; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc04g24650 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc04g24650
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionTransposon TX1 uncharacterized 149 kDa protein
Genome locationchr4:17823740..17829445
RNA-Seq ExpressionMoc04g24650
SyntenyMoc04g24650
Gene Ontology termsGO:0009987 - cellular process (biological process)
GO:0110165 - cellular anatomical structure (cellular component)
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN79629.1 hypothetical protein VITISV_002584 [Vitis vinifera]1.8e-1831.28Show/hide
Query:  LSLFQMPPVICKQIKKAMRDFFWEGNSKGPLKHLINWKITSMNIEDGGLGIGGL-------------------MRLC---------PFASADHGSTFINS
        LSLF +  ++  +I++  RDF W G  +G   HL+NW +       GGLG G +                     LC         P +S    S   + 
Subjt:  LSLFQMPPVICKQIKKAMRDFFWEGNSKGPLKHLINWKITSMNIEDGGLGIGGL-------------------MRLC---------PFASADHGSTFINS

Query:  GIGSRRSLKDVELVEYTNLLAILSMLSVS-AEANQRIWSLETSGLFSVSS----LSILQNVAPMHKDLFVALWKSKSPRKVNVFSWILLHGKLNTAEVIQ
            RR+L D E+ +   L+  L  L +S    ++R WSL   GLF+V S    LS      P+    FV  W S+ P KV  F W++ H K+NT +++Q
Subjt:  GIGSRRSLKDVELVEYTNLLAILSMLSVS-AEANQRIWSLETSGLFSVSS----LSILQNVAPMHKDLFVALWKSKSPRKVNVFSWILLHGKLNTAEVIQ

Query:  KKLSSSALLPSICVLCKENGEDLNHLF
         +    AL P IC LC ++ E ++HLF
Subjt:  KKLSSSALLPSICVLCKENGEDLNHLF

RVW41858.1 putative ribonuclease H protein [Vitis vinifera]9.5e-2029.89Show/hide
Query:  LSLFQMPPVICKQIKKAMRDFFWEGNSKGPLKHLINWKITSMNIEDGGLGIG----------------------GL------------------------
        LSLF++P  I  +I+K  RDF W G  +G   HLI W++ S   E GGLG G                      GL                        
Subjt:  LSLFQMPPVICKQIKKAMRDFFWEGNSKGPLKHLINWKITSMNIEDGGLGIG----------------------GL------------------------

Query:  MRLCPFASADHG--------------STFINSGIGSRRSLKDVELVEYTNLLAIL-SMLSVSAEANQRIWSLETSGLFSVSSL--SILQNVAPMHKDLFV
           CP+ +                  S  ++     RR+L D E+     L++ L S+L   + ++ R WSL +SG FSV S   ++ ++  P+      
Subjt:  MRLCPFASADHG--------------STFINSGIGSRRSLKDVELVEYTNLLAIL-SMLSVSAEANQRIWSLETSGLFSVSSL--SILQNVAPMHKDLFV

Query:  ALWKSKSPRKVNVFSWILLHGKLNTAEVIQKKLSSSALLPSICVLCKENGEDLNHLFSIAP
         LW SK P KV   +W++ HGK+NT + +Q +    AL P  C+LCK NGE ++H F I P
Subjt:  ALWKSKSPRKVNVFSWILLHGKLNTAEVIQKKLSSSALLPSICVLCKENGEDLNHLFSIAP

RVW47466.1 putative ribonuclease H protein [Vitis vinifera]1.7e-2133.5Show/hide
Query:  LSLFQMPPVICKQIKKAMRDFFWEGNSKGPLKHLINWKITSMNIEDGGLGIG-------GLMRLCPFASADHGSTFINSGIGSRRSLKDVELVEYTNLLA
        LSLF++P  +  ++++  R+F W G  +G   HLI+W +       GGLGIG        L+    +      +T  +     RR+L D E+ +   L+ 
Subjt:  LSLFQMPPVICKQIKKAMRDFFWEGNSKGPLKHLINWKITSMNIEDGGLGIG-------GLMRLCPFASADHGSTFINSGIGSRRSLKDVELVEYTNLLA

Query:  ILSMLSVSAEANQ-RIWSLETSGLFSVSS----LSILQNVAPMHKDLFVALWKSKSPRKVNVFSWILLHGKLNTAEVIQKKLSSSALLPSICVLCKENGE
         +  +++S  A+  R WSL +SGLF+V S    LS   + +P+    FV  WKS+ P KV  F W++ H K+NT +++Q +    AL   IC LC   GE
Subjt:  ILSMLSVSAEANQ-RIWSLETSGLFSVSS----LSILQNVAPMHKDLFVALWKSKSPRKVNVFSWILLHGKLNTAEVIQKKLSSSALLPSICVLCKENGE

Query:  DLNHLF
          +HLF
Subjt:  DLNHLF

RVW56165.1 Calcium-transporting ATPase 3, endoplasmic reticulum-type [Vitis vinifera]3.3e-2031.25Show/hide
Query:  LSLFQMPPVICKQIKKAMRDFFWEGNSKGPLKHLINWKITSMNIEDGGLGIG----------------------GLMRLCPFASADHGSTFINS------
        LSLF++P  I  +I+K  R+F W G  +G   HL+ W++ S   E GGLG G                      GL    PF S   G    NS      
Subjt:  LSLFQMPPVICKQIKKAMRDFFWEGNSKGPLKHLINWKITSMNIEDGGLGIG----------------------GLMRLCPFASADHGSTFINS------

Query:  ------------------------------------GIGSRRSLKDVELVEYTNLLAILSMLSVSAE-ANQRIWSLETSGLFSVSSLSI-LQNVAPMHKD
                                             +  RR+L D E+     L++ LS +  S   A+ R WSL +SGLF+V S  + L  V+  + +
Subjt:  ------------------------------------GIGSRRSLKDVELVEYTNLLAILSMLSVSAE-ANQRIWSLETSGLFSVSSLSI-LQNVAPMHKD

Query:  LFVA---LWKSKSPRKVNVFSWILLHGKLNTAEVIQKKLSSSALLPSICVLCKENGEDLNHLFSIAPLLLLGGFLNFLNFVLIGF-WI
        LF+    LW SK P KV   +WI+ HGK+NT + +Q +    +L P  C+LCK NGE ++HLF   P+ +  G  N L F L G  W+
Subjt:  LFVA---LWKSKSPRKVNVFSWILLHGKLNTAEVIQKKLSSSALLPSICVLCKENGEDLNHLFSIAPLLLLGGFLNFLNFVLIGF-WI

RVW56231.1 putative ribonuclease H protein [Vitis vinifera]1.8e-1829.14Show/hide
Query:  LSLFQMPPVICKQIKKAMRDFFWEGNSKGPLKHLINWKITSMNIEDGGLGIGGL----------------------------------------------
        LSLF++P  +  +I+K  R+F W G  +G   HL+ W++ S   E GGLG G +                                              
Subjt:  LSLFQMPPVICKQIKKAMRDFFWEGNSKGPLKHLINWKITSMNIEDGGLGIGGL----------------------------------------------

Query:  MRLCP--------------------FASADH----GSTFINSGI--GSRRSLKDVELVEYTNLLAILSMLSVSAE-ANQRIWSLETSGLFSVSSLSI-LQ
           CP                    F    H       F++ G+    RR+L D E+     L++ LS +  S   A+ R WSL +SGLF+V S  + L 
Subjt:  MRLCP--------------------FASADH----GSTFINSGI--GSRRSLKDVELVEYTNLLAILSMLSVSAE-ANQRIWSLETSGLFSVSSLSI-LQ

Query:  NVAPMHKDLFVA---LWKSKSPRKVNVFSWILLHGKLNTAEVIQKKLSSSALLPSICVLCKENGEDLNHLFSIAPLLL
         V+  +  LF+    LW SK P KV   +WI+ HGK+NT + +Q +    AL P  C+LCK NGE ++HLF   P+ +
Subjt:  NVAPMHKDLFVA---LWKSKSPRKVNVFSWILLHGKLNTAEVIQKKLSSSALLPSICVLCKENGEDLNHLFSIAPLLL

TrEMBL top hitse value%identityAlignment
A0A438E2D1 Putative ribonuclease H protein4.6e-2029.89Show/hide
Query:  LSLFQMPPVICKQIKKAMRDFFWEGNSKGPLKHLINWKITSMNIEDGGLGIG----------------------GL------------------------
        LSLF++P  I  +I+K  RDF W G  +G   HLI W++ S   E GGLG G                      GL                        
Subjt:  LSLFQMPPVICKQIKKAMRDFFWEGNSKGPLKHLINWKITSMNIEDGGLGIG----------------------GL------------------------

Query:  MRLCPFASADHG--------------STFINSGIGSRRSLKDVELVEYTNLLAIL-SMLSVSAEANQRIWSLETSGLFSVSSL--SILQNVAPMHKDLFV
           CP+ +                  S  ++     RR+L D E+     L++ L S+L   + ++ R WSL +SG FSV S   ++ ++  P+      
Subjt:  MRLCPFASADHG--------------STFINSGIGSRRSLKDVELVEYTNLLAIL-SMLSVSAEANQRIWSLETSGLFSVSSL--SILQNVAPMHKDLFV

Query:  ALWKSKSPRKVNVFSWILLHGKLNTAEVIQKKLSSSALLPSICVLCKENGEDLNHLFSIAP
         LW SK P KV   +W++ HGK+NT + +Q +    AL P  C+LCK NGE ++H F I P
Subjt:  ALWKSKSPRKVNVFSWILLHGKLNTAEVIQKKLSSSALLPSICVLCKENGEDLNHLFSIAP

A0A438EIB2 Putative ribonuclease H protein8.4e-2233.5Show/hide
Query:  LSLFQMPPVICKQIKKAMRDFFWEGNSKGPLKHLINWKITSMNIEDGGLGIG-------GLMRLCPFASADHGSTFINSGIGSRRSLKDVELVEYTNLLA
        LSLF++P  +  ++++  R+F W G  +G   HLI+W +       GGLGIG        L+    +      +T  +     RR+L D E+ +   L+ 
Subjt:  LSLFQMPPVICKQIKKAMRDFFWEGNSKGPLKHLINWKITSMNIEDGGLGIG-------GLMRLCPFASADHGSTFINSGIGSRRSLKDVELVEYTNLLA

Query:  ILSMLSVSAEANQ-RIWSLETSGLFSVSS----LSILQNVAPMHKDLFVALWKSKSPRKVNVFSWILLHGKLNTAEVIQKKLSSSALLPSICVLCKENGE
         +  +++S  A+  R WSL +SGLF+V S    LS   + +P+    FV  WKS+ P KV  F W++ H K+NT +++Q +    AL   IC LC   GE
Subjt:  ILSMLSVSAEANQ-RIWSLETSGLFSVSS----LSILQNVAPMHKDLFVALWKSKSPRKVNVFSWILLHGKLNTAEVIQKKLSSSALLPSICVLCKENGE

Query:  DLNHLF
          +HLF
Subjt:  DLNHLF

A0A438F829 Calcium-transporting ATPase 3, endoplasmic reticulum-type1.6e-2031.25Show/hide
Query:  LSLFQMPPVICKQIKKAMRDFFWEGNSKGPLKHLINWKITSMNIEDGGLGIG----------------------GLMRLCPFASADHGSTFINS------
        LSLF++P  I  +I+K  R+F W G  +G   HL+ W++ S   E GGLG G                      GL    PF S   G    NS      
Subjt:  LSLFQMPPVICKQIKKAMRDFFWEGNSKGPLKHLINWKITSMNIEDGGLGIG----------------------GLMRLCPFASADHGSTFINS------

Query:  ------------------------------------GIGSRRSLKDVELVEYTNLLAILSMLSVSAE-ANQRIWSLETSGLFSVSSLSI-LQNVAPMHKD
                                             +  RR+L D E+     L++ LS +  S   A+ R WSL +SGLF+V S  + L  V+  + +
Subjt:  ------------------------------------GIGSRRSLKDVELVEYTNLLAILSMLSVSAE-ANQRIWSLETSGLFSVSSLSI-LQNVAPMHKD

Query:  LFVA---LWKSKSPRKVNVFSWILLHGKLNTAEVIQKKLSSSALLPSICVLCKENGEDLNHLFSIAPLLLLGGFLNFLNFVLIGF-WI
        LF+    LW SK P KV   +WI+ HGK+NT + +Q +    +L P  C+LCK NGE ++HLF   P+ +  G  N L F L G  W+
Subjt:  LFVA---LWKSKSPRKVNVFSWILLHGKLNTAEVIQKKLSSSALLPSICVLCKENGEDLNHLFSIAPLLLLGGFLNFLNFVLIGF-WI

A5C3A7 Uncharacterized protein8.7e-1931.28Show/hide
Query:  LSLFQMPPVICKQIKKAMRDFFWEGNSKGPLKHLINWKITSMNIEDGGLGIGGL-------------------MRLC---------PFASADHGSTFINS
        LSLF +  ++  +I++  RDF W G  +G   HL+NW +       GGLG G +                     LC         P +S    S   + 
Subjt:  LSLFQMPPVICKQIKKAMRDFFWEGNSKGPLKHLINWKITSMNIEDGGLGIGGL-------------------MRLC---------PFASADHGSTFINS

Query:  GIGSRRSLKDVELVEYTNLLAILSMLSVS-AEANQRIWSLETSGLFSVSS----LSILQNVAPMHKDLFVALWKSKSPRKVNVFSWILLHGKLNTAEVIQ
            RR+L D E+ +   L+  L  L +S    ++R WSL   GLF+V S    LS      P+    FV  W S+ P KV  F W++ H K+NT +++Q
Subjt:  GIGSRRSLKDVELVEYTNLLAILSMLSVS-AEANQRIWSLETSGLFSVSS----LSILQNVAPMHKDLFVALWKSKSPRKVNVFSWILLHGKLNTAEVIQ

Query:  KKLSSSALLPSICVLCKENGEDLNHLF
         +    AL P IC LC ++ E ++HLF
Subjt:  KKLSSSALLPSICVLCKENGEDLNHLF

M5W794 Reverse transcriptase domain-containing protein (Fragment)1.2e-2029.25Show/hide
Query:  LSLFQMPPVICKQIKKAMRDFFWEGNSKGPLKHLINWKITSMNIEDGGLGIGGL-----------MRLCPFASADHGSTFINSGIG--------------
        +SLF+ P  +  ++++ MR+F WEG   G   HL+ W+  + + E+GGLGIG L           +   P  S       I S  G              
Subjt:  LSLFQMPPVICKQIKKAMRDFFWEGNSKGPLKHLINWKITSMNIEDGGLGIGGL-----------MRLCPFASADHGSTFINSGIG--------------

Query:  ----------------------------SRRSLKDVELVEYTNLLAILSMLSV-SAEANQRIWSLETSGLFSVSS-----LSILQNVAPMHKDLFVALWK
                                    S+R+L + E+ E   LL IL  + +  + +++R W +E  G FS  S     LS  ++V P     F+++WK
Subjt:  ----------------------------SRRSLKDVELVEYTNLLAILSMLSV-SAEANQRIWSLETSGLFSVSS-----LSILQNVAPMHKDLFVALWK

Query:  SKSPRKVNVFSWILLHGKLNTAEVIQKKLSSSALLPSICVLCKENGEDLNHLF
        +K+P K+  F W+ ++G++NT + IQ++     L PS CVLCKEN E+++HLF
Subjt:  SKSPRKVNVFSWILLHGKLNTAEVIQKKLSSSALLPSICVLCKENGEDLNHLF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAATTCGCCCCAACTCATCTCGCTCCCAACGGGTGCGCTGCTCTGCTTTTTGTGTGGTACACTTGTTGGGGTTTCAGTGCCGGAGATGATGAGCTTCTTTTAGACCT
CTCCCAAGGCCAGCTCCCCGACAGCGAATACTCGTGGGGGGTGCACGACCTAGTGATAGACCTCGACAAGATTTGGTTCGAAGGGGTGCTTGACGATGTGAACCTCCATC
AATGTAGTCTAAAATTGTTTTCCTCGCTCAACAAGAAATGCCATGCTGAGGTGCCCACTCTTGGTGAGGCAACTTCAAAGCATGGAAAATCCGGGAAGAGGTCGGATGAG
GCGTCATCTCGATCTCTCCTCGAGCCCATCAATATTTCGTCAGAGGATGGGATACGACCAACTATCATTCCCAAGATGGACTTCAGTTACTCATTCAAGCTCAACTTCAT
GGAGGAATCAATACGTGATGCAGCTCTCAAGGCTTACAAGAATAGCTCGGAATGGGTGCTGAGTTTGAACGAAGGGGCCTTCCTGGAAAAACTTGGTGACTATGAGCTAA
AGGCTGAGCTGGAGAAGGTTCACGCCGAGAATGATGAACTCCATAAATCAACTTCTTCACTCGAGAACCTCTTAAACCAGGCTCGGCTTGACGTCTTCCCGTTCCTTCAT
CTAGCTTATGTTCTTCATGTAGCATTCAGACCGAATGACTCTATGAAATTACGTCGATACTTCCACATATTACGGGATGACGATGTTATGCTTCTCAACTTGATAAGAAC
CATTAAAGAATTTGAATGGCTATCGGGCTTAGCAGTAAATTGGGACGAATCAACATTGTGCGGTGTGAATATTCCAGCTTCTCGCCCTCCACCAGGTAGCGTCTTCCTTA
AATTGTCATTATTTCAAATGCCTCCAGTAATTTGCAAGCAAATCAAGAAAGCCATGAGGGATTTCTTTTGGGAAGGCAATTCCAAAGGACCGTTGAAGCATTTAATTAAT
TGGAAGATTACTTCCATGAACATTGAAGATGGCGGGTTGGGTATTGGTGGTCTTATGAGACTTTGCCCATTTGCAAGCGCTGACCATGGATCAACATTTATAAACAGTGG
CATTGGGTCAAGAAGATCCTTGAAAGATGTTGAGTTAGTGGAATATACTAATCTACTTGCTATATTAAGCATGCTTTCGGTTAGTGCTGAGGCTAACCAAAGAATTTGGT
CCCTGGAAACTTCTGGTCTGTTCTCTGTTTCATCCTTAAGCATATTGCAAAATGTTGCTCCAATGCATAAAGATCTGTTTGTTGCTTTATGGAAATCAAAGAGTCCAAGA
AAGGTGAATGTGTTTTCTTGGATTCTTCTTCATGGGAAGCTTAATACTGCAGAAGTTATTCAGAAAAAGCTCTCTTCTTCTGCTTTACTACCGTCTATTTGTGTCCTTTG
TAAAGAAAATGGGGAAGATTTGAATCATCTTTTTTCCATTGCTCCTTTGCTGTTGCTGGGTGGTTTTCTTAATTTTCTCAATTTTGTGTTGATTGGGTTTTGGATTACAA
GGCAGAAGCCAATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAATTCGCCCCAACTCATCTCGCTCCCAACGGGTGCGCTGCTCTGCTTTTTGTGTGGTACACTTGTTGGGGTTTCAGTGCCGGAGATGATGAGCTTCTTTTAGACCT
CTCCCAAGGCCAGCTCCCCGACAGCGAATACTCGTGGGGGGTGCACGACCTAGTGATAGACCTCGACAAGATTTGGTTCGAAGGGGTGCTTGACGATGTGAACCTCCATC
AATGTAGTCTAAAATTGTTTTCCTCGCTCAACAAGAAATGCCATGCTGAGGTGCCCACTCTTGGTGAGGCAACTTCAAAGCATGGAAAATCCGGGAAGAGGTCGGATGAG
GCGTCATCTCGATCTCTCCTCGAGCCCATCAATATTTCGTCAGAGGATGGGATACGACCAACTATCATTCCCAAGATGGACTTCAGTTACTCATTCAAGCTCAACTTCAT
GGAGGAATCAATACGTGATGCAGCTCTCAAGGCTTACAAGAATAGCTCGGAATGGGTGCTGAGTTTGAACGAAGGGGCCTTCCTGGAAAAACTTGGTGACTATGAGCTAA
AGGCTGAGCTGGAGAAGGTTCACGCCGAGAATGATGAACTCCATAAATCAACTTCTTCACTCGAGAACCTCTTAAACCAGGCTCGGCTTGACGTCTTCCCGTTCCTTCAT
CTAGCTTATGTTCTTCATGTAGCATTCAGACCGAATGACTCTATGAAATTACGTCGATACTTCCACATATTACGGGATGACGATGTTATGCTTCTCAACTTGATAAGAAC
CATTAAAGAATTTGAATGGCTATCGGGCTTAGCAGTAAATTGGGACGAATCAACATTGTGCGGTGTGAATATTCCAGCTTCTCGCCCTCCACCAGGTAGCGTCTTCCTTA
AATTGTCATTATTTCAAATGCCTCCAGTAATTTGCAAGCAAATCAAGAAAGCCATGAGGGATTTCTTTTGGGAAGGCAATTCCAAAGGACCGTTGAAGCATTTAATTAAT
TGGAAGATTACTTCCATGAACATTGAAGATGGCGGGTTGGGTATTGGTGGTCTTATGAGACTTTGCCCATTTGCAAGCGCTGACCATGGATCAACATTTATAAACAGTGG
CATTGGGTCAAGAAGATCCTTGAAAGATGTTGAGTTAGTGGAATATACTAATCTACTTGCTATATTAAGCATGCTTTCGGTTAGTGCTGAGGCTAACCAAAGAATTTGGT
CCCTGGAAACTTCTGGTCTGTTCTCTGTTTCATCCTTAAGCATATTGCAAAATGTTGCTCCAATGCATAAAGATCTGTTTGTTGCTTTATGGAAATCAAAGAGTCCAAGA
AAGGTGAATGTGTTTTCTTGGATTCTTCTTCATGGGAAGCTTAATACTGCAGAAGTTATTCAGAAAAAGCTCTCTTCTTCTGCTTTACTACCGTCTATTTGTGTCCTTTG
TAAAGAAAATGGGGAAGATTTGAATCATCTTTTTTCCATTGCTCCTTTGCTGTTGCTGGGTGGTTTTCTTAATTTTCTCAATTTTGTGTTGATTGGGTTTTGGATTACAA
GGCAGAAGCCAATTTGA
Protein sequenceShow/hide protein sequence
MKFAPTHLAPNGCAALLFVWYTCWGFSAGDDELLLDLSQGQLPDSEYSWGVHDLVIDLDKIWFEGVLDDVNLHQCSLKLFSSLNKKCHAEVPTLGEATSKHGKSGKRSDE
ASSRSLLEPINISSEDGIRPTIIPKMDFSYSFKLNFMEESIRDAALKAYKNSSEWVLSLNEGAFLEKLGDYELKAELEKVHAENDELHKSTSSLENLLNQARLDVFPFLH
LAYVLHVAFRPNDSMKLRRYFHILRDDDVMLLNLIRTIKEFEWLSGLAVNWDESTLCGVNIPASRPPPGSVFLKLSLFQMPPVICKQIKKAMRDFFWEGNSKGPLKHLIN
WKITSMNIEDGGLGIGGLMRLCPFASADHGSTFINSGIGSRRSLKDVELVEYTNLLAILSMLSVSAEANQRIWSLETSGLFSVSSLSILQNVAPMHKDLFVALWKSKSPR
KVNVFSWILLHGKLNTAEVIQKKLSSSALLPSICVLCKENGEDLNHLFSIAPLLLLGGFLNFLNFVLIGFWITRQKPI