYEKPSANNKVYLVRRFFNIQMEENTSVNSHINEITKLINQLASVNITFSDEMNVIQLLTSLLESWETMKIGVSNSLGD

Query:  KSLKFSEICDAAIAEE
         +++  ++  A +  E
Subjt:  KSLKFSEICDAAIAEE

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGAATGTGGCAAGTCTCGTAACAAACGAAACAGCAGTAATAGATCTGATTAAAGCACTGGAGAATAGGTACGAGAAACCCTCAGCTAATAATAAGGTATATCTC
GTAAGGAGATTCTTTAACATTCAAATGGAAGAGAATACTTCTGTCAATTCCCACATAAATGAGATCACAAAATTAATTAATCAATTGGCATCAGTTAATATTACT
TTTAGTGATGAAATGAATGTTATTCAACTGTTAACATCTTTACTTGAAAGTTGGGAAACGATGAAGATAGGAGTGTCCAATTCGTTAGGGGACAAATCTTTGAAA
TTTTCAGAAATTTGTGATGCGGCAATTGCTGAAGAAATTCACAGAAATGGAAGTGGAAAAGAATCTACTTCTGTACAAGGCTCAACATTGGCTATCGAAACAGGT
AAAGAGAAGGTTGCGTTCGATGACAGTGGATGTAAGTTGCAGATGGTGTCCAAAGAGGTAGGACTGAGCCAGCAACAAAGACAACCAGAACAGATCATGAGGATC
TGCCATCAATTCAGAAACAACAATTGGGAAGTCAAAGAAACAAGAATATGTTCTTTAGGTTGTCAGGGATTATCCCTAGTTGCCAGACGAATGAGTGAATTGATG
AAGTCGCGTCAGCGAACAGTTGCATCAGAGAAGATGGACCCAGTATATGTTGATGTAAAGAATGGAGTTTCAATTTTGGCGGCAGACTTGAATAAAGTTGTCAAG
TCATCAGCGGAAAGAGAAGCCTTGAAGATTTTTTCAAGAAGATCAGAAGTTGTTGTAGTAGAAGCCTTGGAGTTTTCCAAGATTATCAGAAACTGCTTTAAACCT
GCTTTTTCGCAGAAGACTGGACGTAGTCCCAAGACAGGGGTGAACCAGTATAATCCCTGTGGCATAGTCAACAAAATTGATTTGCAACACTCTGAAGACATAGAG
GAACTTCTACATCTCGCCGTCAAAATAGAGGAGCAAAACCAAAGGAGAGCTAAAAGGTATGTCAAATCTAACCCTAAGACTGCTAGTAGTAAAGTGGAAAGCAAA
ATCCTAGAGTCAAAACCAAAGGCTGGTTATGAAAAGGAAGAGTCATCCAAGTCCAAGACCCAACCCGAAATTCCTAAGACTAGAACTAGTGAGATTAAATGTTTT
AAGTGTCATGGAGTAGGCCACATAAGCCGAAATTGCCCTAATGAAAGAGTCATGATACTTAAGGAGGGAGAGCTAGTCATGGATGATGAGAAAGAGAATTTAGAG
GTTGAGGAGAAAAATGAGGAAAGTAGTCAAGAAGATGAAGTAGAAGAGGATTCCAAGGATATAGCCTTATTGGCTAGGAAGAACCTCAATACTTCGTGTAGTGGG
CCTTGTTTTAAGGATGGAATGGACTCTTTTCTCCTCTTGGGCTTGGGTATGTTGGGCTTTTGGGTTGGGTTGATTTTAAAACAAAAAGAAAGAAAAACAAAAGGG
GAAAACAAAATAAGCCCTAAGCTCCATCTTCTTTTACCCCTCTCCCTTGCCCATTCGCCCCCTTCGTTTTCCGGCGACCCAGCCCCCTCCGACGATGGCGTCTTC
AGATTCGGCGACACCCAGCAGGCCGTGGCCCTTCTCCGGCGTTCCTTGTGCGTGCGACGTCGCGGCAGTCCTCCGCGAACTGTAAGTCCAACGAGTAGCGGCGGC
GCGACCTTCCCCTTGGCGGCGTTCGAGCAGCGGCGGCCGGACACCCGACGCTCCAGCGGCTGCGAACAAGTACAGCGGCGAGCACGGCAGCGTTCTTCATCCCCG
ACGTTTCGACGGTCTGCAGCAGCGGCGGCGCCCCCGGCGATCTGCAAGAACCAGCGCGGCCTCCTCCTCGCGGCGGCGCACGGCGAACGGCGTACAGCAGCGGAA
CGGCGGCAGAGTTTGAACGTTACAGCAGTGTTTTGGACGTTTGGCGGCGACCCACATCCGTTCGAAGCTCGATTTAGGCTACCCACACCTTGGCGAGTTAGATCT
AGGGTGAGGCCGACGCAAAACTTAAGGGCGCGATTTGTTACTCTTGTTTATGTAGTTTTGTATGCCTAG

mRNA sequence

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Protein sequence

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MNVASLVTNETAVIDLIKALENRYEKPSANNKVYLVRRFFNIQMEENTSVNSHINEITKLINQLASVNITFSDEMNVIQLLTSLLESWETMKIGVSNSLGDKSLK
FSEICDAAIAEEIHRNGSGKESTSVQGSTLAIETGKEKVAFDDSGCKLQMVSKEVGLSQQQRQPEQIMRICHQFRNNNWEVKETRICSLGCQGLSLVARRMSELM
KSRQRTVASEKMDPVYVDVKNGVSILAADLNKVVKSSAEREALKIFSRRSEVVVVEALEFSKIIRNCFKPAFSQKTGRSPKTGVNQYNPCGIVNKIDLQHSEDIE
ELLHLAVKIEEQNQRRAKRYVKSNPKTASSKVESKILESKPKAGYEKEESSKSKTQPEIPKTRTSEIKCFKCHGVGHISRNCPNERVMILKEGELVMDDEKENLE
VEEKNEESSQEDEVEEDSKDIALLARKNLNTSCSGPCFKDGMDSFLLLGLGMLGFWVGLILKQKERKTKGENKISPKLHLLLPLSLAHSPPSFSGDPAPSDDGVF
RFGDTQQAVALLRRSLCVRRRGSPPRTVSPTSSGGATFPLAAFEQRRPDTRRSSGCEQVQRRARQRSSSPTFRRSAAAAAPPAICKNQRGLLLAAAHGERRTAAE
RRQSLNVTAVFWTFGGDPHPFEARFRLPTPWRVRSRVRPTQNLRARFVTLVYVVLYA

Moc04g24000 (gene) of Bitter gourd (OHB3-1) v2 genome