CuGenDBv2

Gene ID	Moc04g24290
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Gag/pol protein
Genome location	chr4:17506919..17510134
RNA-Seq Expression	Moc04g24290
Synteny	Moc04g24290
Gene Ontology terms	GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008234 - cysteine-type peptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR001878 - Zinc finger, CCHC-type IPR036875 - Zinc finger, CCHC-type superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0035879.1 gag/pol protein [Cucumis melo var. makuwa]

1.3e-98

72.26

Show/hide

Query:  RFVLQEDCPQAPAPNATVAVRNAYDRWV----KAKVYILASISDVLAKKHEDTVTAKEIMDSLQSMFGQPSSQARHEALKFIYNSRMKEGSSVREHVLNL
        RFVL E+CPQ PA NAT  VR  Y+RW     KA+ YILAS+S+VLAKKHE  +TA+EIMDSLQ MFGQ S Q +H+ALK+IYN+RM EG+SVREHVLN+
Subjt:  RFVLQEDCPQAPAPNATVAVRNAYDRWV----KAKVYILASISDVLAKKHEDTVTAKEIMDSLQSMFGQPSSQARHEALKFIYNSRMKEGSSVREHVLNL

Query:  MIHFNVAESNGAVIDEQSQVSFILESLPKSFLPFCSNAVMNKLEYTLTTLLNELQIYQSLMKCKGQEGEANVATS-KRFNRGSSSGTRSAPSSSGSKTFK
        M+HFNVAE NGAVIDE SQVSFILESLP+SFL F SNAVMNK+ YTLTTLLNELQ ++SLMK KGQ+GEANVATS ++F+RGS+SGT+S PSSSG+K +K
Subjt:  MIHFNVAESNGAVIDEQSQVSFILESLPKSFLPFCSNAVMNKLEYTLTTLLNELQIYQSLMKCKGQEGEANVATS-KRFNRGSSSGTRSAPSSSGSKTFK

Query:  KKKAAGKGSKPNSAVAAQKGKVKVAEKGKCFHCNMDGHWKRNCTKYLAEKKKANEGKYDLLVLETCLVENDDSA
        KKK  G+G+K N A A    K K A KG CFHCN +GHWKRNC KYLAEKKKA +GKYDLLVLETCLVENDDSA
Subjt:  KKKAAGKGSKPNSAVAAQKGKVKVAEKGKCFHCNMDGHWKRNCTKYLAEKKKANEGKYDLLVLETCLVENDDSA

KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]

1.3e-98

72.26

Show/hide

Query:  RFVLQEDCPQAPAPNATVAVRNAYDRWV----KAKVYILASISDVLAKKHEDTVTAKEIMDSLQSMFGQPSSQARHEALKFIYNSRMKEGSSVREHVLNL
        RFVL E+CPQ PA NAT  VR  Y+RW     KA+ YILAS+S+VLAKKHE  +TA+EIMDSLQ MFGQ S Q +H+ALK+IYN+RM EG+SVREHVLN+
Subjt:  RFVLQEDCPQAPAPNATVAVRNAYDRWV----KAKVYILASISDVLAKKHEDTVTAKEIMDSLQSMFGQPSSQARHEALKFIYNSRMKEGSSVREHVLNL

Query:  MIHFNVAESNGAVIDEQSQVSFILESLPKSFLPFCSNAVMNKLEYTLTTLLNELQIYQSLMKCKGQEGEANVATS-KRFNRGSSSGTRSAPSSSGSKTFK
        M+HFNVAE NGAVIDE SQVSFILESLP+SFL F SNAVMNK+ YTLTTLLNELQ ++SLMK KGQ+GEANVATS ++F+RGS+SGT+S PSSSG+K +K
Subjt:  MIHFNVAESNGAVIDEQSQVSFILESLPKSFLPFCSNAVMNKLEYTLTTLLNELQIYQSLMKCKGQEGEANVATS-KRFNRGSSSGTRSAPSSSGSKTFK

Query:  KKKAAGKGSKPNSAVAAQKGKVKVAEKGKCFHCNMDGHWKRNCTKYLAEKKKANEGKYDLLVLETCLVENDDSA
        KKK  G+G+K N A A    K K A KG CFHCN +GHWKRNC KYLAEKKKA +GKYDLLVLETCLVENDDSA
Subjt:  KKKAAGKGSKPNSAVAAQKGKVKVAEKGKCFHCNMDGHWKRNCTKYLAEKKKANEGKYDLLVLETCLVENDDSA

KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]

1.3e-98

72.26

Show/hide

Query:  RFVLQEDCPQAPAPNATVAVRNAYDRWV----KAKVYILASISDVLAKKHEDTVTAKEIMDSLQSMFGQPSSQARHEALKFIYNSRMKEGSSVREHVLNL
        RFVL E+CPQ PA NAT  VR  Y+RW     KA+ YILAS+S+VLAKKHE  +TA+EIMDSLQ MFGQ S Q +H+ALK+IYN+RM EG+SVREHVLN+
Subjt:  RFVLQEDCPQAPAPNATVAVRNAYDRWV----KAKVYILASISDVLAKKHEDTVTAKEIMDSLQSMFGQPSSQARHEALKFIYNSRMKEGSSVREHVLNL

Query:  MIHFNVAESNGAVIDEQSQVSFILESLPKSFLPFCSNAVMNKLEYTLTTLLNELQIYQSLMKCKGQEGEANVATS-KRFNRGSSSGTRSAPSSSGSKTFK
        M+HFNVAE NGAVIDE SQVSFILESLP+SFL F SNAVMNK+ YTLTTLLNELQ ++SLMK KGQ+GEANVATS ++F+RGS+SGT+S PSSSG+K +K
Subjt:  MIHFNVAESNGAVIDEQSQVSFILESLPKSFLPFCSNAVMNKLEYTLTTLLNELQIYQSLMKCKGQEGEANVATS-KRFNRGSSSGTRSAPSSSGSKTFK

Query:  KKKAAGKGSKPNSAVAAQKGKVKVAEKGKCFHCNMDGHWKRNCTKYLAEKKKANEGKYDLLVLETCLVENDDSA
        KKK  G+G+K N A A    K K A KG CFHCN +GHWKRNC KYLAEKKKA +GKYDLLVLETCLVENDDSA
Subjt:  KKKAAGKGSKPNSAVAAQKGKVKVAEKGKCFHCNMDGHWKRNCTKYLAEKKKANEGKYDLLVLETCLVENDDSA

KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa]

1.3e-98

72.26

Show/hide

Query:  RFVLQEDCPQAPAPNATVAVRNAYDRWV----KAKVYILASISDVLAKKHEDTVTAKEIMDSLQSMFGQPSSQARHEALKFIYNSRMKEGSSVREHVLNL
        RFVL E+CPQ PA NAT  VR  Y+RW     KA+ YILAS+S+VLAKKHE  +TA+EIMDSLQ MFGQ S Q +H+ALK+IYN+RM EG+SVREHVLN+
Subjt:  RFVLQEDCPQAPAPNATVAVRNAYDRWV----KAKVYILASISDVLAKKHEDTVTAKEIMDSLQSMFGQPSSQARHEALKFIYNSRMKEGSSVREHVLNL

Query:  MIHFNVAESNGAVIDEQSQVSFILESLPKSFLPFCSNAVMNKLEYTLTTLLNELQIYQSLMKCKGQEGEANVATS-KRFNRGSSSGTRSAPSSSGSKTFK
        M+HFNVAE NGAVIDE SQVSFILESLP+SFL F SNAVMNK+ YTLTTLLNELQ ++SLMK KGQ+GEANVATS ++F+RGS+SGT+S PSSSG+K +K
Subjt:  MIHFNVAESNGAVIDEQSQVSFILESLPKSFLPFCSNAVMNKLEYTLTTLLNELQIYQSLMKCKGQEGEANVATS-KRFNRGSSSGTRSAPSSSGSKTFK

Query:  KKKAAGKGSKPNSAVAAQKGKVKVAEKGKCFHCNMDGHWKRNCTKYLAEKKKANEGKYDLLVLETCLVENDDSA
        KKK  G+G+K N A A    K K A KG CFHCN +GHWKRNC KYLAEKKKA +GKYDLLVLETCLVENDDSA
Subjt:  KKKAAGKGSKPNSAVAAQKGKVKVAEKGKCFHCNMDGHWKRNCTKYLAEKKKANEGKYDLLVLETCLVENDDSA

TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]

1.3e-98

72.26

Show/hide

Query:  RFVLQEDCPQAPAPNATVAVRNAYDRWV----KAKVYILASISDVLAKKHEDTVTAKEIMDSLQSMFGQPSSQARHEALKFIYNSRMKEGSSVREHVLNL
        RFVL E+CPQ PA NAT  VR  Y+RW     KA+ YILAS+S+VLAKKHE  +TA+EIMDSLQ MFGQ S Q +H+ALK+IYN+RM EG+SVREHVLN+
Subjt:  RFVLQEDCPQAPAPNATVAVRNAYDRWV----KAKVYILASISDVLAKKHEDTVTAKEIMDSLQSMFGQPSSQARHEALKFIYNSRMKEGSSVREHVLNL

Query:  MIHFNVAESNGAVIDEQSQVSFILESLPKSFLPFCSNAVMNKLEYTLTTLLNELQIYQSLMKCKGQEGEANVATS-KRFNRGSSSGTRSAPSSSGSKTFK
        M+HFNVAE NGAVIDE SQVSFILESLP+SFL F SNAVMNK+ YTLTTLLNELQ ++SLMK KGQ+GEANVATS ++F+RGS+SGT+S PSSSG+K +K
Subjt:  MIHFNVAESNGAVIDEQSQVSFILESLPKSFLPFCSNAVMNKLEYTLTTLLNELQIYQSLMKCKGQEGEANVATS-KRFNRGSSSGTRSAPSSSGSKTFK

Query:  KKKAAGKGSKPNSAVAAQKGKVKVAEKGKCFHCNMDGHWKRNCTKYLAEKKKANEGKYDLLVLETCLVENDDSA
        KKK  G+G+K N A A    K K A KG CFHCN +GHWKRNC KYLAEKKKA +GKYDLLVLETCLVENDDSA
Subjt:  KKKAAGKGSKPNSAVAAQKGKVKVAEKGKCFHCNMDGHWKRNCTKYLAEKKKANEGKYDLLVLETCLVENDDSA

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SMH8 Gag/pol protein

6.1e-99

72.26

Show/hide

Query:  RFVLQEDCPQAPAPNATVAVRNAYDRWV----KAKVYILASISDVLAKKHEDTVTAKEIMDSLQSMFGQPSSQARHEALKFIYNSRMKEGSSVREHVLNL
        RFVL E+CPQ PA NAT  VR  Y+RW     KA+ YILAS+S+VLAKKHE  +TA+EIMDSLQ MFGQ S Q +H+ALK+IYN+RM EG+SVREHVLN+
Subjt:  RFVLQEDCPQAPAPNATVAVRNAYDRWV----KAKVYILASISDVLAKKHEDTVTAKEIMDSLQSMFGQPSSQARHEALKFIYNSRMKEGSSVREHVLNL

Query:  MIHFNVAESNGAVIDEQSQVSFILESLPKSFLPFCSNAVMNKLEYTLTTLLNELQIYQSLMKCKGQEGEANVATS-KRFNRGSSSGTRSAPSSSGSKTFK
        M+HFNVAE NGAVIDE SQVSFILESLP+SFL F SNAVMNK+ YTLTTLLNELQ ++SLMK KGQ+GEANVATS ++F+RGS+SGT+S PSSSG+K +K
Subjt:  MIHFNVAESNGAVIDEQSQVSFILESLPKSFLPFCSNAVMNKLEYTLTTLLNELQIYQSLMKCKGQEGEANVATS-KRFNRGSSSGTRSAPSSSGSKTFK

Query:  KKKAAGKGSKPNSAVAAQKGKVKVAEKGKCFHCNMDGHWKRNCTKYLAEKKKANEGKYDLLVLETCLVENDDSA
        KKK  G+G+K N A A    K K A KG CFHCN +GHWKRNC KYLAEKKKA +GKYDLLVLETCLVENDDSA
Subjt:  KKKAAGKGSKPNSAVAAQKGKVKVAEKGKCFHCNMDGHWKRNCTKYLAEKKKANEGKYDLLVLETCLVENDDSA

A0A5A7TU93 Gag/pol protein

6.1e-99

72.26

Show/hide

Query:  RFVLQEDCPQAPAPNATVAVRNAYDRWV----KAKVYILASISDVLAKKHEDTVTAKEIMDSLQSMFGQPSSQARHEALKFIYNSRMKEGSSVREHVLNL
        RFVL E+CPQ PA NAT  VR  Y+RW     KA+ YILAS+S+VLAKKHE  +TA+EIMDSLQ MFGQ S Q +H+ALK+IYN+RM EG+SVREHVLN+
Subjt:  RFVLQEDCPQAPAPNATVAVRNAYDRWV----KAKVYILASISDVLAKKHEDTVTAKEIMDSLQSMFGQPSSQARHEALKFIYNSRMKEGSSVREHVLNL

Query:  MIHFNVAESNGAVIDEQSQVSFILESLPKSFLPFCSNAVMNKLEYTLTTLLNELQIYQSLMKCKGQEGEANVATS-KRFNRGSSSGTRSAPSSSGSKTFK
        M+HFNVAE NGAVIDE SQVSFILESLP+SFL F SNAVMNK+ YTLTTLLNELQ ++SLMK KGQ+GEANVATS ++F+RGS+SGT+S PSSSG+K +K
Subjt:  MIHFNVAESNGAVIDEQSQVSFILESLPKSFLPFCSNAVMNKLEYTLTTLLNELQIYQSLMKCKGQEGEANVATS-KRFNRGSSSGTRSAPSSSGSKTFK

Query:  KKKAAGKGSKPNSAVAAQKGKVKVAEKGKCFHCNMDGHWKRNCTKYLAEKKKANEGKYDLLVLETCLVENDDSA
        KKK  G+G+K N A A    K K A KG CFHCN +GHWKRNC KYLAEKKKA +GKYDLLVLETCLVENDDSA
Subjt:  KKKAAGKGSKPNSAVAAQKGKVKVAEKGKCFHCNMDGHWKRNCTKYLAEKKKANEGKYDLLVLETCLVENDDSA

A0A5A7TWB9 Gag/pol protein

6.1e-99

72.26

Show/hide

Query:  RFVLQEDCPQAPAPNATVAVRNAYDRWV----KAKVYILASISDVLAKKHEDTVTAKEIMDSLQSMFGQPSSQARHEALKFIYNSRMKEGSSVREHVLNL
        RFVL E+CPQ PA NAT  VR  Y+RW     KA+ YILAS+S+VLAKKHE  +TA+EIMDSLQ MFGQ S Q +H+ALK+IYN+RM EG+SVREHVLN+
Subjt:  RFVLQEDCPQAPAPNATVAVRNAYDRWV----KAKVYILASISDVLAKKHEDTVTAKEIMDSLQSMFGQPSSQARHEALKFIYNSRMKEGSSVREHVLNL

Query:  MIHFNVAESNGAVIDEQSQVSFILESLPKSFLPFCSNAVMNKLEYTLTTLLNELQIYQSLMKCKGQEGEANVATS-KRFNRGSSSGTRSAPSSSGSKTFK
        M+HFNVAE NGAVIDE SQVSFILESLP+SFL F SNAVMNK+ YTLTTLLNELQ ++SLMK KGQ+GEANVATS ++F+RGS+SGT+S PSSSG+K +K
Subjt:  MIHFNVAESNGAVIDEQSQVSFILESLPKSFLPFCSNAVMNKLEYTLTTLLNELQIYQSLMKCKGQEGEANVATS-KRFNRGSSSGTRSAPSSSGSKTFK

Query:  KKKAAGKGSKPNSAVAAQKGKVKVAEKGKCFHCNMDGHWKRNCTKYLAEKKKANEGKYDLLVLETCLVENDDSA
        KKK  G+G+K N A A    K K A KG CFHCN +GHWKRNC KYLAEKKKA +GKYDLLVLETCLVENDDSA
Subjt:  KKKAAGKGSKPNSAVAAQKGKVKVAEKGKCFHCNMDGHWKRNCTKYLAEKKKANEGKYDLLVLETCLVENDDSA

A0A5D3CPJ6 Gag/pol protein

6.1e-99

72.26

Show/hide

Query:  RFVLQEDCPQAPAPNATVAVRNAYDRWV----KAKVYILASISDVLAKKHEDTVTAKEIMDSLQSMFGQPSSQARHEALKFIYNSRMKEGSSVREHVLNL
        RFVL E+CPQ PA NAT  VR  Y+RW     KA+ YILAS+S+VLAKKHE  +TA+EIMDSLQ MFGQ S Q +H+ALK+IYN+RM EG+SVREHVLN+
Subjt:  RFVLQEDCPQAPAPNATVAVRNAYDRWV----KAKVYILASISDVLAKKHEDTVTAKEIMDSLQSMFGQPSSQARHEALKFIYNSRMKEGSSVREHVLNL

Query:  MIHFNVAESNGAVIDEQSQVSFILESLPKSFLPFCSNAVMNKLEYTLTTLLNELQIYQSLMKCKGQEGEANVATS-KRFNRGSSSGTRSAPSSSGSKTFK
        M+HFNVAE NGAVIDE SQVSFILESLP+SFL F SNAVMNK+ YTLTTLLNELQ ++SLMK KGQ+GEANVATS ++F+RGS+SGT+S PSSSG+K +K
Subjt:  MIHFNVAESNGAVIDEQSQVSFILESLPKSFLPFCSNAVMNKLEYTLTTLLNELQIYQSLMKCKGQEGEANVATS-KRFNRGSSSGTRSAPSSSGSKTFK

Query:  KKKAAGKGSKPNSAVAAQKGKVKVAEKGKCFHCNMDGHWKRNCTKYLAEKKKANEGKYDLLVLETCLVENDDSA
        KKK  G+G+K N A A    K K A KG CFHCN +GHWKRNC KYLAEKKKA +GKYDLLVLETCLVENDDSA
Subjt:  KKKAAGKGSKPNSAVAAQKGKVKVAEKGKCFHCNMDGHWKRNCTKYLAEKKKANEGKYDLLVLETCLVENDDSA

A0A5D3CSZ6 Gag/pol protein

6.1e-99

72.26

Show/hide

Query:  RFVLQEDCPQAPAPNATVAVRNAYDRWV----KAKVYILASISDVLAKKHEDTVTAKEIMDSLQSMFGQPSSQARHEALKFIYNSRMKEGSSVREHVLNL
        RFVL E+CPQ PA NAT  VR  Y+RW     KA+ YILAS+S+VLAKKHE  +TA+EIMDSLQ MFGQ S Q +H+ALK+IYN+RM EG+SVREHVLN+
Subjt:  RFVLQEDCPQAPAPNATVAVRNAYDRWV----KAKVYILASISDVLAKKHEDTVTAKEIMDSLQSMFGQPSSQARHEALKFIYNSRMKEGSSVREHVLNL

Query:  MIHFNVAESNGAVIDEQSQVSFILESLPKSFLPFCSNAVMNKLEYTLTTLLNELQIYQSLMKCKGQEGEANVATS-KRFNRGSSSGTRSAPSSSGSKTFK
        M+HFNVAE NGAVIDE SQVSFILESLP+SFL F SNAVMNK+ YTLTTLLNELQ ++SLMK KGQ+GEANVATS ++F+RGS+SGT+S PSSSG+K +K
Subjt:  MIHFNVAESNGAVIDEQSQVSFILESLPKSFLPFCSNAVMNKLEYTLTTLLNELQIYQSLMKCKGQEGEANVATS-KRFNRGSSSGTRSAPSSSGSKTFK

Query:  KKKAAGKGSKPNSAVAAQKGKVKVAEKGKCFHCNMDGHWKRNCTKYLAEKKKANEGKYDLLVLETCLVENDDSA
        KKK  G+G+K N A A    K K A KG CFHCN +GHWKRNC KYLAEKKKA +GKYDLLVLETCLVENDDSA
Subjt:  KKKAAGKGSKPNSAVAAQKGKVKVAEKGKCFHCNMDGHWKRNCTKYLAEKKKANEGKYDLLVLETCLVENDDSA

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGAAAAAGAAGGTGTGCTACCACAAGCAGAATCCCGAGACCCAAGAGGATAGCAAGGAAGACGTAATGGTGGTGTTCGTGGGAAACCGTAGAAGAGAAGTTCTT
CAAAGTCGTTCGTGGCATCGGATTGGGCAAAAGTTGCAGAAAACAGAGAAGAAGACGAAGCAGACTGCGCAAACAGCCCCATGGCTCTGCGGGACAGCACATAGC
GCCACGGCACTGCACTGTAGCGTCGCGGCGCTGCCCTTAGGCACCGAGGTGCTTTCCCGGGTGCTTTCAACGCGGTTCCGAGGCTCCGGTTCGCGGTTCGTCTTA
CAAGAGGATTGTCCACAAGCTCCTGCGCCTAACGCCACTGTGGCGGTGCGCAACGCCTATGACAGGTGGGTCAAGGCCAAGGTCTACATCTTGGCGAGCATATCT
GATGTGCTTGCCAAGAAGCACGAGGACACGGTCACCGCTAAGGAGATCATGGACTCGCTGCAGAGCATGTTTGGACAACCGTCTTCACAGGCTCGACATGAAGCC
CTTAAGTTCATTTACAACTCCCGCATGAAGGAGGGCTCCTCAGTGCGAGAACACGTTCTCAACCTGATGATCCACTTCAACGTGGCTGAGTCAAACGGGGCCGTC
ATAGACGAGCAGAGTCAGGTCAGCTTTATTCTGGAATCTCTTCCGAAGAGTTTCCTTCCATTCTGCAGCAATGCGGTTATGAATAAGCTGGAGTACACTCTTACC
ACGCTCCTAAACGAGCTGCAGATCTACCAGTCTCTTATGAAATGTAAGGGACAAGAAGGGGAGGCAAATGTTGCCACCTCAAAGAGGTTCAACAGAGGATCATCC
TCTGGAACCAGGTCTGCGCCCTCTTCTTCTGGAAGTAAGACTTTTAAGAAGAAGAAAGCTGCTGGTAAGGGGTCTAAACCTAACTCAGCTGTTGCTGCCCAGAAA
GGCAAGGTCAAGGTTGCAGAGAAAGGAAAGTGTTTCCACTGCAATATGGACGGGCATTGGAAGCGCAACTGCACAAAGTACTTGGCCGAAAAGAAGAAAGCCAAC
GAAGGTAAATATGATTTACTTGTATTGGAAACATGTTTAGTGGAGAATGATGACTCCGCCTGA

mRNA sequence

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Protein sequence

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MKKKVCYHKQNPETQEDSKEDVMVVFVGNRRREVLQSRSWHRIGQKLQKTEKKTKQTAQTAPWLCGTAHSATALHCSVAALPLGTEVLSRVLSTRFRGSGSRFVL
QEDCPQAPAPNATVAVRNAYDRWVKAKVYILASISDVLAKKHEDTVTAKEIMDSLQSMFGQPSSQARHEALKFIYNSRMKEGSSVREHVLNLMIHFNVAESNGAV
IDEQSQVSFILESLPKSFLPFCSNAVMNKLEYTLTTLLNELQIYQSLMKCKGQEGEANVATSKRFNRGSSSGTRSAPSSSGSKTFKKKKAAGKGSKPNSAVAAQK
GKVKVAEKGKCFHCNMDGHWKRNCTKYLAEKKKANEGKYDLLVLETCLVENDDSA

Moc04g24290 (gene) of Bitter gourd (OHB3-1) v2 genome