; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc04g24430 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc04g24430
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr4:17642873..17643667
RNA-Seq ExpressionMoc04g24430
SyntenyMoc04g24430
Gene Ontology termsGO:0071897 - DNA biosynthetic process (biological process)
GO:0110165 - cellular anatomical structure (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0034061 - DNA polymerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EOX94372.1 Uncharacterized protein TCM_003960 [Theobroma cacao]3.4e-2153.92Show/hide
Query:  PSTAPINSLTLQNDPQTLLDNHSSRRQLKRESFHPIPISYTELLSQLFQGNLLAPIPVEPLQQSYPKWYDPQVHYDYHAGAVGHSTENCTSLKHKVQVLI
        P T P   +   N+P         +  L+R  F PIP+ YT LL QL +  LLA  P+EPL+ S+PKWYDP  H DYH G  GHSTENCT+LKHKVQVLI
Subjt:  PSTAPINSLTLQNDPQTLLDNHSSRRQLKRESFHPIPISYTELLSQLFQGNLLAPIPVEPLQQSYPKWYDPQVHYDYHAGAVGHSTENCTSLKHKVQVLI

Query:  KA
        KA
Subjt:  KA

KAA0054657.1 uncharacterized protein E6C27_scaffold24G004750 [Cucumis melo var. makuwa]6.8e-2240.51Show/hide
Query:  NLKGKEKENVTNGNAEGTAGKEYAQRWGEATEQLPMPLINKE-----------PHPETNRSSIKRKNKVQVVISKRKGKYQQGFVAYSPS-----TAPIN
        NL+  EK+NV          KEYAQRW E   Q+  PL +KE           P+ +    S+       + I +R     +    YSPS      +P  
Subjt:  NLKGKEKENVTNGNAEGTAGKEYAQRWGEATEQLPMPLINKE-----------PHPETNRSSIKRKNKVQVVISKRKGKYQQGFVAYSPS-----TAPIN

Query:  SLTLQNDPQTLLDNHSSRRQLKRESFHPIPISYTELLSQLFQGNLLAPIPVEPLQQSYPKWYDPQVHYDYHAGAVGHSTENCTSLKHKVQVLIKA
          T +N          +R   K+  F PIP+SYTELL QL + + +A +P EPLQ  YPKWYDP V  +YHAGAVGHSTENC  LK KVQ L+KA
Subjt:  SLTLQNDPQTLLDNHSSRRQLKRESFHPIPISYTELLSQLFQGNLLAPIPVEPLQQSYPKWYDPQVHYDYHAGAVGHSTENCTSLKHKVQVLIKA

XP_022153553.1 uncharacterized protein LOC111021029 [Momordica charantia]9.3e-8880.28Show/hide
Query:  MEILNVLKNIVTAGDISQPTNLVESHNNSSPRVDPPLCQSEEGFPQHSSSHDAQLSKKGQQIPTNCQVEFTFKDGQTSKVNYSDNLKGKEKENVTNGNAE
        M+ILNVLKNIVT G  SQP NLVE +NNSSPRVDPPLCQS+EGFPQHSSSHDAQLSKKGQQ+PTNCQVEFTFKD QT KVNYSDNLKG+EKENVT     
Subjt:  MEILNVLKNIVTAGDISQPTNLVESHNNSSPRVDPPLCQSEEGFPQHSSSHDAQLSKKGQQIPTNCQVEFTFKDGQTSKVNYSDNLKGKEKENVTNGNAE

Query:  GTAGKEYAQRWGEATEQLPMPLINKEPHPETNRSSIKRKNKVQVVISKRKGKYQQGFVAYSPSTAPINSLTLQNDPQTLLDNHSSRRQLKRESFHPIPIS
                QRWG+A EQLP+PLINKEPHP+ N+SSIKRKNKV  V+SKRK KYQQGFVAYSPST PINS+TLQ+DPQTL +NHSSRRQLKRESFH IP S
Subjt:  GTAGKEYAQRWGEATEQLPMPLINKEPHPETNRSSIKRKNKVQVVISKRKGKYQQGFVAYSPSTAPINSLTLQNDPQTLLDNHSSRRQLKRESFHPIPIS

Query:  YTELLSQLFQGNL
        YTELLSQLFQGNL
Subjt:  YTELLSQLFQGNL

XP_022155098.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica charantia]2.6e-2162.65Show/hide
Query:  DNHSSRRQLKRESFHPIPISYTELLSQLFQGNLLAPIPVEPLQQSYPKWYDPQVHYDYHAGAVGHSTENCTSLKHKVQVLIKA
        +N S+R+Q     F PIP++YTELL QLFQ N LAP+PV+P+Q  YP WYD     DYHAGA+GHSTENCT+LK++VQ LIKA
Subjt:  DNHSSRRQLKRESFHPIPISYTELLSQLFQGNLLAPIPVEPLQQSYPKWYDPQVHYDYHAGAVGHSTENCTSLKHKVQVLIKA

XP_022158986.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia]8.8e-2260.24Show/hide
Query:  DNHSSRRQLKRESFHPIPISYTELLSQLFQGNLLAPIPVEPLQQSYPKWYDPQVHYDYHAGAVGHSTENCTSLKHKVQVLIKA
        +  ++R   K+  F PIP++YTELL QLFQ N LAP+PV+P+Q  YP+WYD     DYHAGA+GHSTENCT+LK++VQ LIKA
Subjt:  DNHSSRRQLKRESFHPIPISYTELLSQLFQGNLLAPIPVEPLQQSYPKWYDPQVHYDYHAGAVGHSTENCTSLKHKVQVLIKA

TrEMBL top hitse value%identityAlignment
A0A061DPM2 Uncharacterized protein1.6e-2153.92Show/hide
Query:  PSTAPINSLTLQNDPQTLLDNHSSRRQLKRESFHPIPISYTELLSQLFQGNLLAPIPVEPLQQSYPKWYDPQVHYDYHAGAVGHSTENCTSLKHKVQVLI
        P T P   +   N+P         +  L+R  F PIP+ YT LL QL +  LLA  P+EPL+ S+PKWYDP  H DYH G  GHSTENCT+LKHKVQVLI
Subjt:  PSTAPINSLTLQNDPQTLLDNHSSRRQLKRESFHPIPISYTELLSQLFQGNLLAPIPVEPLQQSYPKWYDPQVHYDYHAGAVGHSTENCTSLKHKVQVLI

Query:  KA
        KA
Subjt:  KA

A0A5A7UJ84 Retrotrans_gag domain-containing protein3.3e-2240.51Show/hide
Query:  NLKGKEKENVTNGNAEGTAGKEYAQRWGEATEQLPMPLINKE-----------PHPETNRSSIKRKNKVQVVISKRKGKYQQGFVAYSPS-----TAPIN
        NL+  EK+NV          KEYAQRW E   Q+  PL +KE           P+ +    S+       + I +R     +    YSPS      +P  
Subjt:  NLKGKEKENVTNGNAEGTAGKEYAQRWGEATEQLPMPLINKE-----------PHPETNRSSIKRKNKVQVVISKRKGKYQQGFVAYSPS-----TAPIN

Query:  SLTLQNDPQTLLDNHSSRRQLKRESFHPIPISYTELLSQLFQGNLLAPIPVEPLQQSYPKWYDPQVHYDYHAGAVGHSTENCTSLKHKVQVLIKA
          T +N          +R   K+  F PIP+SYTELL QL + + +A +P EPLQ  YPKWYDP V  +YHAGAVGHSTENC  LK KVQ L+KA
Subjt:  SLTLQNDPQTLLDNHSSRRQLKRESFHPIPISYTELLSQLFQGNLLAPIPVEPLQQSYPKWYDPQVHYDYHAGAVGHSTENCTSLKHKVQVLIKA

A0A6J1DHS7 uncharacterized protein LOC1110210294.5e-8880.28Show/hide
Query:  MEILNVLKNIVTAGDISQPTNLVESHNNSSPRVDPPLCQSEEGFPQHSSSHDAQLSKKGQQIPTNCQVEFTFKDGQTSKVNYSDNLKGKEKENVTNGNAE
        M+ILNVLKNIVT G  SQP NLVE +NNSSPRVDPPLCQS+EGFPQHSSSHDAQLSKKGQQ+PTNCQVEFTFKD QT KVNYSDNLKG+EKENVT     
Subjt:  MEILNVLKNIVTAGDISQPTNLVESHNNSSPRVDPPLCQSEEGFPQHSSSHDAQLSKKGQQIPTNCQVEFTFKDGQTSKVNYSDNLKGKEKENVTNGNAE

Query:  GTAGKEYAQRWGEATEQLPMPLINKEPHPETNRSSIKRKNKVQVVISKRKGKYQQGFVAYSPSTAPINSLTLQNDPQTLLDNHSSRRQLKRESFHPIPIS
                QRWG+A EQLP+PLINKEPHP+ N+SSIKRKNKV  V+SKRK KYQQGFVAYSPST PINS+TLQ+DPQTL +NHSSRRQLKRESFH IP S
Subjt:  GTAGKEYAQRWGEATEQLPMPLINKEPHPETNRSSIKRKNKVQVVISKRKGKYQQGFVAYSPSTAPINSLTLQNDPQTLLDNHSSRRQLKRESFHPIPIS

Query:  YTELLSQLFQGNL
        YTELLSQLFQGNL
Subjt:  YTELLSQLFQGNL

A0A6J1DM29 LOW QUALITY PROTEIN: uncharacterized protein LOC1110222311.2e-2162.65Show/hide
Query:  DNHSSRRQLKRESFHPIPISYTELLSQLFQGNLLAPIPVEPLQQSYPKWYDPQVHYDYHAGAVGHSTENCTSLKHKVQVLIKA
        +N S+R+Q     F PIP++YTELL QLFQ N LAP+PV+P+Q  YP WYD     DYHAGA+GHSTENCT+LK++VQ LIKA
Subjt:  DNHSSRRQLKRESFHPIPISYTELLSQLFQGNLLAPIPVEPLQQSYPKWYDPQVHYDYHAGAVGHSTENCTSLKHKVQVLIKA

A0A6J1E2J7 Ribonuclease H4.3e-2260.24Show/hide
Query:  DNHSSRRQLKRESFHPIPISYTELLSQLFQGNLLAPIPVEPLQQSYPKWYDPQVHYDYHAGAVGHSTENCTSLKHKVQVLIKA
        +  ++R   K+  F PIP++YTELL QLFQ N LAP+PV+P+Q  YP+WYD     DYHAGA+GHSTENCT+LK++VQ LIKA
Subjt:  DNHSSRRQLKRESFHPIPISYTELLSQLFQGNLLAPIPVEPLQQSYPKWYDPQVHYDYHAGAVGHSTENCTSLKHKVQVLIKA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAATTTTAAATGTCTTAAAGAATATTGTTACAGCTGGGGACATTTCTCAACCTACCAATTTAGTTGAATCTCATAATAATTCATCACCTAGGGTGGACCCACCTCT
TTGTCAATCAGAAGAGGGCTTCCCTCAACACAGTTCGTCACATGATGCTCAGCTTTCCAAGAAAGGCCAACAAATTCCTACAAACTGCCAGGTTGAATTCACATTCAAAG
ATGGACAAACATCAAAGGTCAATTACTCAGATAATTTAAAAGGTAAAGAAAAAGAAAATGTTACCAATGGAAATGCTGAAGGAACTGCAGGGAAAGAATATGCTCAAAGA
TGGGGAGAAGCAACAGAACAGCTGCCGATGCCTTTAATTAATAAAGAGCCGCATCCTGAAACGAATAGAAGCTCTATTAAAAGGAAAAATAAAGTCCAGGTAGTAATTTC
GAAGCGCAAGGGGAAGTACCAACAAGGATTTGTGGCATATAGTCCTTCTACGGCACCCATAAACTCATTGACTCTGCAGAATGATCCACAAACATTACTCGATAATCATA
GTAGTCGGAGGCAACTAAAGCGAGAGAGCTTCCATCCGATCCCAATATCCTACACTGAGTTGTTATCCCAATTATTTCAAGGTAATCTATTAGCTCCCATACCCGTAGAG
CCATTGCAACAATCTTATCCAAAGTGGTACGACCCGCAAGTCCACTATGATTACCATGCAGGAGCTGTAGGTCATTCAACTGAGAACTGTACTTCACTAAAGCATAAAGT
GCAAGTTCTAATAAAGGCAGAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGAAATTTTAAATGTCTTAAAGAATATTGTTACAGCTGGGGACATTTCTCAACCTACCAATTTAGTTGAATCTCATAATAATTCATCACCTAGGGTGGACCCACCTCT
TTGTCAATCAGAAGAGGGCTTCCCTCAACACAGTTCGTCACATGATGCTCAGCTTTCCAAGAAAGGCCAACAAATTCCTACAAACTGCCAGGTTGAATTCACATTCAAAG
ATGGACAAACATCAAAGGTCAATTACTCAGATAATTTAAAAGGTAAAGAAAAAGAAAATGTTACCAATGGAAATGCTGAAGGAACTGCAGGGAAAGAATATGCTCAAAGA
TGGGGAGAAGCAACAGAACAGCTGCCGATGCCTTTAATTAATAAAGAGCCGCATCCTGAAACGAATAGAAGCTCTATTAAAAGGAAAAATAAAGTCCAGGTAGTAATTTC
GAAGCGCAAGGGGAAGTACCAACAAGGATTTGTGGCATATAGTCCTTCTACGGCACCCATAAACTCATTGACTCTGCAGAATGATCCACAAACATTACTCGATAATCATA
GTAGTCGGAGGCAACTAAAGCGAGAGAGCTTCCATCCGATCCCAATATCCTACACTGAGTTGTTATCCCAATTATTTCAAGGTAATCTATTAGCTCCCATACCCGTAGAG
CCATTGCAACAATCTTATCCAAAGTGGTACGACCCGCAAGTCCACTATGATTACCATGCAGGAGCTGTAGGTCATTCAACTGAGAACTGTACTTCACTAAAGCATAAAGT
GCAAGTTCTAATAAAGGCAGAATAG
Protein sequenceShow/hide protein sequence
MEILNVLKNIVTAGDISQPTNLVESHNNSSPRVDPPLCQSEEGFPQHSSSHDAQLSKKGQQIPTNCQVEFTFKDGQTSKVNYSDNLKGKEKENVTNGNAEGTAGKEYAQR
WGEATEQLPMPLINKEPHPETNRSSIKRKNKVQVVISKRKGKYQQGFVAYSPSTAPINSLTLQNDPQTLLDNHSSRRQLKRESFHPIPISYTELLSQLFQGNLLAPIPVE
PLQQSYPKWYDPQVHYDYHAGAVGHSTENCTSLKHKVQVLIKAE