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Moc04g24120 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc04g24120
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionIntegrase
Genome locationchr4:17423971..17424898
RNA-Seq ExpressionMoc04g24120
SyntenyMoc04g24120
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025311.1 integrase [Cucumis melo var. makuwa]1.7e-3158.65Show/hide
Query:  SSNNMLQPQLPHFEGKNYRQGSQQMKVLYGSQELWDIVDRGYSEPER------------------KEKVKMLRLYALRAEFYTITMKEAETVEELFNRVL
        S+ NMLQPQLP F GKN+ Q S QMKVLYGSQELWDIV+RGY+E E                   ++KV+M+RL ALR EF  I MKE ET+EE FNR+L
Subjt:  SSNNMLQPQLPHFEGKNYRQGSQQMKVLYGSQELWDIVDRGYSEPER------------------KEKVKMLRLYALRAEFYTITMKEAETVEELFNRVL

Query:  SIVNQLRSNGDAIEDQRVIEKMLRIMTRRYEHI
         IVN LRSNG+ + DQRV+EK+LR M R++EHI
Subjt:  SIVNQLRSNGDAIEDQRVIEKMLRIMTRRYEHI

KAA0037654.1 integrase [Cucumis melo var. makuwa]1.6e-2943.26Show/hide
Query:  MLQPQLPHFEGKNYRQGSQQMKVLYGSQELWDIVDRGYSEPER------------------KEKVKMLRLYALRAEFYTITMKEAETVEELFNRVLSIVN
        MLQPQLP F GKN+ Q   QMKVLYGSQELWDIV RGY+E E                   ++KVKM+RL ALR+EF  I MKE ET+EELFN +L IVN
Subjt:  MLQPQLPHFEGKNYRQGSQQMKVLYGSQELWDIVDRGYSEPER------------------KEKVKMLRLYALRAEFYTITMKEAETVEELFNRVLSIVN

Query:  QLRSNGDAIEDQRVIEKMLRIMTRRYEH----------IKKLFICKRLLEGDLMEEEVDALVKEMEGLMTSKVLSQREEIIKLLQTEEKEEVPAEEEVEV
         LRSNG+ + DQRV+EK+L+ M R++E+          +  L I   ++  + +    D  V+E   +   ++L   ++ +  L+ EE E+  A  E + 
Subjt:  QLRSNGDAIEDQRVIEKMLRIMTRRYEH----------IKKLFICKRLLEGDLMEEEVDALVKEMEGLMTSKVLSQREEIIKLLQTEEKEEVPAEEEVEV

Query:  EVVKIFLTYNASIVD
         VV I LT+NA I +
Subjt:  EVVKIFLTYNASIVD

TYK07358.1 integrase [Cucumis melo var. makuwa]7.6e-3258.65Show/hide
Query:  SSNNMLQPQLPHFEGKNYRQGSQQMKVLYGSQELWDIVDRGYSEPER------------------KEKVKMLRLYALRAEFYTITMKEAETVEELFNRVL
        S+ NMLQPQLP F GKN+ Q S QMKVLYGSQELWDIV+RGY+E E                   ++KV+M+RL ALR+EF  I MKE ET+EE FNR+L
Subjt:  SSNNMLQPQLPHFEGKNYRQGSQQMKVLYGSQELWDIVDRGYSEPER------------------KEKVKMLRLYALRAEFYTITMKEAETVEELFNRVL

Query:  SIVNQLRSNGDAIEDQRVIEKMLRIMTRRYEHI
         IVN LRSNG+ + DQRV+EK+LR M R++EHI
Subjt:  SIVNQLRSNGDAIEDQRVIEKMLRIMTRRYEHI

XP_008462665.1 PREDICTED: uncharacterized protein LOC103500968 [Cucumis melo]7.6e-3258.65Show/hide
Query:  SSNNMLQPQLPHFEGKNYRQGSQQMKVLYGSQELWDIVDRGYSEPER------------------KEKVKMLRLYALRAEFYTITMKEAETVEELFNRVL
        S+ NMLQPQLP F GKN+ Q S QMKVLYGSQELWDIV+RGY+E E                   ++KV+M+RL ALR+EF  I MKE ET+EE FNR+L
Subjt:  SSNNMLQPQLPHFEGKNYRQGSQQMKVLYGSQELWDIVDRGYSEPER------------------KEKVKMLRLYALRAEFYTITMKEAETVEELFNRVL

Query:  SIVNQLRSNGDAIEDQRVIEKMLRIMTRRYEHI
         IVN LRSNG+ + DQRV+EK+LR M R++EHI
Subjt:  SIVNQLRSNGDAIEDQRVIEKMLRIMTRRYEHI

XP_038877452.1 uncharacterized protein LOC120069734 [Benincasa hispida]1.7e-3950.66Show/hide
Query:  MLQPQLPHFEGKNYRQGSQQMKVLYGSQELWDIVDRGYSEPERKEKVKMLRLYALRAEFYTITMKEAETVEELFNRVLSIVNQLRSNGDAIEDQRVIEKM
        MLQPQLP FEGKNYR+  QQMKVLYGSQ+LWDIVDRGYSEP+ ++                    +AET+E+ FNRVL IVNQLRSNG+ IEDQRV+EK+
Subjt:  MLQPQLPHFEGKNYRQGSQQMKVLYGSQELWDIVDRGYSEPERKEKVKMLRLYALRAEFYTITMKEAETVEELFNRVLSIVNQLRSNGDAIEDQRVIEKM

Query:  LRIMTRRYEHI-------KKL-FICKRLLEGDLMEEEV-------DALVKEMEGLMTSK--------------------VLSQREEIIKLLQTEEKEEVP
        LRIMTRRYEHI       K L  +    L G L   E+       + L K      +S+                    V SQR E I LLQ EE EEV 
Subjt:  LRIMTRRYEHI-------KKL-FICKRLLEGDLMEEEV-------DALVKEMEGLMTSK--------------------VLSQREEIIKLLQTEEKEEVP

Query:  AEEEVEVEVVKIFLTYNASIVDATDTFKQ
         E+E EV VV+IFLTYN SIVD  D FKQ
Subjt:  AEEEVEVEVVKIFLTYNASIVDATDTFKQ

TrEMBL top hitse value%identityAlignment
A0A1S3CHI3 uncharacterized protein LOC1035009683.7e-3258.65Show/hide
Query:  SSNNMLQPQLPHFEGKNYRQGSQQMKVLYGSQELWDIVDRGYSEPER------------------KEKVKMLRLYALRAEFYTITMKEAETVEELFNRVL
        S+ NMLQPQLP F GKN+ Q S QMKVLYGSQELWDIV+RGY+E E                   ++KV+M+RL ALR+EF  I MKE ET+EE FNR+L
Subjt:  SSNNMLQPQLPHFEGKNYRQGSQQMKVLYGSQELWDIVDRGYSEPER------------------KEKVKMLRLYALRAEFYTITMKEAETVEELFNRVL

Query:  SIVNQLRSNGDAIEDQRVIEKMLRIMTRRYEHI
         IVN LRSNG+ + DQRV+EK+LR M R++EHI
Subjt:  SIVNQLRSNGDAIEDQRVIEKMLRIMTRRYEHI

A0A5A7SM37 Integrase8.2e-3258.65Show/hide
Query:  SSNNMLQPQLPHFEGKNYRQGSQQMKVLYGSQELWDIVDRGYSEPER------------------KEKVKMLRLYALRAEFYTITMKEAETVEELFNRVL
        S+ NMLQPQLP F GKN+ Q S QMKVLYGSQELWDIV+RGY+E E                   ++KV+M+RL ALR EF  I MKE ET+EE FNR+L
Subjt:  SSNNMLQPQLPHFEGKNYRQGSQQMKVLYGSQELWDIVDRGYSEPER------------------KEKVKMLRLYALRAEFYTITMKEAETVEELFNRVL

Query:  SIVNQLRSNGDAIEDQRVIEKMLRIMTRRYEHI
         IVN LRSNG+ + DQRV+EK+LR M R++EHI
Subjt:  SIVNQLRSNGDAIEDQRVIEKMLRIMTRRYEHI

A0A5A7UQL9 Integrase1.3e-2953.06Show/hide
Query:  SSNNMLQPQLPHFEGKNYRQGSQQMKVLYGSQELWDIVDRGYSEPER--------------------------------KEKVKMLRLYALRAEFYTITM
        S+ NMLQPQLP F  KN+ Q S QMKVLYGSQELWDIV+RGY+E E                                 K+KVKM+RL AL +EF  I M
Subjt:  SSNNMLQPQLPHFEGKNYRQGSQQMKVLYGSQELWDIVDRGYSEPER--------------------------------KEKVKMLRLYALRAEFYTITM

Query:  KEAETVEELFNRVLSIVNQLRSNGDAIEDQRVIEKMLRIMTRRYEHI
        KE ET+EE FNR+L IVN LRSNG+ + DQRV+EK+LR M R++EHI
Subjt:  KEAETVEELFNRVLSIVNQLRSNGDAIEDQRVIEKMLRIMTRRYEHI

A0A5D3C874 Integrase3.7e-3258.65Show/hide
Query:  SSNNMLQPQLPHFEGKNYRQGSQQMKVLYGSQELWDIVDRGYSEPER------------------KEKVKMLRLYALRAEFYTITMKEAETVEELFNRVL
        S+ NMLQPQLP F GKN+ Q S QMKVLYGSQELWDIV+RGY+E E                   ++KV+M+RL ALR+EF  I MKE ET+EE FNR+L
Subjt:  SSNNMLQPQLPHFEGKNYRQGSQQMKVLYGSQELWDIVDRGYSEPER------------------KEKVKMLRLYALRAEFYTITMKEAETVEELFNRVL

Query:  SIVNQLRSNGDAIEDQRVIEKMLRIMTRRYEHI
         IVN LRSNG+ + DQRV+EK+LR M R++EHI
Subjt:  SIVNQLRSNGDAIEDQRVIEKMLRIMTRRYEHI

A0A5D3DHS9 Integrase7.7e-3043.26Show/hide
Query:  MLQPQLPHFEGKNYRQGSQQMKVLYGSQELWDIVDRGYSEPER------------------KEKVKMLRLYALRAEFYTITMKEAETVEELFNRVLSIVN
        MLQPQLP F GKN+ Q   QMKVLYGSQELWDIV RGY+E E                   ++KVKM+RL ALR+EF  I MKE ET+EELFN +L IVN
Subjt:  MLQPQLPHFEGKNYRQGSQQMKVLYGSQELWDIVDRGYSEPER------------------KEKVKMLRLYALRAEFYTITMKEAETVEELFNRVLSIVN

Query:  QLRSNGDAIEDQRVIEKMLRIMTRRYEH----------IKKLFICKRLLEGDLMEEEVDALVKEMEGLMTSKVLSQREEIIKLLQTEEKEEVPAEEEVEV
         LRSNG+ + DQRV+EK+L+ M R++E+          +  L I   ++  + +    D  V+E   +   ++L   ++ +  L+ EE E+  A  E + 
Subjt:  QLRSNGDAIEDQRVIEKMLRIMTRRYEH----------IKKLFICKRLLEGDLMEEEVDALVKEMEGLMTSKVLSQREEIIKLLQTEEKEEVPAEEEVEV

Query:  EVVKIFLTYNASIVD
         VV I LT+NA I +
Subjt:  EVVKIFLTYNASIVD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G48720.1 unknown protein9.4e-0434.43Show/hide
Query:  MSSNNMLQPQLPHFEGKNYRQGSQQMKVLYGSQELWDIVDRGYSEPERKEKVKMLRLYALR
        M+SNN +  Q+P     NY   S +MK + G+ ++W+IV++G+ EPE +  +   +   LR
Subjt:  MSSNNMLQPQLPHFEGKNYRQGSQQMKVLYGSQELWDIVDRGYSEPERKEKVKMLRLYALR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCATCCAACAACATGTTACAGCCTCAACTTCCGCATTTTGAAGGAAAGAACTATAGACAGGGGAGTCAACAAATGAAGGTTCTTTATGGATCTCAAGAGCTT
TGGGATATTGTTGATAGAGGATATTCGGAGCCAGAAAGAAAGGAAAAGGTAAAAATGTTAAGATTGTATGCACTTCGAGCTGAATTTTATACCATTACAATGAAA
GAAGCTGAAACTGTTGAAGAACTTTTCAACCGTGTTCTCTCTATTGTTAATCAATTGAGATCAAATGGAGATGCAATTGAAGATCAAAGAGTGATAGAAAAGATG
CTTAGAATCATGACTAGAAGATATGAGCACATTAAGAAGCTGTTCATATGCAAACGTCTTTTAGAGGGAGATTTAATGGAAGAAGAGGTGGACGCATTGGTCAAG
GAAATGGAAGGTCTAATGACTTCAAAAGTTTTGAGTCAGAGAGAAGAGATAATCAAACTTCTTCAAACAGAGGAAAAGGAAGAAGTTCCAGCAGAGGAAGAAGTA
GAGGTGGAGGTTGTGAAGATTTTTCTCACATACAATGCTTCAATTGTGGATGCTACGGACACTTTCAAGCAGATTGTTGGTCTAAAAAGATCAATTCTAATCAGG
CAGAGACCACTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCATCCAACAACATGTTACAGCCTCAACTTCCGCATTTTGAAGGAAAGAACTATAGACAGGGGAGTCAACAAATGAAGGTTCTTTATGGATCTCAAGAGCTT
TGGGATATTGTTGATAGAGGATATTCGGAGCCAGAAAGAAAGGAAAAGGTAAAAATGTTAAGATTGTATGCACTTCGAGCTGAATTTTATACCATTACAATGAAA
GAAGCTGAAACTGTTGAAGAACTTTTCAACCGTGTTCTCTCTATTGTTAATCAATTGAGATCAAATGGAGATGCAATTGAAGATCAAAGAGTGATAGAAAAGATG
CTTAGAATCATGACTAGAAGATATGAGCACATTAAGAAGCTGTTCATATGCAAACGTCTTTTAGAGGGAGATTTAATGGAAGAAGAGGTGGACGCATTGGTCAAG
GAAATGGAAGGTCTAATGACTTCAAAAGTTTTGAGTCAGAGAGAAGAGATAATCAAACTTCTTCAAACAGAGGAAAAGGAAGAAGTTCCAGCAGAGGAAGAAGTA
GAGGTGGAGGTTGTGAAGATTTTTCTCACATACAATGCTTCAATTGTGGATGCTACGGACACTTTCAAGCAGATTGTTGGTCTAAAAAGATCAATTCTAATCAGG
CAGAGACCACTCTGA
Protein sequenceShow/hide protein sequence
MSSNNMLQPQLPHFEGKNYRQGSQQMKVLYGSQELWDIVDRGYSEPERKEKVKMLRLYALRAEFYTITMKEAETVEELFNRVLSIVNQLRSNGDAIEDQRVIEKM
LRIMTRRYEHIKKLFICKRLLEGDLMEEEVDALVKEMEGLMTSKVLSQREEIIKLLQTEEKEEVPAEEEVEVEVVKIFLTYNASIVDATDTFKQIVGLKRSILIR
QRPL